RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 AEBP2Q6ZN18 517 aaPredicted RBP20.97■□□□□ 0.95
CLDN1-202ENST00000490800 CHIC1Q5VXU3 224 aa20.8■□□□□ 0.92
CLDN1-202ENST00000490800 PHF23Q9BUL5 403 aaPredicted RBP18.34■□□□□ 0.53
CLDN1-202ENST00000490800 NISCHQ9Y2I1 1504 aa18.28■□□□□ 0.52
CLDN1-202ENST00000490800 SENP3Q9H4L4 574 aaPredicted RBP17.74■□□□□ 0.43
CLDN1-202ENST00000490800 PLPPR3Q6T4P5 718 aa17.06■□□□□ 0.32
CLDN1-202ENST00000490800 FOXD1Q16676 465 aa16.42■□□□□ 0.22
CLDN1-202ENST00000490800 ABCC9O60706 1549 aa16.34■□□□□ 0.21
CLDN1-202ENST00000490800 CCDC180Q9P1Z9 1646 aa16.27■□□□□ 0.19
CLDN1-202ENST00000490800 ADRA2BP18089 450 aa16.12■□□□□ 0.17
CLDN1-202ENST00000490800 PPP6R1Q9UPN7 881 aa16.08■□□□□ 0.16
CLDN1-202ENST00000490800 PIAS4Q8N2W9 510 aaPredicted RBP15.62■□□□□ 0.09
CLDN1-202ENST00000490800 DCAF8L2P0C7V8 631 aa15.56■□□□□ 0.08
CLDN1-202ENST00000490800 RB1CC1Q8TDY2 1594 aa15.51■□□□□ 0.07
CLDN1-202ENST00000490800 NACADO15069 1562 aa15.42■□□□□ 0.06
CLDN1-202ENST00000490800 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
CLDN1-202ENST00000490800 PABPN1Q86U42 306 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLDN1-202ENST00000490800 MYO15BQ96JP2 1530 aa15.22■□□□□ 0.03
CLDN1-202ENST00000490800 KCNA4P22459 653 aa15.17■□□□□ 0.02
CLDN1-202ENST00000490800 ZCCHC6Q5VYS8 1495 aaKnown RBP15.13■□□□□ 0.01
CLDN1-202ENST00000490800 UNC13AQ9UPW8 1703 aa15.1■□□□□ 0.01
CLDN1-202ENST00000490800 PPP4R3CPQ6ZMV5 832 aa15.09■□□□□ 0.01
CLDN1-202ENST00000490800 BICRAQ9NZM4 1560 aa15.07■□□□□ 0
CLDN1-202ENST00000490800 DCAF1Q9Y4B6 1507 aa15.06■□□□□ 0
CLDN1-202ENST00000490800 POTEDQ86YR6 584 aa15.02■□□□□ -0
CLDN1-202ENST00000490800 MSH5O43196 834 aa14.99□□□□□ -0.01
CLDN1-202ENST00000490800 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
CLDN1-202ENST00000490800 SHROOM4Q9ULL8 1493 aa14.82□□□□□ -0.04
CLDN1-202ENST00000490800 NCBP3Q53F19 620 aaKnown RBP14.79□□□□□ -0.04
CLDN1-202ENST00000490800 CC2D2AQ9P2K1 1620 aa14.71□□□□□ -0.05
CLDN1-202ENST00000490800 CECR2Q9BXF3 1484 aa14.69□□□□□ -0.06
CLDN1-202ENST00000490800 SCAF1Q9H7N4 1312 aaKnown RBP14.69□□□□□ -0.06
CLDN1-202ENST00000490800 EIF4G1Q04637 1599 aaKnown RBP14.69□□□□□ -0.06
CLDN1-202ENST00000490800 NPM3O75607 178 aaKnown RBP14.58□□□□□ -0.08
CLDN1-202ENST00000490800 EHMT2Q96KQ7 1210 aa14.58□□□□□ -0.08
CLDN1-202ENST00000490800 CNKSR2Q8WXI2 1034 aa14.56□□□□□ -0.08
CLDN1-202ENST00000490800 SLC4A1APQ9BWU0 796 aaKnown RBP14.52□□□□□ -0.09
CLDN1-202ENST00000490800 MAPK8IP2Q13387 824 aaPredicted RBP14.51□□□□□ -0.09
CLDN1-202ENST00000490800 NCAPD3P42695 1498 aa14.29□□□□□ -0.12
CLDN1-202ENST00000490800 ATAD2BQ9ULI0 1458 aa14.25□□□□□ -0.13
CLDN1-202ENST00000490800 DMRT2Q9Y5R5 561 aa14.21□□□□□ -0.13
CLDN1-202ENST00000490800 SMARCA4P51532 1647 aa14.2□□□□□ -0.14
CLDN1-202ENST00000490800 RNF216Q9NWF9 866 aaPredicted RBP14.18□□□□□ -0.14
CLDN1-202ENST00000490800 SMARCA2P51531 1590 aa14.17□□□□□ -0.14
CLDN1-202ENST00000490800 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
CLDN1-202ENST00000490800 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
CLDN1-202ENST00000490800 HMGXB3Q12766 1538 aa14.12□□□□□ -0.15
CLDN1-202ENST00000490800 BAZ1BQ9UIG0 1483 aaKnown RBP14.11□□□□□ -0.15
CLDN1-202ENST00000490800 MROH2BQ7Z745 1585 aa14.09□□□□□ -0.15
CLDN1-202ENST00000490800 ERCC6Q03468 1493 aa14.08□□□□□ -0.16
CLDN1-202ENST00000490800 PEG3Q9GZU2 1588 aa14.05□□□□□ -0.16
CLDN1-202ENST00000490800 NESP48681 1621 aa14.05□□□□□ -0.16
CLDN1-202ENST00000490800 HOXD11P31277 338 aaPredicted RBP14.02□□□□□ -0.17
CLDN1-202ENST00000490800 DNAJC5Q9H3Z4 198 aa14.01□□□□□ -0.17
CLDN1-202ENST00000490800 CUX2O14529 1486 aa13.99□□□□□ -0.17
CLDN1-202ENST00000490800 ZBTB22O15209 634 aa13.96□□□□□ -0.17
CLDN1-202ENST00000490800 WIZO95785 1651 aa13.91□□□□□ -0.18
CLDN1-202ENST00000490800 LAMC3Q9Y6N6 1575 aa13.9□□□□□ -0.18
CLDN1-202ENST00000490800 CADPSQ9ULU8 1353 aa13.88□□□□□ -0.19
CLDN1-202ENST00000490800 PDS5BQ9NTI5 1447 aa13.88□□□□□ -0.19
CLDN1-202ENST00000490800 RSF1Q96T23 1441 aaPredicted RBP13.85□□□□□ -0.19
CLDN1-202ENST00000490800 FOXD4L1Q9NU39 408 aa13.84□□□□□ -0.19
CLDN1-202ENST00000490800 THOC2Q8NI27 1593 aaKnown RBP13.81□□□□□ -0.2
CLDN1-202ENST00000490800 KIF21AQ7Z4S6 1674 aa13.79□□□□□ -0.2
CLDN1-202ENST00000490800 TOP2AP11388 1531 aaKnown RBP13.72□□□□□ -0.21
CLDN1-202ENST00000490800 MRC2Q9UBG0 1479 aa13.72□□□□□ -0.21
CLDN1-202ENST00000490800 CFTRP13569 1480 aa13.7□□□□□ -0.22
CLDN1-202ENST00000490800 FANCD2Q9BXW9 1451 aa13.69□□□□□ -0.22
CLDN1-202ENST00000490800 DCAF8L1A6NGE4 600 aa13.69□□□□□ -0.22
CLDN1-202ENST00000490800 CEP164Q9UPV0 1460 aa13.67□□□□□ -0.22
CLDN1-202ENST00000490800 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
CLDN1-202ENST00000490800 WDR62O43379 1518 aa13.65□□□□□ -0.22
CLDN1-202ENST00000490800 CCDC88BA6NC98 1476 aa13.63□□□□□ -0.23
CLDN1-202ENST00000490800 URB2Q14146 1524 aaKnown RBP13.57□□□□□ -0.24
CLDN1-202ENST00000490800 OSCARQ8IYS5 282 aa13.48□□□□□ -0.25
CLDN1-202ENST00000490800 MYCNP04198 464 aaPredicted RBP13.47□□□□□ -0.25
CLDN1-202ENST00000490800 TRIM41Q8WV44 630 aa13.46□□□□□ -0.25
CLDN1-202ENST00000490800 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.45□□□□□ -0.26
CLDN1-202ENST00000490800 TOPBP1Q92547 1522 aa13.44□□□□□ -0.26
CLDN1-202ENST00000490800 PRDM2Q13029 1718 aa13.43□□□□□ -0.26
CLDN1-202ENST00000490800 IFT140Q96RY7 1462 aa13.42□□□□□ -0.26
CLDN1-202ENST00000490800 ZNF608Q9ULD9 1512 aaPredicted RBP13.41□□□□□ -0.26
CLDN1-202ENST00000490800 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
CLDN1-202ENST00000490800 SUPT5HO00267 1087 aaKnown RBP13.4□□□□□ -0.26
CLDN1-202ENST00000490800 DNMBPQ6XZF7 1577 aa13.36□□□□□ -0.27
CLDN1-202ENST00000490800 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLDN1-202ENST00000490800 POLA1P09884 1462 aaPredicted RBP13.3□□□□□ -0.28
CLDN1-202ENST00000490800 SOGA1O94964 1423 aa13.3□□□□□ -0.28
CLDN1-202ENST00000490800 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
CLDN1-202ENST00000490800 FBLN2P98095 1184 aa13.28□□□□□ -0.28
CLDN1-202ENST00000490800 TDRD9Q8NDG6 1382 aaKnown RBP13.28□□□□□ -0.28
CLDN1-202ENST00000490800 TARBP1Q13395 1621 aaKnown RBP13.28□□□□□ -0.28
CLDN1-202ENST00000490800 ATXN8OSP0DMR3 200 aa13.27□□□□□ -0.29
CLDN1-202ENST00000490800 EIF4G3O43432 1585 aaKnown RBP13.27□□□□□ -0.29
CLDN1-202ENST00000490800 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
CLDN1-202ENST00000490800 U3KPZ7 1027 aaPredicted RBP13.23□□□□□ -0.29
CLDN1-202ENST00000490800 CUX1P39880 1505 aa13.22□□□□□ -0.29
CLDN1-202ENST00000490800 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
CLDN1-202ENST00000490800 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
CLDN1-202ENST00000490800 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms