Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Gm25239-201ENSMUST00000174915 86 ntBASIC41.96■■■■■ 4.31
Col4a4Q9QZR9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC39.24■■■■□ 3.87
Col4a4Q9QZR9 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.27■■■■□ 3.72
Col4a4Q9QZR9 Gm24109-201ENSMUST00000175489 103 ntBASIC36.77■■■■□ 3.48
Col4a4Q9QZR9 Gm15042-201ENSMUST00000120212 883 ntBASIC36.19■■■■□ 3.38
Col4a4Q9QZR9 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.5■■■■□ 3.27
Col4a4Q9QZR9 Gm15045-201ENSMUST00000117359 883 ntBASIC35.46■■■■□ 3.27
Col4a4Q9QZR9 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.35■■■■□ 3.25
Col4a4Q9QZR9 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.31■■■■□ 3.24
Col4a4Q9QZR9 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
Col4a4Q9QZR9 Gm23366-201ENSMUST00000175022 89 ntBASIC34.92■■■■□ 3.18
Col4a4Q9QZR9 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.43■■■■□ 3.1
Col4a4Q9QZR9 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.05■■■■□ 3.04
Col4a4Q9QZR9 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.04■■■■□ 3.04
Col4a4Q9QZR9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
Col4a4Q9QZR9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
Col4a4Q9QZR9 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Col4a4Q9QZR9 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Col4a4Q9QZR9 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.31■■■□□ 2.92
Col4a4Q9QZR9 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Col4a4Q9QZR9 Gm25238-201ENSMUST00000174914 89 ntBASIC33.27■■■□□ 2.92
Col4a4Q9QZR9 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.22■■■□□ 2.91
Col4a4Q9QZR9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
Col4a4Q9QZR9 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
Col4a4Q9QZR9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Col4a4Q9QZR9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
Col4a4Q9QZR9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Col4a4Q9QZR9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.31■■■□□ 2.76
Col4a4Q9QZR9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Col4a4Q9QZR9 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.1■■■□□ 2.73
Col4a4Q9QZR9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.08■■■□□ 2.73
Col4a4Q9QZR9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC32.04■■■□□ 2.72
Col4a4Q9QZR9 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Col4a4Q9QZR9 Gm25262-201ENSMUST00000174934 133 ntBASIC32.03■■■□□ 2.72
Col4a4Q9QZR9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC31.98■■■□□ 2.71
Col4a4Q9QZR9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Col4a4Q9QZR9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC31.74■■■□□ 2.67
Col4a4Q9QZR9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Col4a4Q9QZR9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC31.7■■■□□ 2.67
Col4a4Q9QZR9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
Col4a4Q9QZR9 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.67■■■□□ 2.66
Col4a4Q9QZR9 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
Col4a4Q9QZR9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC31.64■■■□□ 2.65
Col4a4Q9QZR9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Col4a4Q9QZR9 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC31.6■■■□□ 2.65
Col4a4Q9QZR9 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
Col4a4Q9QZR9 Gm27325-201ENSMUST00000175467 74 ntBASIC31.53■■■□□ 2.64
Col4a4Q9QZR9 Gm26115-201ENSMUST00000175605 87 ntBASIC31.51■■■□□ 2.64
Col4a4Q9QZR9 Gm8109-201ENSMUST00000194076 746 ntBASIC31.44■■■□□ 2.62
Col4a4Q9QZR9 Rab21-202ENSMUST00000218831 843 ntBASIC31.33■■■□□ 2.61
Col4a4Q9QZR9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.25■■■□□ 2.59
Col4a4Q9QZR9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Col4a4Q9QZR9 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Col4a4Q9QZR9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
Col4a4Q9QZR9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Col4a4Q9QZR9 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Col4a4Q9QZR9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.06■■■□□ 2.56
Col4a4Q9QZR9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Col4a4Q9QZR9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Col4a4Q9QZR9 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.82■■■□□ 2.52
Col4a4Q9QZR9 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Col4a4Q9QZR9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Col4a4Q9QZR9 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC30.73■■■□□ 2.51
Col4a4Q9QZR9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.73■■■□□ 2.51
Col4a4Q9QZR9 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC30.68■■■□□ 2.5
Col4a4Q9QZR9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
Col4a4Q9QZR9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
Col4a4Q9QZR9 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
Col4a4Q9QZR9 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Col4a4Q9QZR9 Gm17082-201ENSMUST00000166043 1091 ntBASIC30.48■■■□□ 2.47
Col4a4Q9QZR9 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.47■■■□□ 2.47
Col4a4Q9QZR9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col4a4Q9QZR9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Col4a4Q9QZR9 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Col4a4Q9QZR9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
Col4a4Q9QZR9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Col4a4Q9QZR9 Gm24804-201ENSMUST00000174982 85 ntBASIC30.25■■■□□ 2.43
Col4a4Q9QZR9 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Col4a4Q9QZR9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC30.18■■■□□ 2.42
Col4a4Q9QZR9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
Col4a4Q9QZR9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.1■■■□□ 2.41
Col4a4Q9QZR9 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.05■■■□□ 2.4
Col4a4Q9QZR9 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.04■■■□□ 2.4
Col4a4Q9QZR9 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC29.98■■■□□ 2.39
Col4a4Q9QZR9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.98■■■□□ 2.39
Col4a4Q9QZR9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC29.98■■■□□ 2.39
Col4a4Q9QZR9 Psd-208ENSMUST00000224556 2034 ntBASIC29.97■■■□□ 2.39
Col4a4Q9QZR9 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC29.97■■■□□ 2.39
Col4a4Q9QZR9 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC29.96■■■□□ 2.39
Col4a4Q9QZR9 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC29.93■■■□□ 2.38
Col4a4Q9QZR9 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col4a4Q9QZR9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Col4a4Q9QZR9 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC29.88■■■□□ 2.37
Col4a4Q9QZR9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC29.87■■■□□ 2.37
Col4a4Q9QZR9 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
Col4a4Q9QZR9 Zfp131-205ENSMUST00000223812 663 ntBASIC29.86■■■□□ 2.37
Col4a4Q9QZR9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
Col4a4Q9QZR9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC29.82■■■□□ 2.36
Col4a4Q9QZR9 Gm27322-201ENSMUST00000184007 104 ntBASIC29.81■■■□□ 2.36
Col4a4Q9QZR9 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Retrieved 100 of 76,532 protein–RNA pairs in 9.1 ms