Protein–RNA interactions for Protein: Q8C6S9

Cfap54, Cilia- and flagella-associated protein 54, mousemouse

Predictions only

Length 3,106 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cfap54Q8C6S9 Gm25239-201ENSMUST00000174915 86 ntBASIC38.93■■■■□ 3.82
Cfap54Q8C6S9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC36.23■■■■□ 3.39
Cfap54Q8C6S9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
Cfap54Q8C6S9 Gm24109-201ENSMUST00000175489 103 ntBASIC34.19■■■■□ 3.06
Cfap54Q8C6S9 Gm15042-201ENSMUST00000120212 883 ntBASIC33.34■■■□□ 2.93
Cfap54Q8C6S9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
Cfap54Q8C6S9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Cfap54Q8C6S9 Gm15045-201ENSMUST00000117359 883 ntBASIC32.83■■■□□ 2.85
Cfap54Q8C6S9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
Cfap54Q8C6S9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Cfap54Q8C6S9 Gm23366-201ENSMUST00000175022 89 ntBASIC32.29■■■□□ 2.76
Cfap54Q8C6S9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC31.96■■■□□ 2.71
Cfap54Q8C6S9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC31.83■■■□□ 2.69
Cfap54Q8C6S9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Cfap54Q8C6S9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Cfap54Q8C6S9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
Cfap54Q8C6S9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Cfap54Q8C6S9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cfap54Q8C6S9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC31.09■■■□□ 2.57
Cfap54Q8C6S9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
Cfap54Q8C6S9 Gm25238-201ENSMUST00000174914 89 ntBASIC31.07■■■□□ 2.56
Cfap54Q8C6S9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
Cfap54Q8C6S9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Cfap54Q8C6S9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Cfap54Q8C6S9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC30.33■■■□□ 2.45
Cfap54Q8C6S9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
Cfap54Q8C6S9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
Cfap54Q8C6S9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
Cfap54Q8C6S9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC30.17■■■□□ 2.42
Cfap54Q8C6S9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Cfap54Q8C6S9 Gm25262-201ENSMUST00000174934 133 ntBASIC30.06■■■□□ 2.4
Cfap54Q8C6S9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.94■■■□□ 2.38
Cfap54Q8C6S9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
Cfap54Q8C6S9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.37
Cfap54Q8C6S9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC29.87■■■□□ 2.37
Cfap54Q8C6S9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
Cfap54Q8C6S9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
Cfap54Q8C6S9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC29.69■■■□□ 2.34
Cfap54Q8C6S9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
Cfap54Q8C6S9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC29.58■■■□□ 2.33
Cfap54Q8C6S9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Cfap54Q8C6S9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC29.55■■■□□ 2.32
Cfap54Q8C6S9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC29.44■■■□□ 2.3
Cfap54Q8C6S9 Gm26115-201ENSMUST00000175605 87 ntBASIC29.4■■■□□ 2.3
Cfap54Q8C6S9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC29.36■■■□□ 2.29
Cfap54Q8C6S9 Gm27325-201ENSMUST00000175467 74 ntBASIC29.34■■■□□ 2.29
Cfap54Q8C6S9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC29.33■■■□□ 2.29
Cfap54Q8C6S9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Cfap54Q8C6S9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
Cfap54Q8C6S9 Gm8109-201ENSMUST00000194076 746 ntBASIC29.2■■■□□ 2.26
Cfap54Q8C6S9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC29.14■■■□□ 2.25
Cfap54Q8C6S9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
Cfap54Q8C6S9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Cfap54Q8C6S9 Rab21-202ENSMUST00000218831 843 ntBASIC29.07■■■□□ 2.24
Cfap54Q8C6S9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Cfap54Q8C6S9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Cfap54Q8C6S9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
Cfap54Q8C6S9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Cfap54Q8C6S9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC28.85■■■□□ 2.21
Cfap54Q8C6S9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Cfap54Q8C6S9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
Cfap54Q8C6S9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC28.76■■■□□ 2.2
Cfap54Q8C6S9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC28.7■■■□□ 2.19
Cfap54Q8C6S9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.68■■■□□ 2.18
Cfap54Q8C6S9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Cfap54Q8C6S9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.56■■■□□ 2.16
Cfap54Q8C6S9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Cfap54Q8C6S9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC28.53■■■□□ 2.16
Cfap54Q8C6S9 Psd-208ENSMUST00000224556 2034 ntBASIC28.51■■■□□ 2.15
Cfap54Q8C6S9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Cfap54Q8C6S9 Gm24804-201ENSMUST00000174982 85 ntBASIC28.37■■■□□ 2.13
Cfap54Q8C6S9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Cfap54Q8C6S9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Cfap54Q8C6S9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
Cfap54Q8C6S9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Cfap54Q8C6S9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Cfap54Q8C6S9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.25■■■□□ 2.11
Cfap54Q8C6S9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Cfap54Q8C6S9 Gm17082-201ENSMUST00000166043 1091 ntBASIC28.16■■■□□ 2.1
Cfap54Q8C6S9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Cfap54Q8C6S9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Cfap54Q8C6S9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC28.06■■■□□ 2.08
Cfap54Q8C6S9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC28.05■■■□□ 2.08
Cfap54Q8C6S9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Cfap54Q8C6S9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC27.94■■■□□ 2.06
Cfap54Q8C6S9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC27.94■■■□□ 2.06
Cfap54Q8C6S9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.93■■■□□ 2.06
Cfap54Q8C6S9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC27.92■■■□□ 2.06
Cfap54Q8C6S9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
Cfap54Q8C6S9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Cfap54Q8C6S9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
Cfap54Q8C6S9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Cfap54Q8C6S9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Cfap54Q8C6S9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Cfap54Q8C6S9 Zfp131-205ENSMUST00000223812 663 ntBASIC27.75■■■□□ 2.03
Cfap54Q8C6S9 Gm27322-201ENSMUST00000184007 104 ntBASIC27.73■■■□□ 2.03
Cfap54Q8C6S9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC27.72■■■□□ 2.03
Cfap54Q8C6S9 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC27.72■■■□□ 2.03
Cfap54Q8C6S9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Cfap54Q8C6S9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC27.72■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms