RNA–Protein interactions for RNA: YLR397C

AFG2, Transcript of ATPase of the CDC48/PAS1/SEC18 (AAA) family, forms a hexameric complex, yeastyeast

Gene AFG2, Length 2,343 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
AFG2YLR397C VPS4P52917 437 aa8.93□□□□□ -0.98
AFG2YLR397C SRB8P25648 1427 aa8.93□□□□□ -0.98
AFG2YLR397C MMS1Q06211 1407 aa8.92□□□□□ -0.98
AFG2YLR397C RIX1P38883 763 aaPredicted RBP8.91□□□□□ -0.98
AFG2YLR397C SMC3P47037 1230 aa8.9□□□□□ -0.98
AFG2YLR397C BMS1Q08965 1183 aaKnown RBP8.9□□□□□ -0.98
AFG2YLR397C DSN1P40568 576 aa8.89□□□□□ -0.99
AFG2YLR397C RPN1P38764 993 aaKnown RBP8.89□□□□□ -0.99
AFG2YLR397C PAP2P53632 584 aaKnown RBP8.89□□□□□ -0.99
AFG2YLR397C HSP82P02829 709 aaKnown RBP8.88□□□□□ -0.99
AFG2YLR397C PIL1P53252 339 aaKnown RBP8.88□□□□□ -0.99
AFG2YLR397C TIF4632P39936 914 aaKnown RBP8.87□□□□□ -0.99
AFG2YLR397C KNS1P32350 737 aaPredicted RBP8.87□□□□□ -0.99
AFG2YLR397C MSH4P40965 878 aaPredicted RBP8.87□□□□□ -0.99
AFG2YLR397C NNF2P53253 936 aa8.87□□□□□ -0.99
AFG2YLR397C PEP1P32319 1579 aa8.87□□□□□ -0.99
AFG2YLR397C PRP3Q03338 469 aaPredicted RBP8.86□□□□□ -0.99
AFG2YLR397C MED8P38304 223 aa8.85□□□□□ -0.99
AFG2YLR397C RPN7Q06103 429 aaKnown RBP8.85□□□□□ -0.99
AFG2YLR397C ECM1P39715 212 aa8.83□□□□□ -1
AFG2YLR397C KIP3P53086 805 aaKnown RBP8.82□□□□□ -1
AFG2YLR397C PCT1P13259 424 aa8.82□□□□□ -1
AFG2YLR397C RIM101P33400 625 aa8.82□□□□□ -1
AFG2YLR397C YLR419WQ06698 1435 aaKnown RBP8.81□□□□□ -1
AFG2YLR397C PLP2Q12017 286 aa8.81□□□□□ -1
AFG2YLR397C SPB4P25808 606 aaPredicted RBP8.8□□□□□ -1
AFG2YLR397C MYO4P32492 1471 aa8.79□□□□□ -1
AFG2YLR397C NOT3P06102 836 aaKnown RBP8.79□□□□□ -1
AFG2YLR397C ORC1P54784 914 aaPredicted RBP8.79□□□□□ -1
AFG2YLR397C LTV1P34078 463 aa8.78□□□□□ -1
AFG2YLR397C MYO2P19524 1574 aaKnown RBP8.78□□□□□ -1
AFG2YLR397C RSC1P53236 928 aa8.77□□□□□ -1
AFG2YLR397C MDG1P53885 366 aa8.77□□□□□ -1.01
AFG2YLR397C RAD2P07276 1031 aa8.76□□□□□ -1.01
AFG2YLR397C MSP1P28737 362 aa8.76□□□□□ -1.01
AFG2YLR397C RRP14P36080 434 aaKnown RBP8.76□□□□□ -1.01
AFG2YLR397C BYE1P36106 594 aa8.76□□□□□ -1.01
AFG2YLR397C SAP190P36123 1033 aa8.76□□□□□ -1.01
AFG2YLR397C ARL1P38116 183 aaKnown RBP8.76□□□□□ -1.01
AFG2YLR397C DSF2P38213 736 aa8.76□□□□□ -1.01
AFG2YLR397C TY1B-AO13527 1196 aaKnown RBP8.75□□□□□ -1.01
AFG2YLR397C YIR014WP40570 242 aa8.75□□□□□ -1.01
AFG2YLR397C SNU71P53207 620 aaKnown RBP8.74□□□□□ -1.01
AFG2YLR397C YSH1Q06224 779 aaPredicted RBP8.74□□□□□ -1.01
AFG2YLR397C CLB1P24868 471 aa8.74□□□□□ -1.01
AFG2YLR397C SUP35P05453 685 aaKnown RBP8.73□□□□□ -1.01
AFG2YLR397C UTP13Q05946 817 aaKnown RBP8.72□□□□□ -1.01
AFG2YLR397C SSA1P10591 642 aaKnown RBP8.72□□□□□ -1.01
AFG2YLR397C SSA2P10592 639 aaKnown RBP8.72□□□□□ -1.01
AFG2YLR397C NST1P53935 1240 aa8.72□□□□□ -1.01
AFG2YLR397C NOP8Q08287 484 aaPredicted RBP8.72□□□□□ -1.01
AFG2YLR397C MCM1P11746 286 aa8.71□□□□□ -1.02
AFG2YLR397C YPK9Q12697 1472 aa8.71□□□□□ -1.02
AFG2YLR397C TAF2P23255 1407 aa8.7□□□□□ -1.02
AFG2YLR397C RSC8P43609 557 aaKnown RBP8.7□□□□□ -1.02
AFG2YLR397C EDE1P34216 1381 aa8.7□□□□□ -1.02
AFG2YLR397C DEP1P31385 405 aa8.7□□□□□ -1.02
AFG2YLR397C BDP1P46678 594 aa8.7□□□□□ -1.02
AFG2YLR397C THO2P53552 1597 aaKnown RBP8.69□□□□□ -1.02
AFG2YLR397C PSE1P32337 1089 aaKnown RBP8.69□□□□□ -1.02
AFG2YLR397C TPM2P40414 161 aa8.69□□□□□ -1.02
AFG2YLR397C PUP2P32379 260 aa8.68□□□□□ -1.02
AFG2YLR397C RAD51P25454 400 aa8.68□□□□□ -1.02
AFG2YLR397C NOP14Q99207 810 aaKnown RBP8.67□□□□□ -1.02
AFG2YLR397C VPS24P36095 224 aaKnown RBP8.66□□□□□ -1.02
AFG2YLR397C MGA2P40578 1113 aa8.66□□□□□ -1.02
AFG2YLR397C TAN1P53072 289 aaPredicted RBP8.66□□□□□ -1.02
AFG2YLR397C UBP10P53874 792 aaPredicted RBP8.66□□□□□ -1.02
AFG2YLR397C COG8Q04632 607 aa8.66□□□□□ -1.02
AFG2YLR397C ABP1P15891 592 aaKnown RBP8.65□□□□□ -1.02
AFG2YLR397C TLG1Q03322 224 aa8.65□□□□□ -1.02
AFG2YLR397C NHA1Q99271 985 aa8.65□□□□□ -1.03
AFG2YLR397C CBF5P33322 483 aaKnown RBP RIP-Chip data8.64□□□□□ -1.03not detected
AFG2YLR397C LEM3P42838 414 aa8.64□□□□□ -1.03
AFG2YLR397C RVB2Q12464 471 aaKnown RBP8.64□□□□□ -1.03
AFG2YLR397C TY1B-DR4Q07793 1604 aa8.64□□□□□ -1.03
AFG2YLR397C RPS0AP32905 252 aaKnown RBP8.64□□□□□ -1.03
AFG2YLR397C APL6P46682 809 aa8.64□□□□□ -1.03
AFG2YLR397C TEA1P47988 759 aa8.64□□□□□ -1.03
AFG2YLR397C SMC4Q12267 1418 aa8.64□□□□□ -1.03
AFG2YLR397C SCC2Q04002 1493 aa8.63□□□□□ -1.03
AFG2YLR397C SEC9P40357 651 aa8.63□□□□□ -1.03
AFG2YLR397C ITC1P53125 1264 aa8.63□□□□□ -1.03
AFG2YLR397C MCM2P29469 868 aa8.63□□□□□ -1.03
AFG2YLR397C CIN4P39110 191 aa8.63□□□□□ -1.03
AFG2YLR397C YGL140CP53120 1219 aa8.62□□□□□ -1.03
AFG2YLR397C YMR102CQ03177 834 aa8.62□□□□□ -1.03
AFG2YLR397C VPS60Q03390 229 aa8.62□□□□□ -1.03
AFG2YLR397C SLP1Q12232 587 aa8.62□□□□□ -1.03
AFG2YLR397C REV3P14284 1504 aa8.61□□□□□ -1.03
AFG2YLR397C BPT1P14772 1559 aa8.61□□□□□ -1.03
AFG2YLR397C SIN3P22579 1536 aa8.61□□□□□ -1.03
AFG2YLR397C TOP1P04786 769 aa8.61□□□□□ -1.03
AFG2YLR397C SPT5P27692 1063 aaKnown RBP8.61□□□□□ -1.03
AFG2YLR397C GDT1P38301 280 aaPredicted RBP8.61□□□□□ -1.03
AFG2YLR397C NUP170P38181 1502 aa8.61□□□□□ -1.03
AFG2YLR397C MLP2P40457 1679 aa8.6□□□□□ -1.03
AFG2YLR397C SRP54P20424 541 aaKnown RBP8.6□□□□□ -1.03
AFG2YLR397C SWH1P35845 1188 aa8.6□□□□□ -1.03
AFG2YLR397C HIF1Q12373 385 aa8.59□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 7.8 ms