RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 AEBP2Q6ZN18 517 aaPredicted RBP19.07■□□□□ 0.64
SYNE1-233ENST00000535896 CHIC1Q5VXU3 224 aa17.91■□□□□ 0.46
SYNE1-233ENST00000535896 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
SYNE1-233ENST00000535896 PHF23Q9BUL5 403 aaPredicted RBP16.1■□□□□ 0.17
SYNE1-233ENST00000535896 FOXD1Q16676 465 aa15.25■□□□□ 0.03
SYNE1-233ENST00000535896 POTEDQ86YR6 584 aa14.55□□□□□ -0.08
SYNE1-233ENST00000535896 MSH5O43196 834 aa14.47□□□□□ -0.09
SYNE1-233ENST00000535896 PIAS4Q8N2W9 510 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-233ENST00000535896 PLPPR3Q6T4P5 718 aa14.18□□□□□ -0.14
SYNE1-233ENST00000535896 PPP6R1Q9UPN7 881 aa14.05□□□□□ -0.16
SYNE1-233ENST00000535896 ADRA2BP18089 450 aa13.99□□□□□ -0.17
SYNE1-233ENST00000535896 NISCHQ9Y2I1 1504 aa13.48□□□□□ -0.25
SYNE1-233ENST00000535896 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
SYNE1-233ENST00000535896 MAPK8IP2Q13387 824 aaPredicted RBP12.94□□□□□ -0.34
SYNE1-233ENST00000535896 SCAF1Q9H7N4 1312 aaKnown RBP12.9□□□□□ -0.34
SYNE1-233ENST00000535896 CACNB1Q02641 598 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-233ENST00000535896 DCAF8L1A6NGE4 600 aa12.42□□□□□ -0.42
SYNE1-233ENST00000535896 PPP4R3CPQ6ZMV5 832 aa12.39□□□□□ -0.43
SYNE1-233ENST00000535896 HOXD11P31277 338 aaPredicted RBP12.35□□□□□ -0.43
SYNE1-233ENST00000535896 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
SYNE1-233ENST00000535896 CNKSR2Q8WXI2 1034 aa12.22□□□□□ -0.45
SYNE1-233ENST00000535896 RNF216Q9NWF9 866 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-233ENST00000535896 C1QBPQ07021 282 aaKnown RBP12.14□□□□□ -0.47
SYNE1-233ENST00000535896 DNAJC5BQ9UF47 199 aa12.08□□□□□ -0.48
SYNE1-233ENST00000535896 CCDC180Q9P1Z9 1646 aa11.97□□□□□ -0.49
SYNE1-233ENST00000535896 NCBP3Q53F19 620 aaKnown RBP11.85□□□□□ -0.51
SYNE1-233ENST00000535896 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.77□□□□□ -0.53
SYNE1-233ENST00000535896 NPM3O75607 178 aaKnown RBP11.66□□□□□ -0.54
SYNE1-233ENST00000535896 ABCC9O60706 1549 aa11.51□□□□□ -0.57
SYNE1-233ENST00000535896 U3KPZ7 1027 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-233ENST00000535896 CAPN15O75808 1086 aa11.4□□□□□ -0.59
SYNE1-233ENST00000535896 DSG3P32926 999 aa11.39□□□□□ -0.59
SYNE1-233ENST00000535896 SPINK5Q9NQ38 1064 aaPredicted RBP11.39□□□□□ -0.59
SYNE1-233ENST00000535896 POTEHQ6S545 545 aa11.36□□□□□ -0.59
SYNE1-233ENST00000535896 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.61
SYNE1-233ENST00000535896 APLP2Q06481 763 aa11.23□□□□□ -0.61
SYNE1-233ENST00000535896 MYO15BQ96JP2 1530 aa11.22□□□□□ -0.61
SYNE1-233ENST00000535896 NACADO15069 1562 aa11.21□□□□□ -0.61
SYNE1-233ENST00000535896 DCAF1Q9Y4B6 1507 aa11.21□□□□□ -0.61
SYNE1-233ENST00000535896 SLC4A2P04920 1241 aa11.19□□□□□ -0.62
SYNE1-233ENST00000535896 KCNA4P22459 653 aa11.19□□□□□ -0.62
SYNE1-233ENST00000535896 RB1CC1Q8TDY2 1594 aa11.18□□□□□ -0.62
SYNE1-233ENST00000535896 TRHP20396 242 aaPredicted RBP11.15□□□□□ -0.63
SYNE1-233ENST00000535896 ZNF219Q9P2Y4 722 aaPredicted RBP11.15□□□□□ -0.63
SYNE1-233ENST00000535896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.14□□□□□ -0.63
SYNE1-233ENST00000535896 DCAF8L2P0C7V8 631 aa11.14□□□□□ -0.63
SYNE1-233ENST00000535896 HNRNPUL2Q1KMD3 747 aaKnown RBP11.14□□□□□ -0.63
SYNE1-233ENST00000535896 ABCB7O75027 752 aa11.1□□□□□ -0.63
SYNE1-233ENST00000535896 SAMD1Q6SPF0 538 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-233ENST00000535896 RBM42Q9BTD8 480 aaKnown RBP10.95□□□□□ -0.66
SYNE1-233ENST00000535896 UNC13AQ9UPW8 1703 aa10.9□□□□□ -0.66
SYNE1-233ENST00000535896 SCRIBQ14160 1630 aa10.87□□□□□ -0.67
SYNE1-233ENST00000535896 BICRAQ9NZM4 1560 aa10.81□□□□□ -0.68
SYNE1-233ENST00000535896 SHROOM4Q9ULL8 1493 aa10.8□□□□□ -0.68
SYNE1-233ENST00000535896 MYCNP04198 464 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-233ENST00000535896 POLA2Q14181 598 aa10.78□□□□□ -0.68
SYNE1-233ENST00000535896 CHRDL2Q6WN34 429 aa10.77□□□□□ -0.69
SYNE1-233ENST00000535896 PABPN1Q86U42 306 aaKnown RBP eCLIP10.75□□□□□ -0.69
SYNE1-233ENST00000535896 AKT1S1Q96B36 256 aa10.61□□□□□ -0.71
SYNE1-233ENST00000535896 ZBTB12Q9Y330 459 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-233ENST00000535896 SUPT5HO00267 1087 aaKnown RBP10.59□□□□□ -0.71
SYNE1-233ENST00000535896 ATF5Q9Y2D1 282 aaPredicted RBP10.55□□□□□ -0.72
SYNE1-233ENST00000535896 FOXD4L1Q9NU39 408 aa10.53□□□□□ -0.72
SYNE1-233ENST00000535896 EIF4G1Q04637 1599 aaKnown RBP10.53□□□□□ -0.72
SYNE1-233ENST00000535896 SP7Q8TDD2 431 aaPredicted RBP10.52□□□□□ -0.72
SYNE1-233ENST00000535896 SLC4A1APQ9BWU0 796 aaKnown RBP10.52□□□□□ -0.72
SYNE1-233ENST00000535896 REM2Q8IYK8 340 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-233ENST00000535896 BAZ1AQ9NRL2 1556 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-233ENST00000535896 CECR2Q9BXF3 1484 aa10.44□□□□□ -0.74
SYNE1-233ENST00000535896 OSCARQ8IYS5 282 aa10.44□□□□□ -0.74
SYNE1-233ENST00000535896 SMARCA4P51532 1647 aa10.44□□□□□ -0.74
SYNE1-233ENST00000535896 CC2D2AQ9P2K1 1620 aa10.44□□□□□ -0.74
SYNE1-233ENST00000535896 PIP4P2Q8N4L2 257 aa10.41□□□□□ -0.74
SYNE1-233ENST00000535896 HRCP23327 699 aa10.38□□□□□ -0.75
SYNE1-233ENST00000535896 SMARCA2P51531 1590 aa10.37□□□□□ -0.75
SYNE1-233ENST00000535896 PEG3Q9GZU2 1588 aa10.37□□□□□ -0.75
SYNE1-233ENST00000535896 MROH2BQ7Z745 1585 aa10.36□□□□□ -0.75
SYNE1-233ENST00000535896 PITPNM1O00562 1244 aa10.35□□□□□ -0.75
SYNE1-233ENST00000535896 FXR2P51116 673 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-233ENST00000535896 ATAD2BQ9ULI0 1458 aa10.34□□□□□ -0.75
SYNE1-233ENST00000535896 NCAPD3P42695 1498 aa10.33□□□□□ -0.76
SYNE1-233ENST00000535896 HAX1O00165 279 aa10.33□□□□□ -0.76
SYNE1-233ENST00000535896 HMGXB3Q12766 1538 aa10.31□□□□□ -0.76
SYNE1-233ENST00000535896 RSF1Q96T23 1441 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-233ENST00000535896 BAZ1BQ9UIG0 1483 aaKnown RBP10.28□□□□□ -0.76
SYNE1-233ENST00000535896 ZBTB22O15209 634 aa10.27□□□□□ -0.76
SYNE1-233ENST00000535896 ATXN8OSP0DMR3 200 aa10.26□□□□□ -0.77
SYNE1-233ENST00000535896 WIZO95785 1651 aa10.26□□□□□ -0.77
SYNE1-233ENST00000535896 SPDYE2BA6NHP3 402 aa10.22□□□□□ -0.77
SYNE1-233ENST00000535896 SPDYE6P0CI01 402 aa10.22□□□□□ -0.77
SYNE1-233ENST00000535896 SPDYE2Q495Y8 402 aa10.22□□□□□ -0.77
SYNE1-233ENST00000535896 TOP2AP11388 1531 aaKnown RBP10.2□□□□□ -0.78
SYNE1-233ENST00000535896 FBLN2P98095 1184 aa10.18□□□□□ -0.78
SYNE1-233ENST00000535896 EHMT2Q96KQ7 1210 aa10.15□□□□□ -0.78
SYNE1-233ENST00000535896 EVX2Q03828 476 aa10.14□□□□□ -0.79
SYNE1-233ENST00000535896 PCGF6Q9BYE7 350 aa10.14□□□□□ -0.79
SYNE1-233ENST00000535896 TRIM26Q12899 539 aaPredicted RBP10.12□□□□□ -0.79
SYNE1-233ENST00000535896 SPDYE1Q8NFV5 336 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-233ENST00000535896 PRKAR2AP13861 404 aaKnown RBP10.09□□□□□ -0.79
SYNE1-233ENST00000535896 CLEC11AQ9Y240 323 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms