RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 CADPSQ9ULU8 1353 aa19.09■□□□□ 0.65
VRK3-209ENST00000594948 PCF11O94913 1555 aaKnown RBP19.08■□□□□ 0.65
VRK3-209ENST00000594948 EFCAB5A4FU69 1503 aa19.08■□□□□ 0.64
VRK3-209ENST00000594948 SUPT16HQ9Y5B9 1047 aaKnown RBP19.07■□□□□ 0.64
VRK3-209ENST00000594948 TIMELESSQ9UNS1 1208 aa19.07■□□□□ 0.64
VRK3-209ENST00000594948 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.06■□□□□ 0.64
VRK3-209ENST00000594948 CC2D2AQ9P2K1 1620 aa19.05■□□□□ 0.64
VRK3-209ENST00000594948 AQRO60306 1485 aaKnown RBP eCLIP19.05■□□□□ 0.645e-7■■■■■ 54.7
VRK3-209ENST00000594948 CTTNBP2Q8WZ74 1663 aa19.04■□□□□ 0.64
VRK3-209ENST00000594948 FYCO1Q9BQS8 1478 aa19.03■□□□□ 0.64
VRK3-209ENST00000594948 CUL7Q14999 1698 aa19.03■□□□□ 0.64
VRK3-209ENST00000594948 PHLDB1Q86UU1 1377 aa19.02■□□□□ 0.64
VRK3-209ENST00000594948 WDR97A6NE52 1622 aa19■□□□□ 0.63
VRK3-209ENST00000594948 DNMBPQ6XZF7 1577 aa18.99■□□□□ 0.63
VRK3-209ENST00000594948 ABCA10Q8WWZ4 1543 aa18.97■□□□□ 0.63
VRK3-209ENST00000594948 CASKIN1Q8WXD9 1431 aa18.97■□□□□ 0.63
VRK3-209ENST00000594948 ITGAEP38570 1179 aa18.96■□□□□ 0.63
VRK3-209ENST00000594948 FANCD2Q9BXW9 1451 aa18.91■□□□□ 0.62
VRK3-209ENST00000594948 THOC2Q8NI27 1593 aaKnown RBP18.86■□□□□ 0.61
VRK3-209ENST00000594948 FMN1Q68DA7 1419 aa18.86■□□□□ 0.61
VRK3-209ENST00000594948 TOPBP1Q92547 1522 aa18.85■□□□□ 0.61
VRK3-209ENST00000594948 FHOD3Q2V2M9 1422 aa18.85■□□□□ 0.61
VRK3-209ENST00000594948 PPP1R15AO75807 674 aaPredicted RBP18.85■□□□□ 0.61
VRK3-209ENST00000594948 FAM50AQ14320 339 aaKnown RBP18.85■□□□□ 0.61
VRK3-209ENST00000594948 KIF21AQ7Z4S6 1674 aa18.85■□□□□ 0.61
VRK3-209ENST00000594948 SAMD9Q5K651 1589 aa18.84■□□□□ 0.61
VRK3-209ENST00000594948 CCER2I3L3R5 266 aa18.84■□□□□ 0.61
VRK3-209ENST00000594948 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
VRK3-209ENST00000594948 FGD6Q6ZV73 1430 aa18.83■□□□□ 0.61
VRK3-209ENST00000594948 SNAPC4Q5SXM2 1469 aa18.83■□□□□ 0.6
VRK3-209ENST00000594948 TSHZ2Q9NRE2 1034 aa18.81■□□□□ 0.6
VRK3-209ENST00000594948 PTPN23Q9H3S7 1636 aa18.81■□□□□ 0.6
VRK3-209ENST00000594948 SIN3AQ96ST3 1273 aa18.81■□□□□ 0.6
VRK3-209ENST00000594948 LRRIQ1Q96JM4 1722 aa18.81■□□□□ 0.6
VRK3-209ENST00000594948 CCDC18Q5T9S5 1454 aa18.79■□□□□ 0.6
VRK3-209ENST00000594948 HFM1A2PYH4 1435 aa18.79■□□□□ 0.6
VRK3-209ENST00000594948 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
VRK3-209ENST00000594948 UACAQ9BZF9 1416 aa18.78■□□□□ 0.6
VRK3-209ENST00000594948 DDX10Q13206 875 aaKnown RBP18.78■□□□□ 0.6
VRK3-209ENST00000594948 SUPT6HQ7KZ85 1726 aaKnown RBP18.78■□□□□ 0.6
VRK3-209ENST00000594948 KCNH8Q96L42 1107 aa18.77■□□□□ 0.6
VRK3-209ENST00000594948 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
VRK3-209ENST00000594948 EHBP1L1Q8N3D4 1523 aa18.74■□□□□ 0.59
VRK3-209ENST00000594948 GRIN2BQ13224 1484 aa18.73■□□□□ 0.59
VRK3-209ENST00000594948 LAMC3Q9Y6N6 1575 aa18.72■□□□□ 0.59
VRK3-209ENST00000594948 GCC2Q8IWJ2 1684 aa18.72■□□□□ 0.59
VRK3-209ENST00000594948 P3H3Q8IVL6 736 aa18.72■□□□□ 0.59
VRK3-209ENST00000594948 TONSLQ96HA7 1378 aa18.72■□□□□ 0.59
VRK3-209ENST00000594948 MYOM3Q5VTT5 1437 aa18.7■□□□□ 0.58
VRK3-209ENST00000594948 ANP32CO43423 234 aa18.7■□□□□ 0.58
VRK3-209ENST00000594948 ARHGEF11O15085 1522 aa18.69■□□□□ 0.58
VRK3-209ENST00000594948 MTUS2Q5JR59 1369 aa18.69■□□□□ 0.58
VRK3-209ENST00000594948 HECW1Q76N89 1606 aa18.69■□□□□ 0.58
VRK3-209ENST00000594948 NCOA2Q15596 1464 aa18.68■□□□□ 0.58
VRK3-209ENST00000594948 NAIPQ13075 1403 aa18.67■□□□□ 0.58
VRK3-209ENST00000594948 UGGT2Q9NYU1 1516 aa18.67■□□□□ 0.58
VRK3-209ENST00000594948 KDM5BQ9UGL1 1544 aa18.67■□□□□ 0.58
VRK3-209ENST00000594948 ATP1B4Q9UN42 357 aaPredicted RBP18.67■□□□□ 0.58
VRK3-209ENST00000594948 PTPRKQ15262 1439 aa18.67■□□□□ 0.58
VRK3-209ENST00000594948 TCOF1Q13428 1488 aaKnown RBP18.64■□□□□ 0.57
VRK3-209ENST00000594948 AKNAQ7Z591 1439 aa18.64■□□□□ 0.57
VRK3-209ENST00000594948 NEFLP07196 543 aa18.64■□□□□ 0.57
VRK3-209ENST00000594948 FKBP8Q14318 412 aa18.64■□□□□ 0.57
VRK3-209ENST00000594948 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
VRK3-209ENST00000594948 ANP32EQ9BTT0 268 aa18.62■□□□□ 0.57
VRK3-209ENST00000594948 NESP48681 1621 aa18.6■□□□□ 0.57
VRK3-209ENST00000594948 GAPVD1Q14C86 1478 aa18.59■□□□□ 0.57
VRK3-209ENST00000594948 MAGI3Q5TCQ9 1506 aa18.54■□□□□ 0.56
VRK3-209ENST00000594948 PBRM1Q86U86 1689 aa18.53■□□□□ 0.56
VRK3-209ENST00000594948 TARBP1Q13395 1621 aaKnown RBP18.52■□□□□ 0.56
VRK3-209ENST00000594948 POLR1AO95602 1720 aaPredicted RBP18.52■□□□□ 0.55
VRK3-209ENST00000594948 MIA2Q96PC5 1412 aa18.52■□□□□ 0.55
VRK3-209ENST00000594948 BCANQ96GW7 911 aa18.51■□□□□ 0.55
VRK3-209ENST00000594948 HIRIP3Q9BW71 556 aaPredicted RBP18.51■□□□□ 0.55
VRK3-209ENST00000594948 DENND4BO75064 1496 aaPredicted RBP18.49■□□□□ 0.55
VRK3-209ENST00000594948 TRIM52Q96A61 297 aa18.49■□□□□ 0.55
VRK3-209ENST00000594948 PDS5BQ9NTI5 1447 aa18.48■□□□□ 0.55
VRK3-209ENST00000594948 IQGAP2Q13576 1575 aa18.47■□□□□ 0.55
VRK3-209ENST00000594948 TDRD9Q8NDG6 1382 aaKnown RBP18.47■□□□□ 0.55
VRK3-209ENST00000594948 EPRSP07814 1512 aaKnown RBP18.45■□□□□ 0.54
VRK3-209ENST00000594948 WDR62O43379 1518 aa18.45■□□□□ 0.54
VRK3-209ENST00000594948 CNTLNQ9NXG0 1405 aa18.44■□□□□ 0.54
VRK3-209ENST00000594948 KDM6BO15054 1643 aa18.44■□□□□ 0.54
VRK3-209ENST00000594948 ERICH6BQ5W0A0 696 aa18.44■□□□□ 0.54
VRK3-209ENST00000594948 ADAMTS12P58397 1594 aa18.43■□□□□ 0.54
VRK3-209ENST00000594948 RBM19Q9Y4C8 960 aaKnown RBP18.43■□□□□ 0.54
VRK3-209ENST00000594948 WASHC2AQ641Q2 1341 aa18.4■□□□□ 0.54
VRK3-209ENST00000594948 ROCK1Q13464 1354 aa18.4■□□□□ 0.54
VRK3-209ENST00000594948 DNMT1P26358 1616 aaKnown RBP18.4■□□□□ 0.54
VRK3-209ENST00000594948 HSPA5P11021 654 aaKnown RBP18.39■□□□□ 0.54
VRK3-209ENST00000594948 NCOA1Q15788 1441 aa18.38■□□□□ 0.53
VRK3-209ENST00000594948 EIF4G2P78344 907 aaKnown RBP eCLIP18.38■□□□□ 0.531e-6■■■■■ 27.9
VRK3-209ENST00000594948 RPRD2Q5VT52 1461 aaKnown RBP18.36■□□□□ 0.53
VRK3-209ENST00000594948 HNRNPUQ00839 825 aaKnown RBP eCLIP18.35■□□□□ 0.53
VRK3-209ENST00000594948 MPHOSPH9Q99550 1183 aa18.34■□□□□ 0.53
VRK3-209ENST00000594948 RRP7BPQ9NSQ0 103 aa18.34■□□□□ 0.53
VRK3-209ENST00000594948 CDK13Q14004 1512 aaKnown RBP18.33■□□□□ 0.52
VRK3-209ENST00000594948 TEX14Q8IWB6 1497 aa18.33■□□□□ 0.52
VRK3-209ENST00000594948 CCDC7Q96M83 1385 aa18.33■□□□□ 0.52
VRK3-209ENST00000594948 DAPK1P53355 1430 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms