RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 NISCHQ9Y2I1 1504 aa19.65■□□□□ 0.74
CDH13-204ENST00000539548 SHROOM4Q9ULL8 1493 aa16.75■□□□□ 0.27
CDH13-204ENST00000539548 CCDC180Q9P1Z9 1646 aa16.68■□□□□ 0.26
CDH13-204ENST00000539548 ZCCHC6Q5VYS8 1495 aaKnown RBP16.65■□□□□ 0.26
CDH13-204ENST00000539548 SUPT5HO00267 1087 aaKnown RBP16.53■□□□□ 0.24
CDH13-204ENST00000539548 CHIC1Q5VXU3 224 aa16.23■□□□□ 0.19
CDH13-204ENST00000539548 DCAF1Q9Y4B6 1507 aa16.18■□□□□ 0.18
CDH13-204ENST00000539548 MYO15BQ96JP2 1530 aa16.17■□□□□ 0.18
CDH13-204ENST00000539548 DCAF8L2P0C7V8 631 aa16.11■□□□□ 0.17
CDH13-204ENST00000539548 HRCP23327 699 aa16.03■□□□□ 0.16
CDH13-204ENST00000539548 ABCC9O60706 1549 aa15.89■□□□□ 0.13
CDH13-204ENST00000539548 PCGF6Q9BYE7 350 aa15.85■□□□□ 0.13
CDH13-204ENST00000539548 LOC105371045A0A1W2PR82 267 aa15.7■□□□□ 0.1
CDH13-204ENST00000539548 RSF1Q96T23 1441 aaPredicted RBP15.6■□□□□ 0.09
CDH13-204ENST00000539548 TRIM26Q12899 539 aaPredicted RBP15.58■□□□□ 0.08
CDH13-204ENST00000539548 PPARGC1BQ86YN6 1023 aaKnown RBP15.58■□□□□ 0.08
CDH13-204ENST00000539548 SCRIBQ14160 1630 aa15.56■□□□□ 0.08
CDH13-204ENST00000539548 RB1CC1Q8TDY2 1594 aa15.48■□□□□ 0.07
CDH13-204ENST00000539548 TRIM41Q8WV44 630 aa15.43■□□□□ 0.06
CDH13-204ENST00000539548 NACADO15069 1562 aa15.36■□□□□ 0.05
CDH13-204ENST00000539548 ZEB1P37275 1124 aaPredicted RBP15.36■□□□□ 0.05
CDH13-204ENST00000539548 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.04
CDH13-204ENST00000539548 MROH2BQ7Z745 1585 aa15.26■□□□□ 0.03
CDH13-204ENST00000539548 FAM9AQ8IZU1 332 aaPredicted RBP15.24■□□□□ 0.03
CDH13-204ENST00000539548 WIZO95785 1651 aa15.19■□□□□ 0.02
CDH13-204ENST00000539548 BAZ1AQ9NRL2 1556 aaPredicted RBP15.14■□□□□ 0.01
CDH13-204ENST00000539548 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
CDH13-204ENST00000539548 EIF4G1Q04637 1599 aaKnown RBP15.1■□□□□ 0.01
CDH13-204ENST00000539548 EHMT2Q96KQ7 1210 aa15.04■□□□□ -0
CDH13-204ENST00000539548 TOP2AP11388 1531 aaKnown RBP14.98□□□□□ -0.01
CDH13-204ENST00000539548 SMARCA4P51532 1647 aa14.93□□□□□ -0.02
CDH13-204ENST00000539548 CCDC88BA6NC98 1476 aa14.91□□□□□ -0.02
CDH13-204ENST00000539548 WRNQ14191 1432 aaPredicted RBP eCLIP14.9□□□□□ -0.02
CDH13-204ENST00000539548 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
CDH13-204ENST00000539548 ABCC8Q09428 1581 aa14.88□□□□□ -0.03
CDH13-204ENST00000539548 UNC13AQ9UPW8 1703 aa14.85□□□□□ -0.03
CDH13-204ENST00000539548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
CDH13-204ENST00000539548 CCER1Q8TC90 406 aaPredicted RBP14.85□□□□□ -0.03
CDH13-204ENST00000539548 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
CDH13-204ENST00000539548 PELP1Q8IZL8 1130 aaKnown RBP14.84□□□□□ -0.03
CDH13-204ENST00000539548 TNIKQ9UKE5 1360 aa14.82□□□□□ -0.04
CDH13-204ENST00000539548 EEA1Q15075 1411 aa14.82□□□□□ -0.04
CDH13-204ENST00000539548 CEP162Q5TB80 1403 aa14.81□□□□□ -0.04
CDH13-204ENST00000539548 SOGA1O94964 1423 aa14.78□□□□□ -0.04
CDH13-204ENST00000539548 PABPN1Q86U42 306 aaKnown RBP eCLIP14.77□□□□□ -0.05
CDH13-204ENST00000539548 CSRNP3Q8WYN3 585 aa14.75□□□□□ -0.05
CDH13-204ENST00000539548 RUSC2Q8N2Y8 1516 aa14.7□□□□□ -0.06
CDH13-204ENST00000539548 GOLGA3Q08378 1498 aa14.68□□□□□ -0.06
CDH13-204ENST00000539548 ACIN1Q9UKV3 1341 aaKnown RBP14.68□□□□□ -0.06
CDH13-204ENST00000539548 PEG3Q9GZU2 1588 aa14.67□□□□□ -0.06
CDH13-204ENST00000539548 DIEXFQ68CQ4 756 aaKnown RBP14.67□□□□□ -0.06
CDH13-204ENST00000539548 UBTFP17480 764 aaKnown RBP14.66□□□□□ -0.06
CDH13-204ENST00000539548 BICRAQ9NZM4 1560 aa14.64□□□□□ -0.07
CDH13-204ENST00000539548 TTBK1Q5TCY1 1321 aaPredicted RBP14.62□□□□□ -0.07
CDH13-204ENST00000539548 NEUROD1Q13562 356 aa14.61□□□□□ -0.07
CDH13-204ENST00000539548 KIF21BO75037 1637 aa14.6□□□□□ -0.07
CDH13-204ENST00000539548 CEP164Q9UPV0 1460 aa14.59□□□□□ -0.07
CDH13-204ENST00000539548 CENPBP07199 599 aaPredicted RBP14.58□□□□□ -0.08
CDH13-204ENST00000539548 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
CDH13-204ENST00000539548 ZNF316A6NFI3 1004 aaPredicted RBP14.55□□□□□ -0.08
CDH13-204ENST00000539548 BAZ1BQ9UIG0 1483 aaKnown RBP14.51□□□□□ -0.09
CDH13-204ENST00000539548 CLIP1P30622 1438 aa14.5□□□□□ -0.09
CDH13-204ENST00000539548 ATAD2BQ9ULI0 1458 aa14.49□□□□□ -0.09
CDH13-204ENST00000539548 VPS8Q8N3P4 1428 aa14.48□□□□□ -0.09
CDH13-204ENST00000539548 GTF3C3Q9Y5Q9 886 aa14.48□□□□□ -0.09
CDH13-204ENST00000539548 HNRNPUL2Q1KMD3 747 aaKnown RBP14.42□□□□□ -0.1
CDH13-204ENST00000539548 RAPGEF2Q9Y4G8 1499 aa14.42□□□□□ -0.1
CDH13-204ENST00000539548 TOP2BQ02880 1626 aa14.41□□□□□ -0.1
CDH13-204ENST00000539548 APLP2Q06481 763 aa14.4□□□□□ -0.1
CDH13-204ENST00000539548 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
CDH13-204ENST00000539548 CC2D2AQ9P2K1 1620 aa14.35□□□□□ -0.11
CDH13-204ENST00000539548 ERICH3Q5RHP9 1530 aa14.34□□□□□ -0.11
CDH13-204ENST00000539548 MIER1Q8N108 512 aa14.32□□□□□ -0.12
CDH13-204ENST00000539548 CLSPNQ9HAW4 1339 aa14.31□□□□□ -0.12
CDH13-204ENST00000539548 PRXQ9BXM0 1461 aa14.3□□□□□ -0.12
CDH13-204ENST00000539548 ARAP1Q96P48 1450 aa14.25□□□□□ -0.13
CDH13-204ENST00000539548 YTHDC1Q96MU7 727 aaKnown RBP14.25□□□□□ -0.13
CDH13-204ENST00000539548 RANGAP1P46060 587 aaPredicted RBP14.23□□□□□ -0.13
CDH13-204ENST00000539548 DHX57Q6P158 1386 aaKnown RBP14.23□□□□□ -0.13
CDH13-204ENST00000539548 HMGXB3Q12766 1538 aa14.22□□□□□ -0.13
CDH13-204ENST00000539548 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
CDH13-204ENST00000539548 CUX1P39880 1505 aa14.2□□□□□ -0.14
CDH13-204ENST00000539548 RRBP1Q9P2E9 1410 aaKnown RBP14.19□□□□□ -0.14
CDH13-204ENST00000539548 KIF27Q86VH2 1401 aa14.18□□□□□ -0.14
CDH13-204ENST00000539548 KANK4Q5T7N3 995 aaPredicted RBP14.17□□□□□ -0.14
CDH13-204ENST00000539548 CUX2O14529 1486 aa14.16□□□□□ -0.14
CDH13-204ENST00000539548 MYT1Q01538 1121 aa14.15□□□□□ -0.14
CDH13-204ENST00000539548 CFTRP13569 1480 aa14.13□□□□□ -0.15
CDH13-204ENST00000539548 ARHGAP35Q9NRY4 1499 aa14.11□□□□□ -0.15
CDH13-204ENST00000539548 CCNB3Q8WWL7 1395 aa14.09□□□□□ -0.15
CDH13-204ENST00000539548 PRDM2Q13029 1718 aa14.08□□□□□ -0.16
CDH13-204ENST00000539548 MAP3K1Q13233 1512 aa14.06□□□□□ -0.16
CDH13-204ENST00000539548 DNAJC5Q9H3Z4 198 aa14.02□□□□□ -0.17
CDH13-204ENST00000539548 IGF1RP08069 1367 aa14.01□□□□□ -0.17
CDH13-204ENST00000539548 TIAM1Q13009 1591 aa14.01□□□□□ -0.17
CDH13-204ENST00000539548 RAB3GAP2Q9H2M9 1393 aa13.97□□□□□ -0.17
CDH13-204ENST00000539548 MAPKBP1O60336 1514 aa13.96□□□□□ -0.17
CDH13-204ENST00000539548 CARMIL1Q5VZK9 1371 aa13.95□□□□□ -0.18
CDH13-204ENST00000539548 LRRC9Q6ZRR7 1453 aa13.95□□□□□ -0.18
CDH13-204ENST00000539548 SETD5Q9C0A6 1442 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms