RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 Ube2uB1AUC4 352 aa16.91■□□□□ 0.3
Clcn3-202ENSMUST00000056508 Ehmt2Q9Z148 1263 aaKnown RBP16.55■□□□□ 0.24
Clcn3-202ENSMUST00000056508 Ttbk1Q6PCN3 1308 aa16.18■□□□□ 0.18
Clcn3-202ENSMUST00000056508 DiexfQ8BTT6 772 aaKnown RBP15.71■□□□□ 0.1
Clcn3-202ENSMUST00000056508 Amer1Q7TS75 1132 aa15.65■□□□□ 0.1
Clcn3-202ENSMUST00000056508 Rhox8Q6VSS7 320 aa15.57■□□□□ 0.08
Clcn3-202ENSMUST00000056508 Ppargc1bQ8VHJ7 1014 aa14.93□□□□□ -0.02
Clcn3-202ENSMUST00000056508 Plppr3Q7TPB0 716 aa14.91□□□□□ -0.02
Clcn3-202ENSMUST00000056508 CatipB9EKE5 520 aa14.78□□□□□ -0.04
Clcn3-202ENSMUST00000056508 Q8BT18 775 aa14.77□□□□□ -0.05
Clcn3-202ENSMUST00000056508 Arid3aQ62431 601 aa14.77□□□□□ -0.05
Clcn3-202ENSMUST00000056508 ArxO35085 564 aa14.74□□□□□ -0.05
Clcn3-202ENSMUST00000056508 Chic1Q8CBW7 227 aa14.55□□□□□ -0.08
Clcn3-202ENSMUST00000056508 Myt1Q8CFC2 1127 aa14.52□□□□□ -0.08
Clcn3-202ENSMUST00000056508 Pelp1Q9DBD5 1123 aaKnown RBP14.45□□□□□ -0.1
Clcn3-202ENSMUST00000056508 Kcna4Q61423 654 aa14.39□□□□□ -0.11
Clcn3-202ENSMUST00000056508 Ripply1Q2WG77 201 aa14.36□□□□□ -0.11
Clcn3-202ENSMUST00000056508 Prdm10Q3UTQ7 1184 aa14.35□□□□□ -0.11
Clcn3-202ENSMUST00000056508 Zeb1Q64318 1117 aa14.3□□□□□ -0.12
Clcn3-202ENSMUST00000056508 Zbtb7cQ8VCZ7 619 aa14.21□□□□□ -0.13
Clcn3-202ENSMUST00000056508 4930567H17RikQ3V0K5 233 aa14.17□□□□□ -0.14
Clcn3-202ENSMUST00000056508 Esf1Q3V1V3 845 aaKnown RBP14.17□□□□□ -0.14
Clcn3-202ENSMUST00000056508 Las1lA2BE28 776 aaKnown RBP14.15□□□□□ -0.14
Clcn3-202ENSMUST00000056508 Slc4a1apE9PX68 744 aa14.13□□□□□ -0.15
Clcn3-202ENSMUST00000056508 Bcl11aQ9QYE3 773 aa14.1□□□□□ -0.15
Clcn3-202ENSMUST00000056508 Taok2Q6ZQ29 1240 aa14.06□□□□□ -0.16
Clcn3-202ENSMUST00000056508 Rangap1P46061 589 aaKnown RBP14□□□□□ -0.17
Clcn3-202ENSMUST00000056508 Vsig10D3YX43 558 aa14□□□□□ -0.17
Clcn3-202ENSMUST00000056508 Cngb1E1AZ71 1325 aa13.94□□□□□ -0.18
Clcn3-202ENSMUST00000056508 Prm3Q62100 101 aa13.93□□□□□ -0.18
Clcn3-202ENSMUST00000056508 Gab3Q8BSM5 595 aa13.87□□□□□ -0.19
Clcn3-202ENSMUST00000056508 Npm2Q80W85 207 aa13.87□□□□□ -0.19
Clcn3-202ENSMUST00000056508 Os9Q8K2C7 672 aa13.81□□□□□ -0.2
Clcn3-202ENSMUST00000056508 Znf326O88291 580 aa13.81□□□□□ -0.2
Clcn3-202ENSMUST00000056508 AcrbpQ3V140 540 aa13.81□□□□□ -0.2
Clcn3-202ENSMUST00000056508 CenpbP27790 599 aa13.76□□□□□ -0.21
Clcn3-202ENSMUST00000056508 Ythdc1E9Q5K9 736 aaKnown RBP13.75□□□□□ -0.21
Clcn3-202ENSMUST00000056508 Cdk11bP24788 784 aaKnown RBP13.74□□□□□ -0.21
Clcn3-202ENSMUST00000056508 DaxxO35613 739 aa13.71□□□□□ -0.22
Clcn3-202ENSMUST00000056508 Ecm2Q5FW85 670 aa13.68□□□□□ -0.22
Clcn3-202ENSMUST00000056508 NclP09405 707 aaKnown RBP13.67□□□□□ -0.22
Clcn3-202ENSMUST00000056508 Eif5bQ05D44 1216 aaKnown RBP13.64□□□□□ -0.23
Clcn3-202ENSMUST00000056508 4933416C03RikQ3V063 378 aa13.61□□□□□ -0.23
Clcn3-202ENSMUST00000056508 Wdr66E9Q743 1299 aa13.6□□□□□ -0.23
Clcn3-202ENSMUST00000056508 UbtfP25976 765 aaKnown RBP13.59□□□□□ -0.23
Clcn3-202ENSMUST00000056508 Fam71e1A1L3C1 212 aa13.59□□□□□ -0.23
Clcn3-202ENSMUST00000056508 BccipQ9CWI3 316 aa13.52□□□□□ -0.25
Clcn3-202ENSMUST00000056508 Hmgb1P63158 215 aaKnown RBP13.5□□□□□ -0.25
Clcn3-202ENSMUST00000056508 Podxl2Q8CAE9 603 aa13.49□□□□□ -0.25
Clcn3-202ENSMUST00000056508 Rpgrip1Q9EPQ2 1331 aa13.48□□□□□ -0.25
Clcn3-202ENSMUST00000056508 PrkcshO08795 521 aa13.43□□□□□ -0.26
Clcn3-202ENSMUST00000056508 Anp32bQ9EST5 272 aaKnown RBP13.42□□□□□ -0.26
Clcn3-202ENSMUST00000056508 Rtn4Q99P72 1162 aaKnown RBP13.41□□□□□ -0.26
Clcn3-202ENSMUST00000056508 Skap1Q3UUV5 355 aa13.38□□□□□ -0.27
Clcn3-202ENSMUST00000056508 Rtl5Q5DTT4 599 aa13.37□□□□□ -0.27
Clcn3-202ENSMUST00000056508 Arid4bA2CG63 1314 aaKnown RBP13.27□□□□□ -0.28
Clcn3-202ENSMUST00000056508 Polr3glQ8R0C0 218 aa13.27□□□□□ -0.28
Clcn3-202ENSMUST00000056508 1700123L14RikQ3V2K7 440 aa13.26□□□□□ -0.29
Clcn3-202ENSMUST00000056508 Rad21Q61550 635 aaKnown RBP13.25□□□□□ -0.29
Clcn3-202ENSMUST00000056508 Gtf3c5Q8R2T8 520 aa13.22□□□□□ -0.29
Clcn3-202ENSMUST00000056508 Slc24a1Q91WD8 1130 aa13.2□□□□□ -0.3
Clcn3-202ENSMUST00000056508 Lmod3E9QA62 571 aa13.17□□□□□ -0.3
Clcn3-202ENSMUST00000056508 Znf316Q6PGE4 1016 aa13.13□□□□□ -0.31
Clcn3-202ENSMUST00000056508 Gm13697A2AK42 830 aa13.12□□□□□ -0.31
Clcn3-202ENSMUST00000056508 Kiaa1211Q5PR69 1207 aa13.08□□□□□ -0.32
Clcn3-202ENSMUST00000056508 Mapk8ip2Q9ERE9 830 aa13.08□□□□□ -0.32
Clcn3-202ENSMUST00000056508 Ubap1lG3UW59 384 aa13.07□□□□□ -0.32
Clcn3-202ENSMUST00000056508 Trap1aP19473 224 aa13.05□□□□□ -0.32
Clcn3-202ENSMUST00000056508 Tshz2Q68FE9 1030 aa13.04□□□□□ -0.32
Clcn3-202ENSMUST00000056508 Ncbp3Q8BZR9 615 aaKnown RBP13.02□□□□□ -0.32
Clcn3-202ENSMUST00000056508 HrcG5E8J6 738 aa12.98□□□□□ -0.33
Clcn3-202ENSMUST00000056508 Ccdc96Q9CR92 584 aa12.98□□□□□ -0.33
Clcn3-202ENSMUST00000056508 Aplp2Q06335 707 aa12.97□□□□□ -0.33
Clcn3-202ENSMUST00000056508 Nlrp6Q91WS2 869 aa12.96□□□□□ -0.33
Clcn3-202ENSMUST00000056508 HomezQ80W88 542 aa12.95□□□□□ -0.34
Clcn3-202ENSMUST00000056508 Fbxo3Q9DC63 480 aa12.93□□□□□ -0.34
Clcn3-202ENSMUST00000056508 TimelessQ9R1X4 1197 aa12.91□□□□□ -0.34
Clcn3-202ENSMUST00000056508 NefmP08553 848 aa12.88□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Plcd4Q8K3R3 807 aa12.88□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Irx3P81067 507 aa12.88□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Hsp90b1P08113 802 aaKnown RBP12.86□□□□□ -0.35
Clcn3-202ENSMUST00000056508 1700019A02RikA0A087WPV9 146 aa12.86□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Gtf3c3Q3TMP1 882 aa12.85□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Spryd3E9Q9B3 442 aa12.84□□□□□ -0.35
Clcn3-202ENSMUST00000056508 Gm13695A2AK44 830 aa12.8□□□□□ -0.36
Clcn3-202ENSMUST00000056508 Myt1lP97500 1187 aa12.78□□□□□ -0.36
Clcn3-202ENSMUST00000056508 PtmaP26350 111 aa12.77□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Ppp4r2Q0VGB7 417 aa12.77□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Supt5hO55201 1082 aaKnown RBP12.76□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Prdm16A2A935 1275 aa12.75□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Rbm25B2RY56 838 aaKnown RBP12.75□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Phf23Q8BSN5 401 aa12.74□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Pknox2Q8BG99 474 aa12.72□□□□□ -0.37
Clcn3-202ENSMUST00000056508 Scaf1Q5U4C3 1256 aaKnown RBP12.69□□□□□ -0.38
Clcn3-202ENSMUST00000056508 Senp3Q9EP97 568 aaKnown RBP12.65□□□□□ -0.38
Clcn3-202ENSMUST00000056508 Psmd1Q3TXS7 953 aa12.65□□□□□ -0.38
Clcn3-202ENSMUST00000056508 TprnA2AI08 749 aaKnown RBP12.64□□□□□ -0.39
Clcn3-202ENSMUST00000056508 Plcd3Q8K2J0 785 aa12.64□□□□□ -0.39
Clcn3-202ENSMUST00000056508 Clstn1Q9EPL2 979 aa12.61□□□□□ -0.39
Clcn3-202ENSMUST00000056508 Neurod2Q62414 383 aa12.61□□□□□ -0.39
Retrieved 100 of 22,080 RNA–protein pairs in 51.6 ms