RNA–Protein interactions for RNA: ENST00000474006.1

CCDC93-207, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-207ENST00000474006 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
CCDC93-207ENST00000474006 AEBP2Q6ZN18 517 aaPredicted RBP20.42■□□□□ 0.86
CCDC93-207ENST00000474006 PHF23Q9BUL5 403 aaPredicted RBP17.97■□□□□ 0.47
CCDC93-207ENST00000474006 NISCHQ9Y2I1 1504 aa17.64■□□□□ 0.41
CCDC93-207ENST00000474006 SENP3Q9H4L4 574 aaPredicted RBP17.3■□□□□ 0.36
CCDC93-207ENST00000474006 PLPPR3Q6T4P5 718 aa16.78■□□□□ 0.28
CCDC93-207ENST00000474006 FOXD1Q16676 465 aa15.96■□□□□ 0.15
CCDC93-207ENST00000474006 ADRA2BP18089 450 aa15.69■□□□□ 0.1
CCDC93-207ENST00000474006 PPP6R1Q9UPN7 881 aa15.69■□□□□ 0.1
CCDC93-207ENST00000474006 CCDC180Q9P1Z9 1646 aa15.38■□□□□ 0.05
CCDC93-207ENST00000474006 PIAS4Q8N2W9 510 aaPredicted RBP15.15■□□□□ 0.02
CCDC93-207ENST00000474006 ABCC9O60706 1549 aa14.98□□□□□ -0.01
CCDC93-207ENST00000474006 KCNA4P22459 653 aa14.96□□□□□ -0.01
CCDC93-207ENST00000474006 DCAF8L2P0C7V8 631 aa14.84□□□□□ -0.03
CCDC93-207ENST00000474006 PPP4R3CPQ6ZMV5 832 aa14.82□□□□□ -0.04
CCDC93-207ENST00000474006 ZCCHC6Q5VYS8 1495 aaKnown RBP14.71□□□□□ -0.05
CCDC93-207ENST00000474006 MSH5O43196 834 aa14.58□□□□□ -0.08
CCDC93-207ENST00000474006 NCBP3Q53F19 620 aaKnown RBP14.58□□□□□ -0.08
CCDC93-207ENST00000474006 DCAF1Q9Y4B6 1507 aa14.56□□□□□ -0.08
CCDC93-207ENST00000474006 NACADO15069 1562 aa14.51□□□□□ -0.09
CCDC93-207ENST00000474006 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
CCDC93-207ENST00000474006 RB1CC1Q8TDY2 1594 aa14.43□□□□□ -0.1
CCDC93-207ENST00000474006 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
CCDC93-207ENST00000474006 EHMT2Q96KQ7 1210 aa14.38□□□□□ -0.11
CCDC93-207ENST00000474006 NPM3O75607 178 aaKnown RBP14.34□□□□□ -0.11
CCDC93-207ENST00000474006 SLC4A1APQ9BWU0 796 aaKnown RBP14.34□□□□□ -0.11
CCDC93-207ENST00000474006 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
CCDC93-207ENST00000474006 SHROOM4Q9ULL8 1493 aa14.24□□□□□ -0.13
CCDC93-207ENST00000474006 PABPN1Q86U42 306 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC93-207ENST00000474006 SCRIBQ14160 1630 aa14.16□□□□□ -0.14
CCDC93-207ENST00000474006 MAPK8IP2Q13387 824 aaPredicted RBP14.09□□□□□ -0.15
CCDC93-207ENST00000474006 CSRNP3Q8WYN3 585 aa14.07□□□□□ -0.16
CCDC93-207ENST00000474006 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
CCDC93-207ENST00000474006 BICRAQ9NZM4 1560 aa14□□□□□ -0.17
CCDC93-207ENST00000474006 UNC13AQ9UPW8 1703 aa13.96□□□□□ -0.17
CCDC93-207ENST00000474006 RNF216Q9NWF9 866 aaPredicted RBP13.95□□□□□ -0.18
CCDC93-207ENST00000474006 DMRT2Q9Y5R5 561 aa13.88□□□□□ -0.19
CCDC93-207ENST00000474006 HOXD11P31277 338 aaPredicted RBP13.79□□□□□ -0.2
CCDC93-207ENST00000474006 ZBTB22O15209 634 aa13.78□□□□□ -0.2
CCDC93-207ENST00000474006 CECR2Q9BXF3 1484 aa13.76□□□□□ -0.21
CCDC93-207ENST00000474006 FOXD4L1Q9NU39 408 aa13.67□□□□□ -0.22
CCDC93-207ENST00000474006 POTEDQ86YR6 584 aa13.64□□□□□ -0.23
CCDC93-207ENST00000474006 RSF1Q96T23 1441 aaPredicted RBP13.61□□□□□ -0.23
CCDC93-207ENST00000474006 EIF4G1Q04637 1599 aaKnown RBP13.61□□□□□ -0.23
CCDC93-207ENST00000474006 MROH2BQ7Z745 1585 aa13.61□□□□□ -0.23
CCDC93-207ENST00000474006 BAZ1AQ9NRL2 1556 aaPredicted RBP13.61□□□□□ -0.23
CCDC93-207ENST00000474006 SUPT5HO00267 1087 aaKnown RBP13.6□□□□□ -0.23
CCDC93-207ENST00000474006 SMARCA4P51532 1647 aa13.56□□□□□ -0.24
CCDC93-207ENST00000474006 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
CCDC93-207ENST00000474006 CC2D2AQ9P2K1 1620 aa13.48□□□□□ -0.25
CCDC93-207ENST00000474006 NCAPD3P42695 1498 aa13.46□□□□□ -0.25
CCDC93-207ENST00000474006 SLC4A2P04920 1241 aa13.44□□□□□ -0.26
CCDC93-207ENST00000474006 SMARCA2P51531 1590 aa13.43□□□□□ -0.26
CCDC93-207ENST00000474006 WIZO95785 1651 aa13.42□□□□□ -0.26
CCDC93-207ENST00000474006 PEG3Q9GZU2 1588 aa13.41□□□□□ -0.26
CCDC93-207ENST00000474006 BAZ1BQ9UIG0 1483 aaKnown RBP13.38□□□□□ -0.27
CCDC93-207ENST00000474006 HMGXB3Q12766 1538 aa13.32□□□□□ -0.28
CCDC93-207ENST00000474006 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
CCDC93-207ENST00000474006 MYCNP04198 464 aaPredicted RBP13.27□□□□□ -0.29
CCDC93-207ENST00000474006 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
CCDC93-207ENST00000474006 ATXN8OSP0DMR3 200 aa13.21□□□□□ -0.29
CCDC93-207ENST00000474006 DCAF8L1A6NGE4 600 aa13.15□□□□□ -0.3
CCDC93-207ENST00000474006 CADPSQ9ULU8 1353 aa13.12□□□□□ -0.31
CCDC93-207ENST00000474006 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.07□□□□□ -0.322e-6■■■□□ 17.6
CCDC93-207ENST00000474006 CFTRP13569 1480 aa13.05□□□□□ -0.32
CCDC93-207ENST00000474006 NESP48681 1621 aa13.04□□□□□ -0.32
CCDC93-207ENST00000474006 PDS5BQ9NTI5 1447 aa12.97□□□□□ -0.33
CCDC93-207ENST00000474006 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.97□□□□□ -0.33
CCDC93-207ENST00000474006 HNRNPUL2Q1KMD3 747 aaKnown RBP12.97□□□□□ -0.33
CCDC93-207ENST00000474006 LAMC3Q9Y6N6 1575 aa12.96□□□□□ -0.33
CCDC93-207ENST00000474006 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
CCDC93-207ENST00000474006 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
CCDC93-207ENST00000474006 FANCD2Q9BXW9 1451 aa12.91□□□□□ -0.34
CCDC93-207ENST00000474006 ERCC6Q03468 1493 aa12.87□□□□□ -0.35
CCDC93-207ENST00000474006 CEP164Q9UPV0 1460 aa12.84□□□□□ -0.35
CCDC93-207ENST00000474006 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
CCDC93-207ENST00000474006 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
CCDC93-207ENST00000474006 WRNQ14191 1432 aaPredicted RBP eCLIP12.8□□□□□ -0.36
CCDC93-207ENST00000474006 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
CCDC93-207ENST00000474006 MRC2Q9UBG0 1479 aa12.77□□□□□ -0.37
CCDC93-207ENST00000474006 URB2Q14146 1524 aaKnown RBP12.75□□□□□ -0.37
CCDC93-207ENST00000474006 KIF21AQ7Z4S6 1674 aa12.74□□□□□ -0.37
CCDC93-207ENST00000474006 CUX1P39880 1505 aa12.73□□□□□ -0.37
CCDC93-207ENST00000474006 APLP2Q06481 763 aa12.73□□□□□ -0.37
CCDC93-207ENST00000474006 TOPBP1Q92547 1522 aa12.72□□□□□ -0.37
CCDC93-207ENST00000474006 PRDM2Q13029 1718 aa12.71□□□□□ -0.38
CCDC93-207ENST00000474006 DNMBPQ6XZF7 1577 aa12.69□□□□□ -0.38
CCDC93-207ENST00000474006 SYNJ1O43426 1573 aa12.68□□□□□ -0.38
CCDC93-207ENST00000474006 FKBP8Q14318 412 aa12.67□□□□□ -0.38
CCDC93-207ENST00000474006 SOGA1O94964 1423 aa12.67□□□□□ -0.38
CCDC93-207ENST00000474006 WDR62O43379 1518 aa12.67□□□□□ -0.38
CCDC93-207ENST00000474006 TOP2BQ02880 1626 aa12.66□□□□□ -0.38
CCDC93-207ENST00000474006 FGD5Q6ZNL6 1462 aa12.65□□□□□ -0.38
CCDC93-207ENST00000474006 POLA1P09884 1462 aaPredicted RBP12.65□□□□□ -0.38
CCDC93-207ENST00000474006 THOC2Q8NI27 1593 aaKnown RBP12.64□□□□□ -0.39
CCDC93-207ENST00000474006 RAD54L2Q9Y4B4 1467 aa12.64□□□□□ -0.39
CCDC93-207ENST00000474006 CUX2O14529 1486 aa12.62□□□□□ -0.39
CCDC93-207ENST00000474006 ZNF219Q9P2Y4 722 aaPredicted RBP12.61□□□□□ -0.39
CCDC93-207ENST00000474006 BIVM-ERCC5R4GMW8 1640 aa12.59□□□□□ -0.39
CCDC93-207ENST00000474006 TDRD9Q8NDG6 1382 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms