RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 CYB5RLQ6IPT4 315 aa13.18□□□□□ -0.3
CLDN1-202ENST00000490800 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
CLDN1-202ENST00000490800 ARHGEF11O15085 1522 aa13.17□□□□□ -0.3
CLDN1-202ENST00000490800 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.16□□□□□ -0.3
CLDN1-202ENST00000490800 HNRNPUL2Q1KMD3 747 aaKnown RBP13.16□□□□□ -0.3
CLDN1-202ENST00000490800 SAMD1Q6SPF0 538 aaPredicted RBP13.15□□□□□ -0.3
CLDN1-202ENST00000490800 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
CLDN1-202ENST00000490800 CHD1O14646 1710 aa13.13□□□□□ -0.31
CLDN1-202ENST00000490800 GRIN2BQ13224 1484 aa13.12□□□□□ -0.31
CLDN1-202ENST00000490800 GAPVD1Q14C86 1478 aa13.1□□□□□ -0.31
CLDN1-202ENST00000490800 WDR97A6NE52 1622 aa13.1□□□□□ -0.31
CLDN1-202ENST00000490800 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
CLDN1-202ENST00000490800 MAGI1Q96QZ7 1491 aaPredicted RBP13.09□□□□□ -0.31
CLDN1-202ENST00000490800 ABCA10Q8WWZ4 1543 aa13.08□□□□□ -0.32
CLDN1-202ENST00000490800 WRNQ14191 1432 aaPredicted RBP eCLIP13.06□□□□□ -0.32
CLDN1-202ENST00000490800 SYNJ2O15056 1496 aa13.06□□□□□ -0.32
CLDN1-202ENST00000490800 ARAP1Q96P48 1450 aa13.04□□□□□ -0.32
CLDN1-202ENST00000490800 CACNB1Q02641 598 aaPredicted RBP13.02□□□□□ -0.33
CLDN1-202ENST00000490800 CLASP1Q7Z460 1538 aa13.02□□□□□ -0.33
CLDN1-202ENST00000490800 SYNJ1O43426 1573 aa13.02□□□□□ -0.33
CLDN1-202ENST00000490800 TRHP20396 242 aaPredicted RBP13.01□□□□□ -0.33
CLDN1-202ENST00000490800 TOP2BQ02880 1626 aa13□□□□□ -0.33
CLDN1-202ENST00000490800 ABCA5Q8WWZ7 1642 aa13□□□□□ -0.33
CLDN1-202ENST00000490800 PBRM1Q86U86 1689 aa12.99□□□□□ -0.33
CLDN1-202ENST00000490800 BIVM-ERCC5R4GMW8 1640 aa12.98□□□□□ -0.33
CLDN1-202ENST00000490800 APLP2Q06481 763 aa12.95□□□□□ -0.34
CLDN1-202ENST00000490800 GRIN2AQ12879 1464 aa12.95□□□□□ -0.34
CLDN1-202ENST00000490800 FHAD1B1AJZ9 1412 aa12.94□□□□□ -0.34
CLDN1-202ENST00000490800 NUP160Q12769 1436 aa12.9□□□□□ -0.34
CLDN1-202ENST00000490800 ADAMTS12P58397 1594 aa12.9□□□□□ -0.35
CLDN1-202ENST00000490800 ERICH3Q5RHP9 1530 aa12.89□□□□□ -0.35
CLDN1-202ENST00000490800 RNF39Q9H2S5 420 aa12.88□□□□□ -0.35
CLDN1-202ENST00000490800 CEP170Q5SW79 1584 aa12.88□□□□□ -0.35
CLDN1-202ENST00000490800 ERCC6L2Q5T890 1561 aa12.86□□□□□ -0.35
CLDN1-202ENST00000490800 JPH4Q96JJ6 628 aa12.86□□□□□ -0.35
CLDN1-202ENST00000490800 IGF1RP08069 1367 aa12.84□□□□□ -0.35
CLDN1-202ENST00000490800 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
CLDN1-202ENST00000490800 FKBP8Q14318 412 aa12.82□□□□□ -0.36
CLDN1-202ENST00000490800 KIF27Q86VH2 1401 aa12.81□□□□□ -0.36
CLDN1-202ENST00000490800 PRG4Q92954 1404 aaPredicted RBP12.81□□□□□ -0.36
CLDN1-202ENST00000490800 SPINK5Q9NQ38 1064 aaPredicted RBP12.79□□□□□ -0.36
CLDN1-202ENST00000490800 SHROOM2Q13796 1616 aa12.78□□□□□ -0.36
CLDN1-202ENST00000490800 CARMIL1Q5VZK9 1371 aa12.75□□□□□ -0.37
CLDN1-202ENST00000490800 CAPN15O75808 1086 aa12.74□□□□□ -0.37
CLDN1-202ENST00000490800 C1QBPQ07021 282 aaKnown RBP12.73□□□□□ -0.37
CLDN1-202ENST00000490800 KIAA0586Q9BVV6 1533 aa12.72□□□□□ -0.37
CLDN1-202ENST00000490800 NPM1P06748 294 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLDN1-202ENST00000490800 RUSC2Q8N2Y8 1516 aa12.71□□□□□ -0.38
CLDN1-202ENST00000490800 TTBK1Q5TCY1 1321 aaPredicted RBP12.69□□□□□ -0.38
CLDN1-202ENST00000490800 CUL7Q14999 1698 aa12.68□□□□□ -0.38
CLDN1-202ENST00000490800 FAM69CQ0P6D2 419 aa12.66□□□□□ -0.38
CLDN1-202ENST00000490800 PTPRGP23470 1445 aa12.63□□□□□ -0.39
CLDN1-202ENST00000490800 POLA2Q14181 598 aa12.61□□□□□ -0.39
CLDN1-202ENST00000490800 CARMIL2Q6F5E8 1435 aa12.61□□□□□ -0.39
CLDN1-202ENST00000490800 RAPGEF2Q9Y4G8 1499 aa12.6□□□□□ -0.39
CLDN1-202ENST00000490800 TNIKQ9UKE5 1360 aa12.6□□□□□ -0.39
CLDN1-202ENST00000490800 ABCC10Q5T3U5 1492 aa12.59□□□□□ -0.39
CLDN1-202ENST00000490800 ADCY10Q96PN6 1610 aa12.59□□□□□ -0.39
CLDN1-202ENST00000490800 IQGAP2Q13576 1575 aa12.56□□□□□ -0.4
CLDN1-202ENST00000490800 MAPKBP1O60336 1514 aa12.56□□□□□ -0.4
CLDN1-202ENST00000490800 KIF13AQ9H1H9 1805 aa12.55□□□□□ -0.4
CLDN1-202ENST00000490800 ABCB7O75027 752 aa12.55□□□□□ -0.4
CLDN1-202ENST00000490800 DISP1Q96F81 1524 aa12.54□□□□□ -0.4
CLDN1-202ENST00000490800 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
CLDN1-202ENST00000490800 UACAQ9BZF9 1416 aa12.52□□□□□ -0.41
CLDN1-202ENST00000490800 ABCC2Q92887 1545 aa12.51□□□□□ -0.41
CLDN1-202ENST00000490800 DIP2BQ9P265 1576 aa12.51□□□□□ -0.41
CLDN1-202ENST00000490800 UGGT2Q9NYU1 1516 aa12.5□□□□□ -0.41
CLDN1-202ENST00000490800 UHRF1BP1LA0JNW5 1464 aa12.48□□□□□ -0.41
CLDN1-202ENST00000490800 PRXQ9BXM0 1461 aa12.48□□□□□ -0.41
CLDN1-202ENST00000490800 ASXL2Q76L83 1435 aa12.48□□□□□ -0.41
CLDN1-202ENST00000490800 PLB1Q6P1J6 1458 aa12.46□□□□□ -0.41
CLDN1-202ENST00000490800 P3H3Q8IVL6 736 aa12.45□□□□□ -0.42
CLDN1-202ENST00000490800 KIAA0556O60303 1618 aa12.44□□□□□ -0.42
CLDN1-202ENST00000490800 KDM5BQ9UGL1 1544 aa12.44□□□□□ -0.42
CLDN1-202ENST00000490800 SPDYE4A6NLX3 237 aa12.44□□□□□ -0.42
CLDN1-202ENST00000490800 TSPOAP1O95153 1857 aa12.42□□□□□ -0.42
CLDN1-202ENST00000490800 GOLGA3Q08378 1498 aa12.42□□□□□ -0.42
CLDN1-202ENST00000490800 FAM9AQ8IZU1 332 aaPredicted RBP12.42□□□□□ -0.42
CLDN1-202ENST00000490800 ZBTB12Q9Y330 459 aaPredicted RBP12.41□□□□□ -0.42
CLDN1-202ENST00000490800 KCNH8Q96L42 1107 aa12.4□□□□□ -0.42
CLDN1-202ENST00000490800 EPRSP07814 1512 aaKnown RBP12.4□□□□□ -0.42
CLDN1-202ENST00000490800 GLI2P10070 1586 aa12.39□□□□□ -0.43
CLDN1-202ENST00000490800 CTTNBP2Q8WZ74 1663 aa12.39□□□□□ -0.43
CLDN1-202ENST00000490800 KDM6BO15054 1643 aa12.39□□□□□ -0.43
CLDN1-202ENST00000490800 ARID3CA6NKF2 412 aa12.38□□□□□ -0.43
CLDN1-202ENST00000490800 DSG3P32926 999 aa12.38□□□□□ -0.43
CLDN1-202ENST00000490800 RANGAP1P46060 587 aaPredicted RBP12.38□□□□□ -0.43
CLDN1-202ENST00000490800 ZCCHC11Q5TAX3 1644 aaKnown RBP12.37□□□□□ -0.43
CLDN1-202ENST00000490800 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
CLDN1-202ENST00000490800 ABCA8O94911 1581 aa12.35□□□□□ -0.43
CLDN1-202ENST00000490800 COL17A1Q9UMD9 1497 aaPredicted RBP12.34□□□□□ -0.43
CLDN1-202ENST00000490800 WDR7Q9Y4E6 1490 aa12.34□□□□□ -0.43
CLDN1-202ENST00000490800 EEA1Q15075 1411 aa12.34□□□□□ -0.43
CLDN1-202ENST00000490800 PPRC1Q5VV67 1664 aaKnown RBP12.33□□□□□ -0.44
CLDN1-202ENST00000490800 CD109Q6YHK3 1445 aa12.31□□□□□ -0.44
CLDN1-202ENST00000490800 MAP3K4Q9Y6R4 1608 aa12.3□□□□□ -0.44
CLDN1-202ENST00000490800 ATP10BO94823 1461 aa12.3□□□□□ -0.44
CLDN1-202ENST00000490800 TEX14Q8IWB6 1497 aa12.3□□□□□ -0.44
CLDN1-202ENST00000490800 RTN4Q9NQC3 1192 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms