RNA–Protein interactions for RNA: ENST00000474006.1

CCDC93-207, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-207ENST00000474006 FAM9AQ8IZU1 332 aaPredicted RBP12.58□□□□□ -0.4
CCDC93-207ENST00000474006 IFT140Q96RY7 1462 aa12.58□□□□□ -0.4
CCDC93-207ENST00000474006 AQRO60306 1485 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC93-207ENST00000474006 ABCA10Q8WWZ4 1543 aa12.54□□□□□ -0.4
CCDC93-207ENST00000474006 RNF39Q9H2S5 420 aa12.53□□□□□ -0.4
CCDC93-207ENST00000474006 RUSC2Q8N2Y8 1516 aa12.52□□□□□ -0.4
CCDC93-207ENST00000474006 ZNF608Q9ULD9 1512 aaPredicted RBP12.52□□□□□ -0.4
CCDC93-207ENST00000474006 KIF27Q86VH2 1401 aa12.52□□□□□ -0.41
CCDC93-207ENST00000474006 TARBP1Q13395 1621 aaKnown RBP12.51□□□□□ -0.41
CCDC93-207ENST00000474006 IGF1RP08069 1367 aa12.5□□□□□ -0.41
CCDC93-207ENST00000474006 GAPVD1Q14C86 1478 aa12.48□□□□□ -0.41
CCDC93-207ENST00000474006 EEA1Q15075 1411 aa12.45□□□□□ -0.42
CCDC93-207ENST00000474006 GRIN2BQ13224 1484 aa12.43□□□□□ -0.42
CCDC93-207ENST00000474006 C1QBPQ07021 282 aaKnown RBP12.42□□□□□ -0.42
CCDC93-207ENST00000474006 CARMIL1Q5VZK9 1371 aa12.42□□□□□ -0.42
CCDC93-207ENST00000474006 SPINK5Q9NQ38 1064 aaPredicted RBP12.41□□□□□ -0.42
CCDC93-207ENST00000474006 FBLN2P98095 1184 aa12.4□□□□□ -0.42
CCDC93-207ENST00000474006 CHMP7Q8WUX9 453 aaPredicted RBP12.4□□□□□ -0.42
CCDC93-207ENST00000474006 LOC105371045A0A1W2PR82 267 aa12.39□□□□□ -0.43
CCDC93-207ENST00000474006 AMER1Q5JTC6 1135 aaPredicted RBP12.38□□□□□ -0.43
CCDC93-207ENST00000474006 WDR97A6NE52 1622 aa12.37□□□□□ -0.43
CCDC93-207ENST00000474006 ABCA5Q8WWZ7 1642 aa12.37□□□□□ -0.43
CCDC93-207ENST00000474006 TRHP20396 242 aaPredicted RBP12.37□□□□□ -0.43
CCDC93-207ENST00000474006 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
CCDC93-207ENST00000474006 EIF4G3O43432 1585 aaKnown RBP12.36□□□□□ -0.43
CCDC93-207ENST00000474006 SNAPC4Q5SXM2 1469 aa12.35□□□□□ -0.43
CCDC93-207ENST00000474006 FHAD1B1AJZ9 1412 aa12.35□□□□□ -0.43
CCDC93-207ENST00000474006 PRXQ9BXM0 1461 aa12.34□□□□□ -0.43
CCDC93-207ENST00000474006 CAPN15O75808 1086 aa12.33□□□□□ -0.44
CCDC93-207ENST00000474006 UBTFP17480 764 aaKnown RBP12.33□□□□□ -0.44
CCDC93-207ENST00000474006 MAGI1Q96QZ7 1491 aaPredicted RBP12.33□□□□□ -0.44
CCDC93-207ENST00000474006 MKRN4PQ13434 485 aaPredicted RBP12.32□□□□□ -0.44
CCDC93-207ENST00000474006 RTN4Q9NQC3 1192 aaKnown RBP12.32□□□□□ -0.44
CCDC93-207ENST00000474006 RAPGEF2Q9Y4G8 1499 aa12.31□□□□□ -0.44
CCDC93-207ENST00000474006 SYNJ2O15056 1496 aa12.3□□□□□ -0.44
CCDC93-207ENST00000474006 POLA2Q14181 598 aa12.3□□□□□ -0.44
CCDC93-207ENST00000474006 OSCARQ8IYS5 282 aa12.28□□□□□ -0.44
CCDC93-207ENST00000474006 SPDYE4A6NLX3 237 aa12.26□□□□□ -0.45
CCDC93-207ENST00000474006 PBRM1Q86U86 1689 aa12.26□□□□□ -0.45
CCDC93-207ENST00000474006 GRIN2AQ12879 1464 aa12.25□□□□□ -0.45
CCDC93-207ENST00000474006 ADAMTS12P58397 1594 aa12.24□□□□□ -0.45
CCDC93-207ENST00000474006 GOLGA3Q08378 1498 aa12.24□□□□□ -0.45
CCDC93-207ENST00000474006 CUL7Q14999 1698 aa12.24□□□□□ -0.45
CCDC93-207ENST00000474006 RANGAP1P46060 587 aaPredicted RBP12.22□□□□□ -0.45
CCDC93-207ENST00000474006 KIF21BO75037 1637 aa12.21□□□□□ -0.46
CCDC93-207ENST00000474006 TNIKQ9UKE5 1360 aa12.2□□□□□ -0.46
CCDC93-207ENST00000474006 JPH4Q96JJ6 628 aa12.2□□□□□ -0.46
CCDC93-207ENST00000474006 ZBTB12Q9Y330 459 aaPredicted RBP12.2□□□□□ -0.46
CCDC93-207ENST00000474006 NUP160Q12769 1436 aa12.2□□□□□ -0.46
CCDC93-207ENST00000474006 PROM2Q8N271 834 aa12.19□□□□□ -0.46
CCDC93-207ENST00000474006 KIAA0586Q9BVV6 1533 aa12.17□□□□□ -0.46
CCDC93-207ENST00000474006 FBXO3Q9UK99 471 aa12.15□□□□□ -0.46
CCDC93-207ENST00000474006 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
CCDC93-207ENST00000474006 CEP170Q5SW79 1584 aa12.13□□□□□ -0.47
CCDC93-207ENST00000474006 ABCB7O75027 752 aa12.12□□□□□ -0.47
CCDC93-207ENST00000474006 CHD1O14646 1710 aa12.11□□□□□ -0.47
CCDC93-207ENST00000474006 CLIP1P30622 1438 aa12.08□□□□□ -0.48
CCDC93-207ENST00000474006 PRG4Q92954 1404 aaPredicted RBP12.08□□□□□ -0.48
CCDC93-207ENST00000474006 CEP162Q5TB80 1403 aa12.07□□□□□ -0.48
CCDC93-207ENST00000474006 TTBK1Q5TCY1 1321 aaPredicted RBP12.07□□□□□ -0.48
CCDC93-207ENST00000474006 CLASP1Q7Z460 1538 aa12.06□□□□□ -0.48
CCDC93-207ENST00000474006 IQGAP2Q13576 1575 aa12.06□□□□□ -0.48
CCDC93-207ENST00000474006 DSG3P32926 999 aa12.06□□□□□ -0.48
CCDC93-207ENST00000474006 CARMIL2Q6F5E8 1435 aa12.04□□□□□ -0.48
CCDC93-207ENST00000474006 UGGT2Q9NYU1 1516 aa12.04□□□□□ -0.48
CCDC93-207ENST00000474006 ARHGAP35Q9NRY4 1499 aa12.02□□□□□ -0.48
CCDC93-207ENST00000474006 DISP1Q96F81 1524 aa12.02□□□□□ -0.48
CCDC93-207ENST00000474006 DNAJC5Q9H3Z4 198 aa12.01□□□□□ -0.49
CCDC93-207ENST00000474006 PTPRGP23470 1445 aa12□□□□□ -0.49
CCDC93-207ENST00000474006 FHOD3Q2V2M9 1422 aa12□□□□□ -0.49
CCDC93-207ENST00000474006 CTTNBP2Q8WZ74 1663 aa11.98□□□□□ -0.49
CCDC93-207ENST00000474006 SHROOM2Q13796 1616 aa11.97□□□□□ -0.49
CCDC93-207ENST00000474006 ERCC6L2Q5T890 1561 aa11.97□□□□□ -0.49
CCDC93-207ENST00000474006 ARAP1Q96P48 1450 aa11.97□□□□□ -0.49
CCDC93-207ENST00000474006 CYB5RLQ6IPT4 315 aa11.97□□□□□ -0.49
CCDC93-207ENST00000474006 ATP1B4Q9UN42 357 aaPredicted RBP11.97□□□□□ -0.49
CCDC93-207ENST00000474006 VASPP50552 380 aaPredicted RBP11.96□□□□□ -0.49
CCDC93-207ENST00000474006 EFCAB5A4FU69 1503 aa11.96□□□□□ -0.5
CCDC93-207ENST00000474006 SAMD9Q5K651 1589 aa11.94□□□□□ -0.5
CCDC93-207ENST00000474006 FMN1Q68DA7 1419 aa11.93□□□□□ -0.5
CCDC93-207ENST00000474006 KIAA0556O60303 1618 aa11.93□□□□□ -0.5
CCDC93-207ENST00000474006 ARHGEF11O15085 1522 aa11.92□□□□□ -0.5
CCDC93-207ENST00000474006 ARID3CA6NKF2 412 aa11.91□□□□□ -0.5
CCDC93-207ENST00000474006 SPDYE2BA6NHP3 402 aa11.9□□□□□ -0.5
CCDC93-207ENST00000474006 SPDYE6P0CI01 402 aa11.9□□□□□ -0.5
CCDC93-207ENST00000474006 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
CCDC93-207ENST00000474006 VPS8Q8N3P4 1428 aa11.9□□□□□ -0.5
CCDC93-207ENST00000474006 UACAQ9BZF9 1416 aa11.89□□□□□ -0.51
CCDC93-207ENST00000474006 PLB1Q6P1J6 1458 aa11.89□□□□□ -0.51
CCDC93-207ENST00000474006 CASKIN1Q8WXD9 1431 aa11.87□□□□□ -0.51
CCDC93-207ENST00000474006 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
CCDC93-207ENST00000474006 ZNF692Q9BU19 519 aaPredicted RBP11.87□□□□□ -0.51
CCDC93-207ENST00000474006 NPM1P06748 294 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC93-207ENST00000474006 SSUH2Q9Y2M2 353 aa11.85□□□□□ -0.51
CCDC93-207ENST00000474006 RIMBP3CA6NJZ7 1639 aa11.85□□□□□ -0.51
CCDC93-207ENST00000474006 RIMBP3BA6NNM3 1639 aa11.85□□□□□ -0.51
CCDC93-207ENST00000474006 RIMBP3Q9UFD9 1639 aa11.85□□□□□ -0.51
CCDC93-207ENST00000474006 CACNB1Q02641 598 aaPredicted RBP11.83□□□□□ -0.52
CCDC93-207ENST00000474006 KANK4Q5T7N3 995 aaPredicted RBP11.82□□□□□ -0.52
CCDC93-207ENST00000474006 PPARGC1BQ86YN6 1023 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms