RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 AEBP2Q6ZN18 517 aaPredicted RBP23.51■■□□□ 1.35
VPS39-213ENST00000570062 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
VPS39-213ENST00000570062 SENP3Q9H4L4 574 aaPredicted RBP20.11■□□□□ 0.81
VPS39-213ENST00000570062 PHF23Q9BUL5 403 aaPredicted RBP19.83■□□□□ 0.77
VPS39-213ENST00000570062 FOXD1Q16676 465 aa18.74■□□□□ 0.59
VPS39-213ENST00000570062 NISCHQ9Y2I1 1504 aa17.8■□□□□ 0.44
VPS39-213ENST00000570062 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
VPS39-213ENST00000570062 MSH5O43196 834 aa17.59■□□□□ 0.41
VPS39-213ENST00000570062 PIAS4Q8N2W9 510 aaPredicted RBP17.51■□□□□ 0.39
VPS39-213ENST00000570062 PPP6R1Q9UPN7 881 aa17.45■□□□□ 0.38
VPS39-213ENST00000570062 ADRA2BP18089 450 aa17.4■□□□□ 0.38
VPS39-213ENST00000570062 POTEDQ86YR6 584 aa17.31■□□□□ 0.36
VPS39-213ENST00000570062 MAPK8IP2Q13387 824 aaPredicted RBP16.01■□□□□ 0.15
VPS39-213ENST00000570062 SCAF1Q9H7N4 1312 aaKnown RBP15.95■□□□□ 0.14
VPS39-213ENST00000570062 DMRT2Q9Y5R5 561 aa15.91■□□□□ 0.14
VPS39-213ENST00000570062 PPP4R3CPQ6ZMV5 832 aa15.56■□□□□ 0.08
VPS39-213ENST00000570062 CCDC180Q9P1Z9 1646 aa15.51■□□□□ 0.07
VPS39-213ENST00000570062 DCAF8L1A6NGE4 600 aa15.32■□□□□ 0.04
VPS39-213ENST00000570062 HOXD11P31277 338 aaPredicted RBP15.29■□□□□ 0.04
VPS39-213ENST00000570062 CNKSR2Q8WXI2 1034 aa15.28■□□□□ 0.04
VPS39-213ENST00000570062 CACNB1Q02641 598 aaPredicted RBP15.17■□□□□ 0.02
VPS39-213ENST00000570062 RNF216Q9NWF9 866 aaPredicted RBP15.16■□□□□ 0.02
VPS39-213ENST00000570062 RNF39Q9H2S5 420 aa14.98□□□□□ -0.01
VPS39-213ENST00000570062 NCBP3Q53F19 620 aaKnown RBP14.95□□□□□ -0.02
VPS39-213ENST00000570062 ZCCHC6Q5VYS8 1495 aaKnown RBP14.94□□□□□ -0.02
VPS39-213ENST00000570062 DCAF1Q9Y4B6 1507 aa14.83□□□□□ -0.04
VPS39-213ENST00000570062 C1QBPQ07021 282 aaKnown RBP14.78□□□□□ -0.04
VPS39-213ENST00000570062 DNAJC5BQ9UF47 199 aa14.78□□□□□ -0.04
VPS39-213ENST00000570062 ABCC9O60706 1549 aa14.74□□□□□ -0.05
VPS39-213ENST00000570062 MYO15BQ96JP2 1530 aa14.71□□□□□ -0.06
VPS39-213ENST00000570062 NPM3O75607 178 aaKnown RBP14.7□□□□□ -0.06
VPS39-213ENST00000570062 DCAF8L2P0C7V8 631 aa14.7□□□□□ -0.06
VPS39-213ENST00000570062 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS39-213ENST00000570062 NACADO15069 1562 aa14.54□□□□□ -0.08
VPS39-213ENST00000570062 RB1CC1Q8TDY2 1594 aa14.38□□□□□ -0.11
VPS39-213ENST00000570062 SHROOM4Q9ULL8 1493 aa14.36□□□□□ -0.11
VPS39-213ENST00000570062 KCNA4P22459 653 aa14.34□□□□□ -0.11
VPS39-213ENST00000570062 U3KPZ7 1027 aaPredicted RBP14.25□□□□□ -0.13
VPS39-213ENST00000570062 SCRIBQ14160 1630 aa14.13□□□□□ -0.15
VPS39-213ENST00000570062 CAPN15O75808 1086 aa14.1□□□□□ -0.15
VPS39-213ENST00000570062 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
VPS39-213ENST00000570062 SLC4A2P04920 1241 aa14.06□□□□□ -0.16
VPS39-213ENST00000570062 DNAJC5Q9H3Z4 198 aa14.02□□□□□ -0.17
VPS39-213ENST00000570062 DSG3P32926 999 aa14□□□□□ -0.17
VPS39-213ENST00000570062 SUPT5HO00267 1087 aaKnown RBP13.93□□□□□ -0.18
VPS39-213ENST00000570062 APLP2Q06481 763 aa13.89□□□□□ -0.19
VPS39-213ENST00000570062 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
VPS39-213ENST00000570062 TRHP20396 242 aaPredicted RBP13.85□□□□□ -0.19
VPS39-213ENST00000570062 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
VPS39-213ENST00000570062 RSF1Q96T23 1441 aaPredicted RBP13.81□□□□□ -0.2
VPS39-213ENST00000570062 ZNF219Q9P2Y4 722 aaPredicted RBP13.8□□□□□ -0.2
VPS39-213ENST00000570062 BAZ1AQ9NRL2 1556 aaPredicted RBP13.79□□□□□ -0.2
VPS39-213ENST00000570062 BICRAQ9NZM4 1560 aa13.79□□□□□ -0.2
VPS39-213ENST00000570062 UNC13AQ9UPW8 1703 aa13.78□□□□□ -0.2
VPS39-213ENST00000570062 PABPN1Q86U42 306 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS39-213ENST00000570062 SAMD1Q6SPF0 538 aaPredicted RBP13.76□□□□□ -0.21
VPS39-213ENST00000570062 ABCB7O75027 752 aa13.75□□□□□ -0.21
VPS39-213ENST00000570062 CECR2Q9BXF3 1484 aa13.72□□□□□ -0.21
VPS39-213ENST00000570062 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
VPS39-213ENST00000570062 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
VPS39-213ENST00000570062 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
VPS39-213ENST00000570062 POTEHQ6S545 545 aa13.56□□□□□ -0.24
VPS39-213ENST00000570062 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
VPS39-213ENST00000570062 SLC4A1APQ9BWU0 796 aaKnown RBP13.53□□□□□ -0.24
VPS39-213ENST00000570062 SMARCA2P51531 1590 aa13.52□□□□□ -0.25
VPS39-213ENST00000570062 TOP2AP11388 1531 aaKnown RBP13.49□□□□□ -0.25
VPS39-213ENST00000570062 WIZO95785 1651 aa13.48□□□□□ -0.25
VPS39-213ENST00000570062 ATAD2BQ9ULI0 1458 aa13.47□□□□□ -0.25
VPS39-213ENST00000570062 POLA2Q14181 598 aa13.46□□□□□ -0.25
VPS39-213ENST00000570062 EIF4G1Q04637 1599 aaKnown RBP13.44□□□□□ -0.26
VPS39-213ENST00000570062 NCAPD3P42695 1498 aa13.43□□□□□ -0.26
VPS39-213ENST00000570062 FOXD4L1Q9NU39 408 aa13.41□□□□□ -0.26
VPS39-213ENST00000570062 BAZ1BQ9UIG0 1483 aaKnown RBP13.4□□□□□ -0.26
VPS39-213ENST00000570062 RBM42Q9BTD8 480 aaKnown RBP13.39□□□□□ -0.27
VPS39-213ENST00000570062 HMGXB3Q12766 1538 aa13.35□□□□□ -0.27
VPS39-213ENST00000570062 CCDC88BA6NC98 1476 aa13.34□□□□□ -0.27
VPS39-213ENST00000570062 CC2D2AQ9P2K1 1620 aa13.28□□□□□ -0.28
VPS39-213ENST00000570062 ATF5Q9Y2D1 282 aaPredicted RBP13.28□□□□□ -0.28
VPS39-213ENST00000570062 TRIM41Q8WV44 630 aa13.22□□□□□ -0.29
VPS39-213ENST00000570062 ZBTB12Q9Y330 459 aaPredicted RBP13.16□□□□□ -0.3
VPS39-213ENST00000570062 ZBTB22O15209 634 aa13.15□□□□□ -0.3
VPS39-213ENST00000570062 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
VPS39-213ENST00000570062 CFTRP13569 1480 aa13.09□□□□□ -0.31
VPS39-213ENST00000570062 CADPSQ9ULU8 1353 aa13.08□□□□□ -0.31
VPS39-213ENST00000570062 AKT1S1Q96B36 256 aa13.05□□□□□ -0.32
VPS39-213ENST00000570062 WRNQ14191 1432 aaPredicted RBP eCLIP13.03□□□□□ -0.32
VPS39-213ENST00000570062 CUX2O14529 1486 aa13.03□□□□□ -0.32
VPS39-213ENST00000570062 ATXN8OSP0DMR3 200 aa13.01□□□□□ -0.33
VPS39-213ENST00000570062 OSCARQ8IYS5 282 aa13□□□□□ -0.33
VPS39-213ENST00000570062 EEA1Q15075 1411 aa12.98□□□□□ -0.33
VPS39-213ENST00000570062 LAMC3Q9Y6N6 1575 aa12.93□□□□□ -0.34
VPS39-213ENST00000570062 REM2Q8IYK8 340 aaPredicted RBP12.92□□□□□ -0.34
VPS39-213ENST00000570062 PDS5BQ9NTI5 1447 aa12.92□□□□□ -0.34
VPS39-213ENST00000570062 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
VPS39-213ENST00000570062 FANCD2Q9BXW9 1451 aa12.87□□□□□ -0.35
VPS39-213ENST00000570062 TOP2BQ02880 1626 aa12.87□□□□□ -0.35
VPS39-213ENST00000570062 PRDM2Q13029 1718 aa12.85□□□□□ -0.35
VPS39-213ENST00000570062 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
VPS39-213ENST00000570062 BIVM-ERCC5R4GMW8 1640 aa12.82□□□□□ -0.36
VPS39-213ENST00000570062 FBLN2P98095 1184 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms