RNA–Protein interactions for RNA: ENST00000637278.1

CLN5-217, Transcript of CLN5, intracellular trafficking protein, humanhuman

TSL 2

Gene CLN5, Length 2,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN5-217ENST00000637278 RSF1Q96T23 1441 aaPredicted RBP12.16□□□□□ -0.46
CLN5-217ENST00000637278 CFTRP13569 1480 aa12.14□□□□□ -0.47
CLN5-217ENST00000637278 FANCD2Q9BXW9 1451 aa12.11□□□□□ -0.47
CLN5-217ENST00000637278 SENP3Q9H4L4 574 aaPredicted RBP12.11□□□□□ -0.47
CLN5-217ENST00000637278 NPM1P06748 294 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLN5-217ENST00000637278 ARID3AQ99856 593 aa12.08□□□□□ -0.48
CLN5-217ENST00000637278 ABCC8Q09428 1581 aa12□□□□□ -0.49
CLN5-217ENST00000637278 URB2Q14146 1524 aaKnown RBP11.98□□□□□ -0.49
CLN5-217ENST00000637278 CCDC88BA6NC98 1476 aa11.97□□□□□ -0.49
CLN5-217ENST00000637278 SCAF1Q9H7N4 1312 aaKnown RBP11.97□□□□□ -0.49
CLN5-217ENST00000637278 IGSF3O75054 1194 aa11.96□□□□□ -0.49
CLN5-217ENST00000637278 PKD2Q13563 968 aa11.96□□□□□ -0.49
CLN5-217ENST00000637278 IFT140Q96RY7 1462 aa11.95□□□□□ -0.5
CLN5-217ENST00000637278 DNMBPQ6XZF7 1577 aa11.92□□□□□ -0.5
CLN5-217ENST00000637278 NBR1Q14596 966 aa11.92□□□□□ -0.5
CLN5-217ENST00000637278 TOPBP1Q92547 1522 aa11.89□□□□□ -0.51
CLN5-217ENST00000637278 WDR97A6NE52 1622 aa11.88□□□□□ -0.51
CLN5-217ENST00000637278 FBXO3Q9UK99 471 aa11.86□□□□□ -0.51
CLN5-217ENST00000637278 UBE2Q2Q8WVN8 375 aa11.84□□□□□ -0.51
CLN5-217ENST00000637278 EIF4G3O43432 1585 aaKnown RBP11.83□□□□□ -0.52
CLN5-217ENST00000637278 OSCARQ8IYS5 282 aa11.83□□□□□ -0.52
CLN5-217ENST00000637278 CHMP4AQ9BY43 222 aa11.81□□□□□ -0.52
CLN5-217ENST00000637278 TARBP1Q13395 1621 aaKnown RBP11.81□□□□□ -0.52
CLN5-217ENST00000637278 DHX37Q8IY37 1157 aaKnown RBP11.8□□□□□ -0.52
CLN5-217ENST00000637278 ZNF428Q96B54 188 aa11.79□□□□□ -0.52
CLN5-217ENST00000637278 IFNLR1Q8IU57 520 aaPredicted RBP11.78□□□□□ -0.52
CLN5-217ENST00000637278 NECTIN2Q92692 538 aa11.77□□□□□ -0.53
CLN5-217ENST00000637278 ZNF608Q9ULD9 1512 aaPredicted RBP11.77□□□□□ -0.53
CLN5-217ENST00000637278 CENPBP07199 599 aaPredicted RBP11.76□□□□□ -0.53
CLN5-217ENST00000637278 POLA1P09884 1462 aaPredicted RBP11.75□□□□□ -0.53
CLN5-217ENST00000637278 C1orf115Q9H7X2 142 aa11.75□□□□□ -0.53
CLN5-217ENST00000637278 PDIA4P13667 645 aaKnown RBP11.74□□□□□ -0.53
CLN5-217ENST00000637278 ANO8Q9HCE9 1232 aaPredicted RBP11.74□□□□□ -0.53
CLN5-217ENST00000637278 CHD1O14646 1710 aa11.73□□□□□ -0.53
CLN5-217ENST00000637278 RIMBP3CA6NJZ7 1639 aa11.73□□□□□ -0.53
CLN5-217ENST00000637278 RIMBP3BA6NNM3 1639 aa11.73□□□□□ -0.53
CLN5-217ENST00000637278 RIMBP3Q9UFD9 1639 aa11.73□□□□□ -0.53
CLN5-217ENST00000637278 ARID3CA6NKF2 412 aa11.73□□□□□ -0.53
CLN5-217ENST00000637278 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.71□□□□□ -0.54
CLN5-217ENST00000637278 PKNOX2Q96KN3 472 aa11.69□□□□□ -0.54
CLN5-217ENST00000637278 FGD5Q6ZNL6 1462 aa11.69□□□□□ -0.54
CLN5-217ENST00000637278 MAGI1Q96QZ7 1491 aaPredicted RBP11.69□□□□□ -0.54
CLN5-217ENST00000637278 SOGA1O94964 1423 aa11.69□□□□□ -0.54
CLN5-217ENST00000637278 TRIM41Q8WV44 630 aa11.68□□□□□ -0.54
CLN5-217ENST00000637278 ARHGEF11O15085 1522 aa11.68□□□□□ -0.54
CLN5-217ENST00000637278 BRPF1P55201 1214 aaPredicted RBP11.68□□□□□ -0.54
CLN5-217ENST00000637278 CUX1P39880 1505 aa11.68□□□□□ -0.54
CLN5-217ENST00000637278 SAMD1Q6SPF0 538 aaPredicted RBP11.67□□□□□ -0.54
CLN5-217ENST00000637278 AQRO60306 1485 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLN5-217ENST00000637278 SYNJ1O43426 1573 aa11.65□□□□□ -0.54
CLN5-217ENST00000637278 GRIN2BQ13224 1484 aa11.65□□□□□ -0.54
CLN5-217ENST00000637278 PBRM1Q86U86 1689 aa11.64□□□□□ -0.55
CLN5-217ENST00000637278 PDE4CQ08493 712 aa11.63□□□□□ -0.55
CLN5-217ENST00000637278 FOXD1Q16676 465 aa11.63□□□□□ -0.55
CLN5-217ENST00000637278 RAD54L2Q9Y4B4 1467 aa11.63□□□□□ -0.55
CLN5-217ENST00000637278 SNAPC4Q5SXM2 1469 aa11.62□□□□□ -0.55
CLN5-217ENST00000637278 CLASP1Q7Z460 1538 aa11.62□□□□□ -0.55
CLN5-217ENST00000637278 ABCA5Q8WWZ7 1642 aa11.61□□□□□ -0.55
CLN5-217ENST00000637278 BBXQ8WY36 941 aaPredicted RBP11.61□□□□□ -0.55
CLN5-217ENST00000637278 ABCA10Q8WWZ4 1543 aa11.61□□□□□ -0.55
CLN5-217ENST00000637278 BIVM-ERCC5R4GMW8 1640 aa11.61□□□□□ -0.55
CLN5-217ENST00000637278 SYNJ2O15056 1496 aa11.61□□□□□ -0.55
CLN5-217ENST00000637278 TOP2BQ02880 1626 aa11.58□□□□□ -0.56
CLN5-217ENST00000637278 GAPVD1Q14C86 1478 aa11.57□□□□□ -0.56
CLN5-217ENST00000637278 TDRD9Q8NDG6 1382 aaKnown RBP11.57□□□□□ -0.56
CLN5-217ENST00000637278 SPRYD3Q8NCJ5 442 aa11.57□□□□□ -0.56
CLN5-217ENST00000637278 SLC4A2P04920 1241 aa11.56□□□□□ -0.56
CLN5-217ENST00000637278 MAPK8IP2Q13387 824 aaPredicted RBP11.56□□□□□ -0.56
CLN5-217ENST00000637278 RGL2O15211 777 aa11.56□□□□□ -0.56
CLN5-217ENST00000637278 ATF5Q9Y2D1 282 aaPredicted RBP11.55□□□□□ -0.56
CLN5-217ENST00000637278 WRNQ14191 1432 aaPredicted RBP eCLIP11.55□□□□□ -0.56
CLN5-217ENST00000637278 ARAP1Q96P48 1450 aa11.55□□□□□ -0.56
CLN5-217ENST00000637278 VASPP50552 380 aaPredicted RBP11.53□□□□□ -0.56
CLN5-217ENST00000637278 ADAMTS12P58397 1594 aa11.52□□□□□ -0.56
CLN5-217ENST00000637278 PIAS4Q8N2W9 510 aaPredicted RBP11.52□□□□□ -0.57
CLN5-217ENST00000637278 CHMP7Q8WUX9 453 aaPredicted RBP11.52□□□□□ -0.57
CLN5-217ENST00000637278 ERICH3Q5RHP9 1530 aa11.51□□□□□ -0.57
CLN5-217ENST00000637278 CDK11BP21127 795 aaKnown RBP11.49□□□□□ -0.57
CLN5-217ENST00000637278 CDK11AQ9UQ88 783 aaPredicted RBP11.49□□□□□ -0.57
CLN5-217ENST00000637278 NEFLP07196 543 aa11.49□□□□□ -0.57
CLN5-217ENST00000637278 ANP32EQ9BTT0 268 aa11.48□□□□□ -0.57
CLN5-217ENST00000637278 GRIN2AQ12879 1464 aa11.48□□□□□ -0.57
CLN5-217ENST00000637278 BCL11BQ9C0K0 894 aaPredicted RBP11.47□□□□□ -0.57
CLN5-217ENST00000637278 CCDC9Q9Y3X0 531 aaKnown RBP11.47□□□□□ -0.57
CLN5-217ENST00000637278 FHAD1B1AJZ9 1412 aa11.47□□□□□ -0.57
CLN5-217ENST00000637278 FOXD4L5Q5VV16 416 aaPredicted RBP11.46□□□□□ -0.57
CLN5-217ENST00000637278 FOXD4L4Q8WXT5 416 aaPredicted RBP11.46□□□□□ -0.57
CLN5-217ENST00000637278 NUP160Q12769 1436 aa11.46□□□□□ -0.58
CLN5-217ENST00000637278 NEUROD2Q15784 382 aa11.46□□□□□ -0.58
CLN5-217ENST00000637278 SHROOM2Q13796 1616 aa11.45□□□□□ -0.58
CLN5-217ENST00000637278 CYB5RLQ6IPT4 315 aa11.44□□□□□ -0.58
CLN5-217ENST00000637278 CEP170Q5SW79 1584 aa11.42□□□□□ -0.58
CLN5-217ENST00000637278 ECM2O94769 699 aaPredicted RBP11.42□□□□□ -0.58
CLN5-217ENST00000637278 CHGAP10645 457 aaKnown RBP11.41□□□□□ -0.58
CLN5-217ENST00000637278 CUL7Q14999 1698 aa11.39□□□□□ -0.59
CLN5-217ENST00000637278 CNKSR2Q8WXI2 1034 aa11.39□□□□□ -0.59
CLN5-217ENST00000637278 CCDC136Q96JN2 1154 aa11.36□□□□□ -0.59
CLN5-217ENST00000637278 RUSC2Q8N2Y8 1516 aa11.36□□□□□ -0.59
CLN5-217ENST00000637278 MTMR7Q9Y216 660 aa11.35□□□□□ -0.59
CLN5-217ENST00000637278 PPARGC1BQ86YN6 1023 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms