RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C KIN1P13185 1064 aa6.49□□□□□ -1.37
CDC48YDL126C POL1P13382 1468 aa6.48□□□□□ -1.37
CDC48YDL126C COQ8P27697 501 aa6.47□□□□□ -1.37
CDC48YDL126C EDS1P38073 919 aa6.47□□□□□ -1.37
CDC48YDL126C SCC2Q04002 1493 aa6.46□□□□□ -1.37
CDC48YDL126C DIT2P21595 489 aa6.46□□□□□ -1.37
CDC48YDL126C AIM7Q12156 149 aa6.46□□□□□ -1.37
CDC48YDL126C NOP53Q12080 455 aaKnown RBP6.45□□□□□ -1.38
CDC48YDL126C STS1P38637 319 aa6.44□□□□□ -1.38
CDC48YDL126C RKR1Q04781 1562 aa6.43□□□□□ -1.38
CDC48YDL126C STU1P38198 1513 aa6.43□□□□□ -1.38
CDC48YDL126C GUA1P38625 525 aaKnown RBP6.43□□□□□ -1.38
CDC48YDL126C RPO31P04051 1460 aa6.43□□□□□ -1.38
CDC48YDL126C GLC3P32775 704 aa6.42□□□□□ -1.38
CDC48YDL126C CHD1P32657 1468 aa6.41□□□□□ -1.38
CDC48YDL126C UFD4P33202 1483 aa6.39□□□□□ -1.39
CDC48YDL126C YOR1P53049 1477 aa6.39□□□□□ -1.39
CDC48YDL126C YCF1P39109 1515 aaKnown RBP6.38□□□□□ -1.39
CDC48YDL126C IES2P40154 320 aa6.38□□□□□ -1.39
CDC48YDL126C SCY1P53009 804 aa6.38□□□□□ -1.39
CDC48YDL126C YDR090CQ03193 310 aa6.38□□□□□ -1.39
CDC48YDL126C MMS22Q06164 1454 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-LR1P0C2J3 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-FP0CX63 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-GR2P0CX64 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-CP25384 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-DR2Q03494 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY1B-DR1Q03855 1755 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-DR3Q07791 1770 aaKnown RBP6.38□□□□□ -1.39
CDC48YDL126C TY2B-OR1Q12113 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-DR1Q12472 1770 aa6.38□□□□□ -1.39
CDC48YDL126C TY2B-OR2Q12501 1770 aa6.38□□□□□ -1.39
CDC48YDL126C MAM3Q12296 706 aa6.37□□□□□ -1.39
CDC48YDL126C TOP2P06786 1428 aaKnown RBP6.37□□□□□ -1.39
CDC48YDL126C COX6P00427 148 aa6.37□□□□□ -1.39
CDC48YDL126C REF2P42073 533 aaPredicted RBP6.37□□□□□ -1.39
CDC48YDL126C BPT1P14772 1559 aa6.36□□□□□ -1.39
CDC48YDL126C YTA7P40340 1379 aa6.36□□□□□ -1.39
CDC48YDL126C MAP2P38174 421 aaKnown RBP6.35□□□□□ -1.39
CDC48YDL126C SMC4Q12267 1418 aa6.35□□□□□ -1.39
CDC48YDL126C TY1B-DR3Q99231 1755 aa6.34□□□□□ -1.39
CDC48YDL126C MYO4P32492 1471 aa6.34□□□□□ -1.39
CDC48YDL126C YMR1P47147 688 aaKnown RBP RIP-Chip data6.33□□□□□ -1.4not detected
CDC48YDL126C TY2B-BQ12491 1770 aa6.32□□□□□ -1.4
CDC48YDL126C UBP14P38237 781 aaKnown RBP6.32□□□□□ -1.4
CDC48YDL126C HPC2Q01448 625 aa6.32□□□□□ -1.4
CDC48YDL126C UBP10P53874 792 aaPredicted RBP6.32□□□□□ -1.4
CDC48YDL126C NOP8Q08287 484 aaPredicted RBP6.31□□□□□ -1.4
CDC48YDL126C PTC3P34221 468 aaKnown RBP6.3□□□□□ -1.4
CDC48YDL126C MAK21Q12176 1025 aaKnown RBP6.29□□□□□ -1.4
CDC48YDL126C TY1B-BRQ12193 1756 aa6.29□□□□□ -1.4
CDC48YDL126C TY1B-GR3Q12316 1755 aa6.29□□□□□ -1.4
CDC48YDL126C TY1B-ORQ92393 1755 aa6.29□□□□□ -1.4
CDC48YDL126C TY1B-HO13535 1793 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-DR5P0C2I2 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-DR6P0C2I3 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-LR2P0C2I5 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-LR3P0C2I6 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C TY1B-PR1P0C2I9 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C TY1B-PR2P0C2J0 1756 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-PR3P0C2J1 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C TY1B-JR1P47098 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-ML2Q03434 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C TY1B-ER1Q03612 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-ML1Q04711 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C TY1B-GR2Q12269 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-OLQ12273 1755 aa6.28□□□□□ -1.4
CDC48YDL126C TY1B-PLQ12414 1755 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C DBP1P24784 617 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C GLN1P32288 370 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C HAA1Q12753 694 aaKnown RBP6.28□□□□□ -1.4
CDC48YDL126C CDC25P04821 1589 aa6.27□□□□□ -1.41
CDC48YDL126C TFB3Q03290 321 aa6.27□□□□□ -1.41
CDC48YDL126C PKC1P24583 1151 aa6.26□□□□□ -1.41
CDC48YDL126C MIF2P35201 549 aa6.26□□□□□ -1.41
CDC48YDL126C YFR006WP43590 535 aa6.26□□□□□ -1.41
CDC48YDL126C YLR326WQ06170 240 aaKnown RBP6.25□□□□□ -1.41
CDC48YDL126C NST1P53935 1240 aa6.25□□□□□ -1.41
CDC48YDL126C KTR1P27810 393 aaKnown RBP6.24□□□□□ -1.41
CDC48YDL126C SOL3P38858 249 aa6.24□□□□□ -1.41
CDC48YDL126C SNQ2P32568 1501 aaKnown RBP6.24□□□□□ -1.41
CDC48YDL126C MLP2P40457 1679 aa6.23□□□□□ -1.41
CDC48YDL126C NSR1P27476 414 aaKnown RBP RIP-Chip data6.23□□□□□ -1.41not detected
CDC48YDL126C SUB2Q07478 446 aaKnown RBP6.23□□□□□ -1.41
CDC48YDL126C SPP41P38904 1435 aa6.23□□□□□ -1.41
CDC48YDL126C ESC1Q03661 1658 aaKnown RBP6.22□□□□□ -1.41
CDC48YDL126C PAN1P32521 1480 aa6.21□□□□□ -1.42
CDC48YDL126C VTH1P40438 1549 aa6.2□□□□□ -1.42
CDC48YDL126C VTH2P40890 1549 aa6.2□□□□□ -1.42
CDC48YDL126C YML020WQ03722 664 aa6.2□□□□□ -1.42
CDC48YDL126C YOR238WQ08634 303 aa6.19□□□□□ -1.42
CDC48YDL126C SLX5P32828 619 aaKnown RBP6.18□□□□□ -1.42
CDC48YDL126C PCS60P38137 543 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42not detected
CDC48YDL126C ULS1Q08562 1619 aa6.18□□□□□ -1.42
CDC48YDL126C PDR15Q04182 1529 aaKnown RBP6.18□□□□□ -1.42
CDC48YDL126C STH1P32597 1359 aa6.18□□□□□ -1.42
CDC48YDL126C VHR2P40041 505 aa6.18□□□□□ -1.42
CDC48YDL126C TSC11P40061 1430 aa6.17□□□□□ -1.42
CDC48YDL126C TY1B-JR2P47100 1755 aaKnown RBP6.17□□□□□ -1.42
CDC48YDL126C TY1B-ER2Q03619 1755 aa6.17□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 19.7 ms