RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C YDL073WQ07454 984 aa4.55□□□□□ -1.68
CDC9YDL164C ZRT2Q12436 422 aa4.55□□□□□ -1.68
CDC9YDL164C SKM1Q12469 655 aa4.55□□□□□ -1.68
CDC9YDL164C YOR111WQ99210 232 aa4.55□□□□□ -1.68
CDC9YDL164C SEC53P07283 254 aaKnown RBP4.54□□□□□ -1.68
CDC9YDL164C CDC24P11433 854 aaPredicted RBP4.54□□□□□ -1.68
CDC9YDL164C SUI2P20459 304 aaKnown RBP4.54□□□□□ -1.68
CDC9YDL164C RSC6P25632 483 aa4.54□□□□□ -1.68
CDC9YDL164C MIC60P36112 540 aa4.54□□□□□ -1.68
CDC9YDL164C UTP9P38882 575 aaKnown RBP4.54□□□□□ -1.68
CDC9YDL164C UME6P39001 836 aa4.54□□□□□ -1.68
CDC9YDL164C BUD27P43573 796 aaKnown RBP RIP-Chip data4.54□□□□□ -1.68not detected
CDC9YDL164C ROK1P45818 564 aaPredicted RBP4.54□□□□□ -1.68
CDC9YDL164C SDH1Q00711 640 aa4.54□□□□□ -1.68
CDC9YDL164C UFO1Q04511 668 aa4.54□□□□□ -1.68
CDC9YDL164C VPS36Q06696 566 aa4.54□□□□□ -1.68
CDC9YDL164C AIM6Q07716 390 aa4.54□□□□□ -1.68
CDC9YDL164C HRK1Q08732 759 aaKnown RBP4.54□□□□□ -1.68
CDC9YDL164C HNM1P19807 563 aa4.53□□□□□ -1.68
CDC9YDL164C CST26P38226 397 aa4.53□□□□□ -1.68
CDC9YDL164C CTM1P38818 585 aa4.53□□□□□ -1.68
CDC9YDL164C MPT5P39016 859 aaKnown RBP RIP-Chip data4.53□□□□□ -1.68not detected
CDC9YDL164C SHE10P53075 577 aa4.53□□□□□ -1.68
CDC9YDL164C DUS1P53759 423 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C DBP9Q06218 594 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C NOP6Q07623 225 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C SPA2P23201 1466 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C ATG19P35193 415 aa4.53□□□□□ -1.68
CDC9YDL164C STB5P38699 743 aa4.53□□□□□ -1.68
CDC9YDL164C FSH1P38777 243 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C JHD1P40034 492 aa4.53□□□□□ -1.68
CDC9YDL164C GIP2P40036 548 aa4.53□□□□□ -1.68
CDC9YDL164C YIR007WP40566 764 aa4.53□□□□□ -1.68
CDC9YDL164C CUL3P53202 744 aa4.53□□□□□ -1.68
CDC9YDL164C MUB1Q03162 620 aa4.53□□□□□ -1.68
CDC9YDL164C YMR210WQ03649 449 aa4.53□□□□□ -1.68
CDC9YDL164C RCO1Q04779 684 aa4.53□□□□□ -1.68
CDC9YDL164C RBS1Q05672 457 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C SMD2Q06217 110 aaKnown RBP4.53□□□□□ -1.68
CDC9YDL164C YPR196WQ06595 470 aa4.53□□□□□ -1.68
CDC9YDL164C CRD1Q07560 283 aa4.53□□□□□ -1.68
CDC9YDL164C RPL1AP0CX43 217 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C RPL1BP0CX44 217 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C SAM35P14693 329 aa4.52□□□□□ -1.69
CDC9YDL164C OCA4P25366 362 aa4.52□□□□□ -1.69
CDC9YDL164C SPC110P32380 944 aa4.52□□□□□ -1.69
CDC9YDL164C RPN2P32565 945 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C SRP101P32916 621 aa4.52□□□□□ -1.69
CDC9YDL164C NIP100P33420 868 aa4.52□□□□□ -1.69
CDC9YDL164C GPT2P36148 743 aa4.52□□□□□ -1.69
CDC9YDL164C CRG1P38892 291 aaRIP-Chip data4.52□□□□□ -1.69not detected
CDC9YDL164C TIF4631P39935 952 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C TED1P40533 473 aa4.52□□□□□ -1.69
CDC9YDL164C VBA4Q04602 768 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C SOV1Q04748 898 aa4.52□□□□□ -1.69
CDC9YDL164C MRD1Q06106 887 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C YLR456WQ06199 204 aa4.52□□□□□ -1.69
CDC9YDL164C PCK1P10963 549 aa4.52□□□□□ -1.69
CDC9YDL164C PRP4P20053 465 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C NAR1P23503 491 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C YCR051WP25631 222 aa4.52□□□□□ -1.69
CDC9YDL164C PRP45P28004 379 aaPredicted RBP4.52□□□□□ -1.69
CDC9YDL164C CRM1P30822 1084 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C YEL043WP32618 956 aa4.52□□□□□ -1.69
CDC9YDL164C TYE7P33122 291 aaPredicted RBP4.52□□□□□ -1.69
CDC9YDL164C ALY1P36117 915 aa4.52□□□□□ -1.69
CDC9YDL164C SAP190P36123 1033 aa4.52□□□□□ -1.69
CDC9YDL164C POL12P38121 705 aaPredicted RBP4.52□□□□□ -1.69
CDC9YDL164C POA1P38218 177 aa4.52□□□□□ -1.69
CDC9YDL164C EHT1P38295 451 aa4.52□□□□□ -1.69
CDC9YDL164C AAD10P47182 288 aa4.52□□□□□ -1.69
CDC9YDL164C GLO1P50107 326 aa4.52□□□□□ -1.69
CDC9YDL164C ALT2P52892 507 aa4.52□□□□□ -1.69
CDC9YDL164C HMO1Q03973 246 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C RRT8Q08219 342 aa4.52□□□□□ -1.69
CDC9YDL164C HUA2Q12134 243 aa4.52□□□□□ -1.69
CDC9YDL164C LEU9Q12166 604 aaKnown RBP4.52□□□□□ -1.69
CDC9YDL164C MDY2Q12285 212 aa4.52□□□□□ -1.69
CDC9YDL164C YRF1-4O13559 1382 aa4.52□□□□□ -1.69
CDC9YDL164C MDH1P17505 334 aaKnown RBP RIP-Chip data4.51□□□□□ -1.69not detected
CDC9YDL164C RFA1P22336 621 aaKnown RBP4.51□□□□□ -1.69
CDC9YDL164C CPR2P23285 205 aa4.51□□□□□ -1.69
CDC9YDL164C PRP28P23394 588 aa4.51□□□□□ -1.69
CDC9YDL164C SPB1P25582 841 aaPredicted RBP4.51□□□□□ -1.69
CDC9YDL164C PET127P32606 800 aa4.51□□□□□ -1.69
CDC9YDL164C VPS17P32913 551 aa4.51□□□□□ -1.69
CDC9YDL164C CCT7P42943 550 aaKnown RBP4.51□□□□□ -1.69
CDC9YDL164C TAF4P50105 388 aa4.51□□□□□ -1.69
CDC9YDL164C PDR16P53860 351 aaKnown RBP4.51□□□□□ -1.69
CDC9YDL164C TMA16Q08687 178 aa4.51□□□□□ -1.69
CDC9YDL164C UAF30Q08747 228 aa4.51□□□□□ -1.69
CDC9YDL164C ELG1Q12050 791 aa4.51□□□□□ -1.69
CDC9YDL164C VPS33P20795 691 aa4.51□□□□□ -1.69
CDC9YDL164C PRE2P30656 287 aaKnown RBP4.51□□□□□ -1.69
CDC9YDL164C TAF5P38129 798 aa4.51□□□□□ -1.69
CDC9YDL164C ATG14P38270 344 aa4.51□□□□□ -1.69
CDC9YDL164C YHR033WP38690 423 aa4.51□□□□□ -1.69
CDC9YDL164C LEM3P42838 414 aa4.51□□□□□ -1.69
CDC9YDL164C ENP2P48234 707 aaKnown RBP4.51□□□□□ -1.69
CDC9YDL164C YGL036WP53185 909 aaPredicted RBP4.51□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms