RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SYNJ1O43426 1573 aa12.81□□□□□ -0.36
VPS39-213ENST00000570062 CEP164Q9UPV0 1460 aa12.81□□□□□ -0.36
VPS39-213ENST00000570062 FAM9AQ8IZU1 332 aaPredicted RBP12.81□□□□□ -0.36
VPS39-213ENST00000570062 CUX1P39880 1505 aa12.78□□□□□ -0.36
VPS39-213ENST00000570062 PITPNM1O00562 1244 aa12.78□□□□□ -0.36
VPS39-213ENST00000570062 PIP4P2Q8N4L2 257 aa12.78□□□□□ -0.36
VPS39-213ENST00000570062 LOC105371045A0A1W2PR82 267 aa12.77□□□□□ -0.37
VPS39-213ENST00000570062 KIF27Q86VH2 1401 aa12.77□□□□□ -0.37
VPS39-213ENST00000570062 ERCC6Q03468 1493 aa12.77□□□□□ -0.37
VPS39-213ENST00000570062 SOGA1O94964 1423 aa12.76□□□□□ -0.37
VPS39-213ENST00000570062 NESP48681 1621 aa12.75□□□□□ -0.37
VPS39-213ENST00000570062 SPDYE2BA6NHP3 402 aa12.74□□□□□ -0.37
VPS39-213ENST00000570062 SPDYE6P0CI01 402 aa12.74□□□□□ -0.37
VPS39-213ENST00000570062 SPDYE2Q495Y8 402 aa12.74□□□□□ -0.37
VPS39-213ENST00000570062 DNMBPQ6XZF7 1577 aa12.73□□□□□ -0.37
VPS39-213ENST00000570062 TOPBP1Q92547 1522 aa12.7□□□□□ -0.38
VPS39-213ENST00000570062 TNIKQ9UKE5 1360 aa12.69□□□□□ -0.38
VPS39-213ENST00000570062 GOLGA3Q08378 1498 aa12.68□□□□□ -0.38
VPS39-213ENST00000570062 FGD5Q6ZNL6 1462 aa12.68□□□□□ -0.38
VPS39-213ENST00000570062 FXR2P51116 673 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS39-213ENST00000570062 MKRN4PQ13434 485 aaPredicted RBP12.67□□□□□ -0.38
VPS39-213ENST00000570062 SP7Q8TDD2 431 aaPredicted RBP12.66□□□□□ -0.38
VPS39-213ENST00000570062 MRC2Q9UBG0 1479 aa12.65□□□□□ -0.38
VPS39-213ENST00000570062 UBTFP17480 764 aaKnown RBP12.65□□□□□ -0.38
VPS39-213ENST00000570062 RUSC2Q8N2Y8 1516 aa12.64□□□□□ -0.39
VPS39-213ENST00000570062 ABCA10Q8WWZ4 1543 aa12.64□□□□□ -0.39
VPS39-213ENST00000570062 URB2Q14146 1524 aaKnown RBP12.63□□□□□ -0.39
VPS39-213ENST00000570062 KIF21BO75037 1637 aa12.63□□□□□ -0.39
VPS39-213ENST00000570062 POLA1P09884 1462 aaPredicted RBP12.63□□□□□ -0.39
VPS39-213ENST00000570062 PRXQ9BXM0 1461 aa12.61□□□□□ -0.39
VPS39-213ENST00000570062 HAX1O00165 279 aa12.61□□□□□ -0.39
VPS39-213ENST00000570062 ERICH3Q5RHP9 1530 aa12.61□□□□□ -0.39
VPS39-213ENST00000570062 IGF1RP08069 1367 aa12.6□□□□□ -0.39
VPS39-213ENST00000570062 ZNF692Q9BU19 519 aaPredicted RBP12.6□□□□□ -0.39
VPS39-213ENST00000570062 SPDYE1Q8NFV5 336 aaPredicted RBP12.56□□□□□ -0.4
VPS39-213ENST00000570062 CLEC11AQ9Y240 323 aa12.56□□□□□ -0.4
VPS39-213ENST00000570062 CARMIL1Q5VZK9 1371 aa12.56□□□□□ -0.4
VPS39-213ENST00000570062 IFT140Q96RY7 1462 aa12.55□□□□□ -0.4
VPS39-213ENST00000570062 WDR62O43379 1518 aa12.55□□□□□ -0.4
VPS39-213ENST00000570062 KIF21AQ7Z4S6 1674 aa12.54□□□□□ -0.4
VPS39-213ENST00000570062 SSUH2Q9Y2M2 353 aa12.54□□□□□ -0.4
VPS39-213ENST00000570062 WDR97A6NE52 1622 aa12.54□□□□□ -0.4
VPS39-213ENST00000570062 RAD54L2Q9Y4B4 1467 aa12.53□□□□□ -0.4
VPS39-213ENST00000570062 RAPGEF2Q9Y4G8 1499 aa12.53□□□□□ -0.4
VPS39-213ENST00000570062 CEP162Q5TB80 1403 aa12.52□□□□□ -0.41
VPS39-213ENST00000570062 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
VPS39-213ENST00000570062 GAPVD1Q14C86 1478 aa12.5□□□□□ -0.41
VPS39-213ENST00000570062 THOC2Q8NI27 1593 aaKnown RBP12.5□□□□□ -0.41
VPS39-213ENST00000570062 TDRD9Q8NDG6 1382 aaKnown RBP12.47□□□□□ -0.41
VPS39-213ENST00000570062 PRKAR2AP13861 404 aaKnown RBP12.47□□□□□ -0.41
VPS39-213ENST00000570062 CUL7Q14999 1698 aa12.47□□□□□ -0.41
VPS39-213ENST00000570062 CLIP1P30622 1438 aa12.45□□□□□ -0.42
VPS39-213ENST00000570062 TARBP1Q13395 1621 aaKnown RBP12.45□□□□□ -0.42
VPS39-213ENST00000570062 GRIN2BQ13224 1484 aa12.45□□□□□ -0.42
VPS39-213ENST00000570062 ABCA5Q8WWZ7 1642 aa12.44□□□□□ -0.42
VPS39-213ENST00000570062 FHAD1B1AJZ9 1412 aa12.43□□□□□ -0.42
VPS39-213ENST00000570062 EVX2Q03828 476 aa12.41□□□□□ -0.42
VPS39-213ENST00000570062 TRIM26Q12899 539 aaPredicted RBP12.39□□□□□ -0.43
VPS39-213ENST00000570062 AQRO60306 1485 aaKnown RBP eCLIP12.37□□□□□ -0.434e-6■■□□□ 11.8
VPS39-213ENST00000570062 VPS8Q8N3P4 1428 aa12.37□□□□□ -0.43
VPS39-213ENST00000570062 MAGI1Q96QZ7 1491 aaPredicted RBP12.34□□□□□ -0.43
VPS39-213ENST00000570062 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
VPS39-213ENST00000570062 EFCAB5A4FU69 1503 aa12.32□□□□□ -0.44
VPS39-213ENST00000570062 CHADLQ6NUI6 762 aa12.31□□□□□ -0.44
VPS39-213ENST00000570062 ZNF608Q9ULD9 1512 aaPredicted RBP12.31□□□□□ -0.44
VPS39-213ENST00000570062 RIMBP3CA6NJZ7 1639 aa12.3□□□□□ -0.44
VPS39-213ENST00000570062 RIMBP3BA6NNM3 1639 aa12.3□□□□□ -0.44
VPS39-213ENST00000570062 RIMBP3Q9UFD9 1639 aa12.3□□□□□ -0.44
VPS39-213ENST00000570062 CHMP7Q8WUX9 453 aaPredicted RBP12.3□□□□□ -0.44
VPS39-213ENST00000570062 ADAMTS12P58397 1594 aa12.28□□□□□ -0.44
VPS39-213ENST00000570062 C19orf67A6NJJ6 358 aa12.28□□□□□ -0.44
VPS39-213ENST00000570062 SYNJ2O15056 1496 aa12.27□□□□□ -0.44
VPS39-213ENST00000570062 ARHGAP35Q9NRY4 1499 aa12.27□□□□□ -0.44
VPS39-213ENST00000570062 PBRM1Q86U86 1689 aa12.27□□□□□ -0.45
VPS39-213ENST00000570062 RANGAP1P46060 587 aaPredicted RBP12.27□□□□□ -0.45
VPS39-213ENST00000570062 SNAPC4Q5SXM2 1469 aa12.27□□□□□ -0.45
VPS39-213ENST00000570062 EIF4G3O43432 1585 aaKnown RBP12.26□□□□□ -0.45
VPS39-213ENST00000570062 FMN1Q68DA7 1419 aa12.25□□□□□ -0.45
VPS39-213ENST00000570062 KIAA0586Q9BVV6 1533 aa12.25□□□□□ -0.45
VPS39-213ENST00000570062 GRIN2AQ12879 1464 aa12.24□□□□□ -0.45
VPS39-213ENST00000570062 ARAP1Q96P48 1450 aa12.24□□□□□ -0.45
VPS39-213ENST00000570062 PCGF6Q9BYE7 350 aa12.24□□□□□ -0.45
VPS39-213ENST00000570062 MAP3K1Q13233 1512 aa12.22□□□□□ -0.45
VPS39-213ENST00000570062 CTTNBP2Q8WZ74 1663 aa12.21□□□□□ -0.45
VPS39-213ENST00000570062 ILDR1Q86SU0 546 aaPredicted RBP12.2□□□□□ -0.46
VPS39-213ENST00000570062 IQGAP2Q13576 1575 aa12.18□□□□□ -0.46
VPS39-213ENST00000570062 NUP160Q12769 1436 aa12.18□□□□□ -0.46
VPS39-213ENST00000570062 UGGT2Q9NYU1 1516 aa12.17□□□□□ -0.46
VPS39-213ENST00000570062 CARMIL2Q6F5E8 1435 aa12.17□□□□□ -0.46
VPS39-213ENST00000570062 CASKIN1Q8WXD9 1431 aa12.17□□□□□ -0.46
VPS39-213ENST00000570062 FYCO1Q9BQS8 1478 aa12.15□□□□□ -0.46
VPS39-213ENST00000570062 SAMD9Q5K651 1589 aa12.15□□□□□ -0.46
VPS39-213ENST00000570062 GABBR2O75899 941 aa12.14□□□□□ -0.47
VPS39-213ENST00000570062 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
VPS39-213ENST00000570062 JPH4Q96JJ6 628 aa12.14□□□□□ -0.47
VPS39-213ENST00000570062 ARHGEF11O15085 1522 aa12.13□□□□□ -0.47
VPS39-213ENST00000570062 FHOD3Q2V2M9 1422 aa12.12□□□□□ -0.47
VPS39-213ENST00000570062 FARP1Q9Y4F1 1045 aaPredicted RBP12.11□□□□□ -0.47
VPS39-213ENST00000570062 PPARGC1BQ86YN6 1023 aaKnown RBP12.09□□□□□ -0.47
VPS39-213ENST00000570062 ATP1B4Q9UN42 357 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms