RNA–Protein interactions for RNA: ENST00000542068.5

CNOT9-208, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CNOT9, Length 3,259 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-208ENST00000542068 FGD5Q6ZNL6 1462 aa21.9■■□□□ 1.1
CNOT9-208ENST00000542068 ARHGAP35Q9NRY4 1499 aa21.9■■□□□ 1.1
CNOT9-208ENST00000542068 FKBP8Q14318 412 aa21.9■■□□□ 1.1
CNOT9-208ENST00000542068 RAD54L2Q9Y4B4 1467 aa21.87■■□□□ 1.09
CNOT9-208ENST00000542068 RAB3GAP2Q9H2M9 1393 aa21.87■■□□□ 1.09
CNOT9-208ENST00000542068 BIVM-ERCC5R4GMW8 1640 aa21.86■■□□□ 1.09
CNOT9-208ENST00000542068 TRIM52Q96A61 297 aa21.85■■□□□ 1.09
CNOT9-208ENST00000542068 ERICH3Q5RHP9 1530 aa21.85■■□□□ 1.09
CNOT9-208ENST00000542068 NESP48681 1621 aa21.85■■□□□ 1.09
CNOT9-208ENST00000542068 TDRD9Q8NDG6 1382 aaKnown RBP21.82■■□□□ 1.08
CNOT9-208ENST00000542068 FHOD3Q2V2M9 1422 aa21.81■■□□□ 1.08
CNOT9-208ENST00000542068 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
CNOT9-208ENST00000542068 RRBP1Q9P2E9 1410 aaKnown RBP21.78■■□□□ 1.08
CNOT9-208ENST00000542068 CC2D2AQ9P2K1 1620 aa21.75■■□□□ 1.07
CNOT9-208ENST00000542068 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
CNOT9-208ENST00000542068 PHLDB1Q86UU1 1377 aa21.72■■□□□ 1.07
CNOT9-208ENST00000542068 NEFLP07196 543 aa21.7■■□□□ 1.07
CNOT9-208ENST00000542068 MTUS2Q5JR59 1369 aa21.67■■□□□ 1.06
CNOT9-208ENST00000542068 SETD5Q9C0A6 1442 aa21.65■■□□□ 1.06
CNOT9-208ENST00000542068 ANP32EQ9BTT0 268 aa21.64■■□□□ 1.05
CNOT9-208ENST00000542068 ANP32CO43423 234 aa21.63■■□□□ 1.05
CNOT9-208ENST00000542068 RRP7BPQ9NSQ0 103 aa21.62■■□□□ 1.05
CNOT9-208ENST00000542068 WDR97A6NE52 1622 aa21.61■■□□□ 1.05
CNOT9-208ENST00000542068 IRX6P78412 446 aaPredicted RBP21.61■■□□□ 1.05
CNOT9-208ENST00000542068 FHAD1B1AJZ9 1412 aa21.61■■□□□ 1.05
CNOT9-208ENST00000542068 MAPKBP1O60336 1514 aa21.61■■□□□ 1.05
CNOT9-208ENST00000542068 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.05
CNOT9-208ENST00000542068 FBLN2P98095 1184 aa21.58■■□□□ 1.05
CNOT9-208ENST00000542068 LRRC9Q6ZRR7 1453 aa21.58■■□□□ 1.04
CNOT9-208ENST00000542068 CNGB1Q14028 1251 aaPredicted RBP21.58■■□□□ 1.04
CNOT9-208ENST00000542068 PPP1R15AO75807 674 aaPredicted RBP21.55■■□□□ 1.04
CNOT9-208ENST00000542068 TOPBP1Q92547 1522 aa21.54■■□□□ 1.04
CNOT9-208ENST00000542068 TIAM1Q13009 1591 aa21.51■■□□□ 1.03
CNOT9-208ENST00000542068 RBM19Q9Y4C8 960 aaKnown RBP21.5■■□□□ 1.03
CNOT9-208ENST00000542068 TONSLQ96HA7 1378 aa21.48■■□□□ 1.03
CNOT9-208ENST00000542068 HNRNPUQ00839 825 aaKnown RBP eCLIP21.47■■□□□ 1.03
CNOT9-208ENST00000542068 PCF11O94913 1555 aaKnown RBP21.44■■□□□ 1.02
CNOT9-208ENST00000542068 FOXD1Q16676 465 aa21.43■■□□□ 1.02
CNOT9-208ENST00000542068 ZNF777Q9ULD5 760 aaPredicted RBP21.4■■□□□ 1.02
CNOT9-208ENST00000542068 DNMBPQ6XZF7 1577 aa21.39■■□□□ 1.01
CNOT9-208ENST00000542068 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
CNOT9-208ENST00000542068 POLR3GLQ9BT43 218 aa21.39■■□□□ 1.01
CNOT9-208ENST00000542068 ABCA10Q8WWZ4 1543 aa21.38■■□□□ 1.01
CNOT9-208ENST00000542068 FMN1Q68DA7 1419 aa21.38■■□□□ 1.01
CNOT9-208ENST00000542068 PDS5BQ9NTI5 1447 aa21.38■■□□□ 1.01
CNOT9-208ENST00000542068 URB2Q14146 1524 aaKnown RBP21.38■■□□□ 1.01
CNOT9-208ENST00000542068 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.012e-7■■■■■ 39.2
CNOT9-208ENST00000542068 CCER2I3L3R5 266 aa21.35■■□□□ 1.01
CNOT9-208ENST00000542068 CASKIN1Q8WXD9 1431 aa21.33■■□□□ 1
CNOT9-208ENST00000542068 ZNF326Q5BKZ1 582 aaKnown RBP21.32■■□□□ 1
CNOT9-208ENST00000542068 FGD6Q6ZV73 1430 aa21.31■■□□□ 1
CNOT9-208ENST00000542068 SENP3-EIF4A1A0A087X0R7 540 aa21.3■■□□□ 1
CNOT9-208ENST00000542068 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
CNOT9-208ENST00000542068 FAM9BQ8IZU0 186 aa21.27■■□□□ 1
CNOT9-208ENST00000542068 BCL11AQ9H165 835 aa21.27■■□□□ 1
CNOT9-208ENST00000542068 FYCO1Q9BQS8 1478 aa21.27■□□□□ 0.99
CNOT9-208ENST00000542068 PRDM2Q13029 1718 aa21.25■□□□□ 0.99
CNOT9-208ENST00000542068 ERICH6Q7L0X2 663 aa21.25■□□□□ 0.99
CNOT9-208ENST00000542068 HSPA5P11021 654 aaKnown RBP21.24■□□□□ 0.99
CNOT9-208ENST00000542068 CCDC18Q5T9S5 1454 aa21.23■□□□□ 0.99
CNOT9-208ENST00000542068 PTPRKQ15262 1439 aa21.23■□□□□ 0.99
CNOT9-208ENST00000542068 CCDC184Q52MB2 194 aa21.23■□□□□ 0.99
CNOT9-208ENST00000542068 MSH5O43196 834 aa21.23■□□□□ 0.99
CNOT9-208ENST00000542068 CDK11AQ9UQ88 783 aaPredicted RBP21.23■□□□□ 0.99
CNOT9-208ENST00000542068 CHMP7Q8WUX9 453 aaPredicted RBP21.23■□□□□ 0.99
CNOT9-208ENST00000542068 NCOA2Q15596 1464 aa21.22■□□□□ 0.99
CNOT9-208ENST00000542068 ZNF644Q9H582 1327 aaPredicted RBP21.22■□□□□ 0.99
CNOT9-208ENST00000542068 MAP3K1Q13233 1512 aa21.19■□□□□ 0.98
CNOT9-208ENST00000542068 WASHC2AQ641Q2 1341 aa21.16■□□□□ 0.98
CNOT9-208ENST00000542068 SLC4A1APQ9BWU0 796 aaKnown RBP21.16■□□□□ 0.98
CNOT9-208ENST00000542068 EFCAB5A4FU69 1503 aa21.16■□□□□ 0.98
CNOT9-208ENST00000542068 MYOM3Q5VTT5 1437 aa21.15■□□□□ 0.98
CNOT9-208ENST00000542068 B4GALNT3Q6L9W6 998 aa21.14■□□□□ 0.98
CNOT9-208ENST00000542068 MPHOSPH9Q99550 1183 aa21.14■□□□□ 0.97
CNOT9-208ENST00000542068 MRS2Q9HD23 443 aa21.12■□□□□ 0.97
CNOT9-208ENST00000542068 EIF4G2P78344 907 aaKnown RBP eCLIP21.11■□□□□ 0.97
CNOT9-208ENST00000542068 LAMC3Q9Y6N6 1575 aa21.11■□□□□ 0.97
CNOT9-208ENST00000542068 L3MBTL2Q969R5 705 aa21.1■□□□□ 0.97
CNOT9-208ENST00000542068 CUL7Q14999 1698 aa21.1■□□□□ 0.97
CNOT9-208ENST00000542068 CDK13Q14004 1512 aaKnown RBP21.1■□□□□ 0.97
CNOT9-208ENST00000542068 SNAPC4Q5SXM2 1469 aa21.09■□□□□ 0.97
CNOT9-208ENST00000542068 UACAQ9BZF9 1416 aa21.09■□□□□ 0.97
CNOT9-208ENST00000542068 CFDP1Q9UEE9 299 aaPredicted RBP21.09■□□□□ 0.97
CNOT9-208ENST00000542068 NAIPQ13075 1403 aa21.08■□□□□ 0.97
CNOT9-208ENST00000542068 C11orf95C9JLR9 678 aaPredicted RBP21.08■□□□□ 0.97
CNOT9-208ENST00000542068 CFAP43Q8NDM7 1665 aa21.06■□□□□ 0.96
CNOT9-208ENST00000542068 ZNF608Q9ULD9 1512 aaPredicted RBP21.05■□□□□ 0.96
CNOT9-208ENST00000542068 HFM1A2PYH4 1435 aa21.05■□□□□ 0.96
CNOT9-208ENST00000542068 CTTNBP2Q8WZ74 1663 aa21.03■□□□□ 0.96
CNOT9-208ENST00000542068 ERCC6Q03468 1493 aa21.03■□□□□ 0.96
CNOT9-208ENST00000542068 KIF21AQ7Z4S6 1674 aa21.02■□□□□ 0.96
CNOT9-208ENST00000542068 KDM2AQ9Y2K7 1162 aa21■□□□□ 0.95
CNOT9-208ENST00000542068 GRIN2BQ13224 1484 aa20.99■□□□□ 0.95
CNOT9-208ENST00000542068 PPP4R2Q9NY27 417 aa20.98■□□□□ 0.95
CNOT9-208ENST00000542068 PTPN23Q9H3S7 1636 aa20.98■□□□□ 0.95
CNOT9-208ENST00000542068 PRKRIP1Q9H875 184 aaPredicted RBP20.96■□□□□ 0.95
CNOT9-208ENST00000542068 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.96■□□□□ 0.95
CNOT9-208ENST00000542068 EPRSP07814 1512 aaKnown RBP20.96■□□□□ 0.95
CNOT9-208ENST00000542068 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
CNOT9-208ENST00000542068 NBPF8Q3BBV2 869 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms