Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Gm25239-201ENSMUST00000174915 86 ntBASIC41.06■■■■■ 4.16
Col12a1Q60847 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.29■■■■□ 3.72
Col12a1Q60847 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.64■■■■□ 3.62
Col12a1Q60847 Gm24109-201ENSMUST00000175489 103 ntBASIC36.1■■■■□ 3.37
Col12a1Q60847 Gm15042-201ENSMUST00000120212 883 ntBASIC34.95■■■■□ 3.19
Col12a1Q60847 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.81■■■■□ 3.16
Col12a1Q60847 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.8■■■■□ 3.16
Col12a1Q60847 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
Col12a1Q60847 Gm15045-201ENSMUST00000117359 883 ntBASIC34.33■■■■□ 3.09
Col12a1Q60847 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Col12a1Q60847 Gm23366-201ENSMUST00000175022 89 ntBASIC33.99■■■■□ 3.03
Col12a1Q60847 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.89■■■■□ 3.02
Col12a1Q60847 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.64■■■□□ 2.98
Col12a1Q60847 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
Col12a1Q60847 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Col12a1Q60847 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.41■■■□□ 2.94
Col12a1Q60847 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
Col12a1Q60847 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
Col12a1Q60847 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.82■■■□□ 2.84
Col12a1Q60847 Gm25238-201ENSMUST00000174914 89 ntBASIC32.81■■■□□ 2.84
Col12a1Q60847 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Col12a1Q60847 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC32.52■■■□□ 2.8
Col12a1Q60847 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.95■■■□□ 2.7
Col12a1Q60847 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Col12a1Q60847 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.89■■■□□ 2.7
Col12a1Q60847 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Col12a1Q60847 Gm25262-201ENSMUST00000174934 133 ntBASIC31.8■■■□□ 2.68
Col12a1Q60847 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col12a1Q60847 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.48■■■□□ 2.63
Col12a1Q60847 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col12a1Q60847 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
Col12a1Q60847 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.34■■■□□ 2.61
Col12a1Q60847 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.29■■■□□ 2.6
Col12a1Q60847 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Col12a1Q60847 Gm26115-201ENSMUST00000175605 87 ntBASIC31.22■■■□□ 2.59
Col12a1Q60847 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.21■■■□□ 2.59
Col12a1Q60847 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.19■■■□□ 2.58
Col12a1Q60847 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.12■■■□□ 2.57
Col12a1Q60847 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Col12a1Q60847 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Col12a1Q60847 Gm8109-201ENSMUST00000194076 746 ntBASIC31■■■□□ 2.55
Col12a1Q60847 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC30.93■■■□□ 2.54
Col12a1Q60847 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
Col12a1Q60847 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Col12a1Q60847 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col12a1Q60847 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Col12a1Q60847 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Col12a1Q60847 Gm27325-201ENSMUST00000175467 74 ntBASIC30.71■■■□□ 2.51
Col12a1Q60847 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.67■■■□□ 2.5
Col12a1Q60847 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col12a1Q60847 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.62■■■□□ 2.49
Col12a1Q60847 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.57■■■□□ 2.48
Col12a1Q60847 Rab21-202ENSMUST00000218831 843 ntBASIC30.55■■■□□ 2.48
Col12a1Q60847 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
Col12a1Q60847 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.54■■■□□ 2.48
Col12a1Q60847 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Col12a1Q60847 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Col12a1Q60847 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.27■■■□□ 2.44
Col12a1Q60847 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.26■■■□□ 2.43
Col12a1Q60847 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Col12a1Q60847 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Col12a1Q60847 Gm24804-201ENSMUST00000174982 85 ntBASIC30.02■■■□□ 2.4
Col12a1Q60847 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Col12a1Q60847 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
Col12a1Q60847 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
Col12a1Q60847 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
Col12a1Q60847 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col12a1Q60847 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Col12a1Q60847 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC29.75■■■□□ 2.35
Col12a1Q60847 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
Col12a1Q60847 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC29.73■■■□□ 2.35
Col12a1Q60847 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
Col12a1Q60847 Gm17082-201ENSMUST00000166043 1091 ntBASIC29.67■■■□□ 2.34
Col12a1Q60847 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC29.66■■■□□ 2.34
Col12a1Q60847 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
Col12a1Q60847 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29.62■■■□□ 2.33
Col12a1Q60847 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC29.6■■■□□ 2.33
Col12a1Q60847 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC29.51■■■□□ 2.31
Col12a1Q60847 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.31
Col12a1Q60847 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC29.49■■■□□ 2.31
Col12a1Q60847 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC29.45■■■□□ 2.3
Col12a1Q60847 Zfp131-205ENSMUST00000223812 663 ntBASIC29.43■■■□□ 2.3
Col12a1Q60847 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
Col12a1Q60847 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.39■■■□□ 2.29
Col12a1Q60847 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
Col12a1Q60847 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Col12a1Q60847 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Col12a1Q60847 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
Col12a1Q60847 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Col12a1Q60847 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Col12a1Q60847 Gm27322-201ENSMUST00000184007 104 ntBASIC29.23■■■□□ 2.27
Col12a1Q60847 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Col12a1Q60847 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Col12a1Q60847 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
Col12a1Q60847 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC29.18■■■□□ 2.26
Col12a1Q60847 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.18■■■□□ 2.26
Col12a1Q60847 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC29.16■■■□□ 2.26
Col12a1Q60847 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
Col12a1Q60847 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC29.11■■■□□ 2.25
Col12a1Q60847 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms