RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ZEB1P37275 1124 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-233ENST00000535896 MKRN4PQ13434 485 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-233ENST00000535896 LAMC3Q9Y6N6 1575 aa10.05□□□□□ -0.8
SYNE1-233ENST00000535896 CCDC88BA6NC98 1476 aa10.04□□□□□ -0.8
SYNE1-233ENST00000535896 ZNF692Q9BU19 519 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-233ENST00000535896 CADPSQ9ULU8 1353 aa10.03□□□□□ -0.8
SYNE1-233ENST00000535896 C19orf67A6NJJ6 358 aa10.02□□□□□ -0.8
SYNE1-233ENST00000535896 SSUH2Q9Y2M2 353 aa10.01□□□□□ -0.81
SYNE1-233ENST00000535896 CFTRP13569 1480 aa10□□□□□ -0.81
SYNE1-233ENST00000535896 LOC105371045A0A1W2PR82 267 aa10□□□□□ -0.81
SYNE1-233ENST00000535896 TRIM41Q8WV44 630 aa10□□□□□ -0.81
SYNE1-233ENST00000535896 NESP48681 1621 aa9.99□□□□□ -0.81
SYNE1-233ENST00000535896 PDS5BQ9NTI5 1447 aa9.97□□□□□ -0.81
SYNE1-233ENST00000535896 PRDM2Q13029 1718 aa9.95□□□□□ -0.82
SYNE1-233ENST00000535896 ERCC6Q03468 1493 aa9.94□□□□□ -0.82
SYNE1-233ENST00000535896 GABBR2O75899 941 aa9.92□□□□□ -0.82
SYNE1-233ENST00000535896 CHADLQ6NUI6 762 aa9.91□□□□□ -0.82
SYNE1-233ENST00000535896 FANCD2Q9BXW9 1451 aa9.91□□□□□ -0.82
SYNE1-233ENST00000535896 KIF21AQ7Z4S6 1674 aa9.9□□□□□ -0.82
SYNE1-233ENST00000535896 CEP164Q9UPV0 1460 aa9.9□□□□□ -0.82
SYNE1-233ENST00000535896 EEA1Q15075 1411 aa9.89□□□□□ -0.83
SYNE1-233ENST00000535896 PRR29P0C7W0 189 aa9.88□□□□□ -0.83
SYNE1-233ENST00000535896 WRNQ14191 1432 aaPredicted RBP eCLIP9.87□□□□□ -0.83
SYNE1-233ENST00000535896 LHX8Q68G74 356 aa9.87□□□□□ -0.83
SYNE1-233ENST00000535896 PPARGC1BQ86YN6 1023 aaKnown RBP9.87□□□□□ -0.83
SYNE1-233ENST00000535896 MRC2Q9UBG0 1479 aa9.86□□□□□ -0.83
SYNE1-233ENST00000535896 CSRNP3Q8WYN3 585 aa9.86□□□□□ -0.83
SYNE1-233ENST00000535896 THOC2Q8NI27 1593 aaKnown RBP9.86□□□□□ -0.83
SYNE1-233ENST00000535896 WDR62O43379 1518 aa9.83□□□□□ -0.84
SYNE1-233ENST00000535896 CLCN6P51797 869 aa9.82□□□□□ -0.84
SYNE1-233ENST00000535896 CUX2O14529 1486 aa9.82□□□□□ -0.84
SYNE1-233ENST00000535896 ABCC8Q09428 1581 aa9.81□□□□□ -0.84
SYNE1-233ENST00000535896 URB2Q14146 1524 aaKnown RBP9.78□□□□□ -0.84
SYNE1-233ENST00000535896 DNMBPQ6XZF7 1577 aa9.78□□□□□ -0.84
SYNE1-233ENST00000535896 TOPBP1Q92547 1522 aa9.76□□□□□ -0.85
SYNE1-233ENST00000535896 CD44P16070 742 aaKnown RBP9.75□□□□□ -0.85
SYNE1-233ENST00000535896 PELP1Q8IZL8 1130 aaKnown RBP9.75□□□□□ -0.85
SYNE1-233ENST00000535896 TNIKQ9UKE5 1360 aa9.75□□□□□ -0.85
SYNE1-233ENST00000535896 FARP1Q9Y4F1 1045 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-233ENST00000535896 KIF21BO75037 1637 aa9.74□□□□□ -0.85
SYNE1-233ENST00000535896 CUX1P39880 1505 aa9.72□□□□□ -0.85
SYNE1-233ENST00000535896 CEP162Q5TB80 1403 aa9.72□□□□□ -0.85
SYNE1-233ENST00000535896 GOLGA3Q08378 1498 aa9.71□□□□□ -0.85
SYNE1-233ENST00000535896 FAM9AQ8IZU1 332 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-233ENST00000535896 TOP2BQ02880 1626 aa9.7□□□□□ -0.86
SYNE1-233ENST00000535896 BIVM-ERCC5R4GMW8 1640 aa9.7□□□□□ -0.86
SYNE1-233ENST00000535896 POLA1P09884 1462 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-233ENST00000535896 IFT140Q96RY7 1462 aa9.69□□□□□ -0.86
SYNE1-233ENST00000535896 POTEIP0CG38 1075 aa9.69□□□□□ -0.86
SYNE1-233ENST00000535896 FGD5Q6ZNL6 1462 aa9.68□□□□□ -0.86
SYNE1-233ENST00000535896 SYNJ1O43426 1573 aa9.68□□□□□ -0.86
SYNE1-233ENST00000535896 WDR97A6NE52 1622 aa9.65□□□□□ -0.87
SYNE1-233ENST00000535896 TARBP1Q13395 1621 aaKnown RBP9.65□□□□□ -0.87
SYNE1-233ENST00000535896 SOGA1O94964 1423 aa9.64□□□□□ -0.87
SYNE1-233ENST00000535896 DCBLD2Q96PD2 775 aa9.63□□□□□ -0.87
SYNE1-233ENST00000535896 ABCA10Q8WWZ4 1543 aa9.61□□□□□ -0.87
SYNE1-233ENST00000535896 RAD54L2Q9Y4B4 1467 aa9.61□□□□□ -0.87
SYNE1-233ENST00000535896 ZNF579Q8NAF0 562 aaKnown RBP9.61□□□□□ -0.87
SYNE1-233ENST00000535896 STAG3Q9UJ98 1225 aa9.6□□□□□ -0.87
SYNE1-233ENST00000535896 ERICH3Q5RHP9 1530 aa9.59□□□□□ -0.87
SYNE1-233ENST00000535896 EIF4G3O43432 1585 aaKnown RBP9.59□□□□□ -0.87
SYNE1-233ENST00000535896 ZNF608Q9ULD9 1512 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-233ENST00000535896 CCER1Q8TC90 406 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-233ENST00000535896 ZRANB1Q9UGI0 708 aa9.58□□□□□ -0.88
SYNE1-233ENST00000535896 CREBZFQ9NS37 354 aa9.56□□□□□ -0.88
SYNE1-233ENST00000535896 ABCA5Q8WWZ7 1642 aa9.56□□□□□ -0.88
SYNE1-233ENST00000535896 VPS8Q8N3P4 1428 aa9.56□□□□□ -0.88
SYNE1-233ENST00000535896 AQRO60306 1485 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-233ENST00000535896 GAPVD1Q14C86 1478 aa9.55□□□□□ -0.88
SYNE1-233ENST00000535896 TDRD9Q8NDG6 1382 aaKnown RBP9.54□□□□□ -0.88
SYNE1-233ENST00000535896 GRIN2BQ13224 1484 aa9.54□□□□□ -0.88
SYNE1-233ENST00000535896 KIF27Q86VH2 1401 aa9.53□□□□□ -0.88
SYNE1-233ENST00000535896 RUSC2Q8N2Y8 1516 aa9.52□□□□□ -0.89
SYNE1-233ENST00000535896 CLIP1P30622 1438 aa9.52□□□□□ -0.89
SYNE1-233ENST00000535896 PBRM1Q86U86 1689 aa9.51□□□□□ -0.89
SYNE1-233ENST00000535896 MAGI1Q96QZ7 1491 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-233ENST00000535896 CENPBP07199 599 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-233ENST00000535896 GALR2O43603 387 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-233ENST00000535896 CLSPNQ9HAW4 1339 aa9.48□□□□□ -0.89
SYNE1-233ENST00000535896 ACIN1Q9UKV3 1341 aaKnown RBP9.48□□□□□ -0.89
SYNE1-233ENST00000535896 SNAPC4Q5SXM2 1469 aa9.48□□□□□ -0.89
SYNE1-233ENST00000535896 PAK3O75914 559 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-233ENST00000535896 DIEXFQ68CQ4 756 aaKnown RBP9.47□□□□□ -0.89
SYNE1-233ENST00000535896 SYNJ2O15056 1496 aa9.47□□□□□ -0.89
SYNE1-233ENST00000535896 ADAMTS12P58397 1594 aa9.47□□□□□ -0.89
SYNE1-233ENST00000535896 SPDYE4A6NLX3 237 aa9.46□□□□□ -0.9
SYNE1-233ENST00000535896 UBTFP17480 764 aaKnown RBP9.46□□□□□ -0.9
SYNE1-233ENST00000535896 CUL7Q14999 1698 aa9.46□□□□□ -0.9
SYNE1-233ENST00000535896 PRXQ9BXM0 1461 aa9.45□□□□□ -0.9
SYNE1-233ENST00000535896 FHAD1B1AJZ9 1412 aa9.45□□□□□ -0.9
SYNE1-233ENST00000535896 RAPGEF2Q9Y4G8 1499 aa9.44□□□□□ -0.9
SYNE1-233ENST00000535896 IGF1RP08069 1367 aa9.43□□□□□ -0.9
SYNE1-233ENST00000535896 CHD1O14646 1710 aa9.43□□□□□ -0.9
SYNE1-233ENST00000535896 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
SYNE1-233ENST00000535896 PLSCR2Q9NRY7 297 aa9.43□□□□□ -0.9
SYNE1-233ENST00000535896 ZNF316A6NFI3 1004 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-233ENST00000535896 CHMP7Q8WUX9 453 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-233ENST00000535896 PHF12Q96QT6 1004 aa9.41□□□□□ -0.9
SYNE1-233ENST00000535896 GRIN2AQ12879 1464 aa9.41□□□□□ -0.9
SYNE1-233ENST00000535896 OTUD5Q96G74 571 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms