RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 ITGAEP38570 1179 aa13.94□□□□□ -0.18
CDH13-204ENST00000539548 SUPT16HQ9Y5B9 1047 aaKnown RBP13.93□□□□□ -0.18
CDH13-204ENST00000539548 CADPSQ9ULU8 1353 aa13.92□□□□□ -0.18
CDH13-204ENST00000539548 FHAD1B1AJZ9 1412 aa13.9□□□□□ -0.18
CDH13-204ENST00000539548 FGD5Q6ZNL6 1462 aa13.9□□□□□ -0.18
CDH13-204ENST00000539548 CFAP43Q8NDM7 1665 aa13.9□□□□□ -0.18
CDH13-204ENST00000539548 PHLDB1Q86UU1 1377 aa13.89□□□□□ -0.19
CDH13-204ENST00000539548 TIMELESSQ9UNS1 1208 aa13.87□□□□□ -0.19
CDH13-204ENST00000539548 PCF11O94913 1555 aaKnown RBP13.84□□□□□ -0.19
CDH13-204ENST00000539548 WDR97A6NE52 1622 aa13.84□□□□□ -0.19
CDH13-204ENST00000539548 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.83□□□□□ -0.19
CDH13-204ENST00000539548 FAM50AQ14320 339 aaKnown RBP13.82□□□□□ -0.2
CDH13-204ENST00000539548 EFCAB5A4FU69 1503 aa13.81□□□□□ -0.2
CDH13-204ENST00000539548 AQRO60306 1485 aaKnown RBP eCLIP13.81□□□□□ -0.2
CDH13-204ENST00000539548 FYCO1Q9BQS8 1478 aa13.81□□□□□ -0.2
CDH13-204ENST00000539548 SIN3AQ96ST3 1273 aa13.81□□□□□ -0.2
CDH13-204ENST00000539548 KCNH8Q96L42 1107 aa13.8□□□□□ -0.2
CDH13-204ENST00000539548 CASKIN1Q8WXD9 1431 aa13.79□□□□□ -0.2
CDH13-204ENST00000539548 ABCA10Q8WWZ4 1543 aa13.78□□□□□ -0.2
CDH13-204ENST00000539548 DNMBPQ6XZF7 1577 aa13.78□□□□□ -0.2
CDH13-204ENST00000539548 PPP1R15AO75807 674 aaPredicted RBP13.78□□□□□ -0.2
CDH13-204ENST00000539548 FANCD2Q9BXW9 1451 aa13.77□□□□□ -0.2
CDH13-204ENST00000539548 DDX10Q13206 875 aaKnown RBP13.77□□□□□ -0.21
CDH13-204ENST00000539548 P3H3Q8IVL6 736 aa13.76□□□□□ -0.21
CDH13-204ENST00000539548 FHOD3Q2V2M9 1422 aa13.76□□□□□ -0.21
CDH13-204ENST00000539548 CUL7Q14999 1698 aa13.76□□□□□ -0.21
CDH13-204ENST00000539548 CTTNBP2Q8WZ74 1663 aa13.76□□□□□ -0.21
CDH13-204ENST00000539548 TSHZ2Q9NRE2 1034 aa13.75□□□□□ -0.21
CDH13-204ENST00000539548 ATP1B4Q9UN42 357 aaPredicted RBP13.73□□□□□ -0.21
CDH13-204ENST00000539548 ERCC6Q03468 1493 aa13.73□□□□□ -0.21
CDH13-204ENST00000539548 CCER2I3L3R5 266 aa13.73□□□□□ -0.21
CDH13-204ENST00000539548 RAD54L2Q9Y4B4 1467 aa13.73□□□□□ -0.21
CDH13-204ENST00000539548 TOPBP1Q92547 1522 aa13.72□□□□□ -0.21
CDH13-204ENST00000539548 POLA1P09884 1462 aaPredicted RBP13.72□□□□□ -0.21
CDH13-204ENST00000539548 FMN1Q68DA7 1419 aa13.71□□□□□ -0.21
CDH13-204ENST00000539548 FGD6Q6ZV73 1430 aa13.71□□□□□ -0.21
CDH13-204ENST00000539548 SNAPC4Q5SXM2 1469 aa13.68□□□□□ -0.22
CDH13-204ENST00000539548 CCDC18Q5T9S5 1454 aa13.67□□□□□ -0.22
CDH13-204ENST00000539548 HFM1A2PYH4 1435 aa13.66□□□□□ -0.22
CDH13-204ENST00000539548 UACAQ9BZF9 1416 aa13.66□□□□□ -0.22
CDH13-204ENST00000539548 ANP32CO43423 234 aa13.66□□□□□ -0.22
CDH13-204ENST00000539548 PTPN23Q9H3S7 1636 aa13.65□□□□□ -0.22
CDH13-204ENST00000539548 TONSLQ96HA7 1378 aa13.65□□□□□ -0.22
CDH13-204ENST00000539548 SAMD9Q5K651 1589 aa13.65□□□□□ -0.22
CDH13-204ENST00000539548 FKBP8Q14318 412 aa13.65□□□□□ -0.22
CDH13-204ENST00000539548 MTUS2Q5JR59 1369 aa13.64□□□□□ -0.23
CDH13-204ENST00000539548 LRRIQ1Q96JM4 1722 aa13.64□□□□□ -0.23
CDH13-204ENST00000539548 PTPRKQ15262 1439 aa13.63□□□□□ -0.23
CDH13-204ENST00000539548 HIRIP3Q9BW71 556 aaPredicted RBP13.63□□□□□ -0.23
CDH13-204ENST00000539548 THOC2Q8NI27 1593 aaKnown RBP13.62□□□□□ -0.23
CDH13-204ENST00000539548 NAIPQ13075 1403 aa13.61□□□□□ -0.23
CDH13-204ENST00000539548 MYOM3Q5VTT5 1437 aa13.61□□□□□ -0.23
CDH13-204ENST00000539548 GRIN2BQ13224 1484 aa13.61□□□□□ -0.23
CDH13-204ENST00000539548 NCOA2Q15596 1464 aa13.61□□□□□ -0.23
CDH13-204ENST00000539548 SUPT6HQ7KZ85 1726 aaKnown RBP13.6□□□□□ -0.23
CDH13-204ENST00000539548 NESP48681 1621 aa13.6□□□□□ -0.23
CDH13-204ENST00000539548 ABCA5Q8WWZ7 1642 aa13.6□□□□□ -0.23
CDH13-204ENST00000539548 NEFLP07196 543 aa13.59□□□□□ -0.23
CDH13-204ENST00000539548 BCANQ96GW7 911 aa13.59□□□□□ -0.23
CDH13-204ENST00000539548 EHBP1L1Q8N3D4 1523 aa13.58□□□□□ -0.24
CDH13-204ENST00000539548 URB2Q14146 1524 aaKnown RBP13.57□□□□□ -0.24
CDH13-204ENST00000539548 KDM5BQ9UGL1 1544 aa13.57□□□□□ -0.24
CDH13-204ENST00000539548 KIF21AQ7Z4S6 1674 aa13.57□□□□□ -0.24
CDH13-204ENST00000539548 ANP32EQ9BTT0 268 aa13.56□□□□□ -0.24
CDH13-204ENST00000539548 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
CDH13-204ENST00000539548 TRIM52Q96A61 297 aa13.56□□□□□ -0.24
CDH13-204ENST00000539548 ARHGEF11O15085 1522 aa13.56□□□□□ -0.24
CDH13-204ENST00000539548 UGGT2Q9NYU1 1516 aa13.55□□□□□ -0.24
CDH13-204ENST00000539548 GAPVD1Q14C86 1478 aa13.54□□□□□ -0.24
CDH13-204ENST00000539548 TDRD9Q8NDG6 1382 aaKnown RBP13.53□□□□□ -0.24
CDH13-204ENST00000539548 GCC2Q8IWJ2 1684 aa13.52□□□□□ -0.24
CDH13-204ENST00000539548 TCOF1Q13428 1488 aaKnown RBP13.52□□□□□ -0.24
CDH13-204ENST00000539548 HECW1Q76N89 1606 aa13.5□□□□□ -0.25
CDH13-204ENST00000539548 AKNAQ7Z591 1439 aa13.5□□□□□ -0.25
CDH13-204ENST00000539548 MAGI3Q5TCQ9 1506 aa13.5□□□□□ -0.25
CDH13-204ENST00000539548 RBM19Q9Y4C8 960 aaKnown RBP13.48□□□□□ -0.25
CDH13-204ENST00000539548 DENND4BO75064 1496 aaPredicted RBP13.47□□□□□ -0.25
CDH13-204ENST00000539548 HSPA5P11021 654 aaKnown RBP13.46□□□□□ -0.25
CDH13-204ENST00000539548 WASHC2AQ641Q2 1341 aa13.45□□□□□ -0.26
CDH13-204ENST00000539548 RRP7BPQ9NSQ0 103 aa13.45□□□□□ -0.26
CDH13-204ENST00000539548 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
CDH13-204ENST00000539548 MIA2Q96PC5 1412 aa13.45□□□□□ -0.26
CDH13-204ENST00000539548 TARBP1Q13395 1621 aaKnown RBP13.44□□□□□ -0.26
CDH13-204ENST00000539548 KDM6BO15054 1643 aa13.43□□□□□ -0.26
CDH13-204ENST00000539548 EIF4G2P78344 907 aaKnown RBP eCLIP13.43□□□□□ -0.26
CDH13-204ENST00000539548 HNRNPUQ00839 825 aaKnown RBP eCLIP13.43□□□□□ -0.26
CDH13-204ENST00000539548 EPRSP07814 1512 aaKnown RBP13.43□□□□□ -0.26
CDH13-204ENST00000539548 CHIC2Q9UKJ5 165 aa13.42□□□□□ -0.26
CDH13-204ENST00000539548 MPHOSPH9Q99550 1183 aa13.42□□□□□ -0.26
CDH13-204ENST00000539548 IQGAP2Q13576 1575 aa13.4□□□□□ -0.26
CDH13-204ENST00000539548 CNTLNQ9NXG0 1405 aa13.4□□□□□ -0.26
CDH13-204ENST00000539548 ERICH6BQ5W0A0 696 aa13.4□□□□□ -0.26
CDH13-204ENST00000539548 PBRM1Q86U86 1689 aa13.4□□□□□ -0.26
CDH13-204ENST00000539548 L3MBTL2Q969R5 705 aa13.38□□□□□ -0.27
CDH13-204ENST00000539548 WDR62O43379 1518 aa13.38□□□□□ -0.27
CDH13-204ENST00000539548 NCOA1Q15788 1441 aa13.37□□□□□ -0.27
CDH13-204ENST00000539548 ROCK1Q13464 1354 aa13.37□□□□□ -0.27
CDH13-204ENST00000539548 CDK13Q14004 1512 aaKnown RBP13.37□□□□□ -0.27
CDH13-204ENST00000539548 CCDC7Q96M83 1385 aa13.36□□□□□ -0.27
CDH13-204ENST00000539548 ADAMTS12P58397 1594 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms