RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS38	YLR360W	CHO2	P05374	869 aa	Known RBP	4.04	□□□□□ -1.76
VPS38	YLR360W	LTP1	P40347	161 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	HIS6	P40545	261 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	TEP1	P53916	434 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	HRD3	Q05787	833 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	BSP1	Q06604	576 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	HIM1	Q06674	414 aa		4.04	□□□□□ -1.76
VPS38	YLR360W	GAL1	P04385	528 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	RRP43	P25359	394 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS38	YLR360W	SAP1	P39955	897 aa	Known RBP	4.03	□□□□□ -1.76
VPS38	YLR360W	ULP2	P40537	1034 aa	Predicted RBP	4.03	□□□□□ -1.76
VPS38	YLR360W	BST1	P43571	1029 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	NMD5	P46970	1048 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	PLM2	Q04383	521 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	TPO3	Q06451	622 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	MLC2	Q06580	163 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	YDL242W	Q07746	117 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	YOR389W	Q08912	624 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	ICL2	Q12031	575 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	NYV1	Q12255	253 aa		4.03	□□□□□ -1.76
VPS38	YLR360W	PRS5	Q12265	496 aa	Known RBP	4.03	□□□□□ -1.76
VPS38	YLR360W	SIP1	P32578	815 aa		4.02	□□□□□ -1.77
VPS38	YLR360W	STT3	P39007	718 aa	Known RBP	4.02	□□□□□ -1.77
VPS38	YLR360W	VPS8	P39702	1274 aa		4.02	□□□□□ -1.77
VPS38	YLR360W	BPL1	P48445	690 aa	Predicted RBP	4.02	□□□□□ -1.77
VPS38	YLR360W	ESF2	P53743	316 aa	Known RBP	4.02	□□□□□ -1.77
VPS38	YLR360W	AIM6	Q07716	390 aa		4.02	□□□□□ -1.77
VPS38	YLR360W	PNO1	Q99216	274 aa	Known RBP	4.02	□□□□□ -1.77
VPS38	YLR360W	RTC1	Q08281	1341 aa		4.02	□□□□□ -1.77
VPS38	YLR360W	POL3	P15436	1097 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	YEF3	P16521	1044 aa	Known RBP	4.01	□□□□□ -1.77
VPS38	YLR360W	PTP2	P29461	750 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	APM3	P38153	483 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	CAB2	P40506	365 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	PSA1	P41940	361 aa	Known RBP	4.01	□□□□□ -1.77
VPS38	YLR360W	CIR1	P42940	261 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	QRI7	P43122	407 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	SNO3	P43544	222 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	GLO1	P50107	326 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	YNL058C	P53947	316 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	MOT3	P54785	490 aa	Known RBP	4.01	□□□□□ -1.77
VPS38	YLR360W	ERG13	P54839	491 aa	Known RBP	4.01	□□□□□ -1.77
VPS38	YLR360W	SPN1	Q06505	410 aa	Predicted RBP	4.01	□□□□□ -1.77
VPS38	YLR360W	LCB4	Q12246	624 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	YLR111W	Q12528	110 aa		4.01	□□□□□ -1.77
VPS38	YLR360W	MSH1	P25846	959 aa		4	□□□□□ -1.77
VPS38	YLR360W	STP1	Q00947	519 aa		4	□□□□□ -1.77
VPS38	YLR360W	RSC9	Q03124	581 aa		4	□□□□□ -1.77
VPS38	YLR360W	SIR1	P21691	654 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	SWC3	P31376	625 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	RPF2	P36160	344 aa	Known RBP	3.99	□□□□□ -1.77
VPS38	YLR360W	VPS27	P40343	622 aa	Known RBP	3.99	□□□□□ -1.77
VPS38	YLR360W	RAD26	P40352	1085 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	SNM1	P40993	198 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	IRC7	P43623	340 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	IDP3	P53982	420 aa	Known RBP	3.99	□□□□□ -1.77
VPS38	YLR360W	YPL108W	Q02872	168 aa	Predicted RBP	3.99	□□□□□ -1.77
VPS38	YLR360W	ATG21	Q02887	496 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	SNU56	Q03782	492 aa	Known RBP	3.99	□□□□□ -1.77
VPS38	YLR360W	ARA2	Q04212	335 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	Q0010	Q9ZZX9	128 aa		3.99	□□□□□ -1.77
VPS38	YLR360W	ATP4	P05626	244 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	KGD2	P19262	463 aa	Predicted RBP	3.98	□□□□□ -1.77
VPS38	YLR360W	PDE1	P22434	369 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	RIT1	P23796	513 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	FTH1	P38310	465 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	IMD2	P38697	523 aa	Known RBP	3.98	□□□□□ -1.77
VPS38	YLR360W	GAT1	P43574	510 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	IMD3	P50095	523 aa	Known RBP	3.98	□□□□□ -1.77
VPS38	YLR360W	YAP7	Q08182	245 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	YOL057W	Q08225	711 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	ICT1	Q12385	394 aa		3.98	□□□□□ -1.77
VPS38	YLR360W	ADE3	P07245	946 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	PIF1	P07271	859 aa		3.97	□□□□□ -1.77
VPS38	YLR360W	ILV2	P07342	687 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	MSS18	P08593	268 aa		3.97	□□□□□ -1.77
VPS38	YLR360W	YMR085W	P0CF18	432 aa		3.97	□□□□□ -1.77
VPS38	YLR360W	SEC18	P18759	758 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	MCM3	P24279	971 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	SWI4	P25302	1093 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	FRD1	P32614	470 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	KES1	P35844	434 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	VBA2	P38358	474 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	SEC5	P89102	971 aa		3.97	□□□□□ -1.77
VPS38	YLR360W	BRE1	Q07457	700 aa	Known RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	IWR1	Q07532	353 aa	Predicted RBP	3.97	□□□□□ -1.77
VPS38	YLR360W	SES1	P07284	462 aa	Known RBP	3.96	□□□□□ -1.77
VPS38	YLR360W	MIS1	P09440	975 aa	Known RBP	3.96	□□□□□ -1.77
VPS38	YLR360W	YAT1	P80235	687 aa		3.96	□□□□□ -1.77
VPS38	YLR360W	YBR255C-A	Q3E776	120 aa		3.96	□□□□□ -1.77
VPS38	YLR360W	CET1	O13297	549 aa	Predicted RBP	3.95	□□□□□ -1.78
VPS38	YLR360W	ILS1	P09436	1072 aa	Known RBP	3.95	□□□□□ -1.78
VPS38	YLR360W	YAP1	P19880	650 aa	Known RBP	3.95	□□□□□ -1.78
VPS38	YLR360W	MAK32	P23060	363 aa		3.95	□□□□□ -1.78
VPS38	YLR360W	TMT1	P32643	299 aa		3.95	□□□□□ -1.78
VPS38	YLR360W	YHL041W	P38730	149 aa		3.95	□□□□□ -1.78
VPS38	YLR360W	ERC1	P38767	581 aa		3.95	□□□□□ -1.78
VPS38	YLR360W	FUN12	P39730	1002 aa	Known RBP	3.95	□□□□□ -1.78
VPS38	YLR360W	CIN1	P40987	1014 aa		3.95	□□□□□ -1.78
VPS38	YLR360W	SKP2	P42843	763 aa		3.95	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms