RNA–Protein interactions for RNA: ENST00000471538.1

SPEN-204, Transcript of spen family transcriptional repressor, humanhuman

TSL 2

Gene SPEN, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-204ENST00000471538 CEP164Q9UPV0 1460 aa10.26□□□□□ -0.77
SPEN-204ENST00000471538 HRCP23327 699 aa10.25□□□□□ -0.77
SPEN-204ENST00000471538 TRIM26Q12899 539 aaPredicted RBP10.24□□□□□ -0.77
SPEN-204ENST00000471538 TOP2BQ02880 1626 aa10.24□□□□□ -0.77
SPEN-204ENST00000471538 BIVM-ERCC5R4GMW8 1640 aa10.24□□□□□ -0.77
SPEN-204ENST00000471538 FANCD2Q9BXW9 1451 aa10.23□□□□□ -0.77
SPEN-204ENST00000471538 URB2Q14146 1524 aaKnown RBP10.22□□□□□ -0.77
SPEN-204ENST00000471538 AKT1S1Q96B36 256 aa10.22□□□□□ -0.77
SPEN-204ENST00000471538 PRDM2Q13029 1718 aa10.22□□□□□ -0.77
SPEN-204ENST00000471538 CFTRP13569 1480 aa10.2□□□□□ -0.78
SPEN-204ENST00000471538 TNIKQ9UKE5 1360 aa10.2□□□□□ -0.78
SPEN-204ENST00000471538 KIF21BO75037 1637 aa10.19□□□□□ -0.78
SPEN-204ENST00000471538 CSRNP3Q8WYN3 585 aa10.19□□□□□ -0.78
SPEN-204ENST00000471538 EHMT2Q96KQ7 1210 aa10.18□□□□□ -0.78
SPEN-204ENST00000471538 GOLGA3Q08378 1498 aa10.18□□□□□ -0.78
SPEN-204ENST00000471538 ARHGEF11O15085 1522 aa10.17□□□□□ -0.78
SPEN-204ENST00000471538 MYCNP04198 464 aaPredicted RBP10.17□□□□□ -0.78
SPEN-204ENST00000471538 PIP4P2Q8N4L2 257 aa10.17□□□□□ -0.78
SPEN-204ENST00000471538 CEP162Q5TB80 1403 aa10.16□□□□□ -0.78
SPEN-204ENST00000471538 CUX1P39880 1505 aa10.15□□□□□ -0.78
SPEN-204ENST00000471538 ZNF608Q9ULD9 1512 aaPredicted RBP10.14□□□□□ -0.79
SPEN-204ENST00000471538 REM2Q8IYK8 340 aaPredicted RBP10.13□□□□□ -0.79
SPEN-204ENST00000471538 CYB5RLQ6IPT4 315 aa10.08□□□□□ -0.8
SPEN-204ENST00000471538 ARAP1Q96P48 1450 aa10.08□□□□□ -0.8
SPEN-204ENST00000471538 FXR2P51116 673 aaKnown RBP eCLIP10.07□□□□□ -0.8
SPEN-204ENST00000471538 RAPGEF2Q9Y4G8 1499 aa10.07□□□□□ -0.8
SPEN-204ENST00000471538 ERICH3Q5RHP9 1530 aa10.07□□□□□ -0.8
SPEN-204ENST00000471538 IFT140Q96RY7 1462 aa10.06□□□□□ -0.8
SPEN-204ENST00000471538 PRXQ9BXM0 1461 aa10.06□□□□□ -0.8
SPEN-204ENST00000471538 HAX1O00165 279 aa10.05□□□□□ -0.8
SPEN-204ENST00000471538 ATF5Q9Y2D1 282 aaPredicted RBP10.05□□□□□ -0.8
SPEN-204ENST00000471538 EIF4G3O43432 1585 aaKnown RBP10.05□□□□□ -0.8
SPEN-204ENST00000471538 CHD1O14646 1710 aa10.05□□□□□ -0.8
SPEN-204ENST00000471538 UBTFP17480 764 aaKnown RBP10.04□□□□□ -0.8
SPEN-204ENST00000471538 PITPNM1O00562 1244 aa10.02□□□□□ -0.81
SPEN-204ENST00000471538 ZBTB12Q9Y330 459 aaPredicted RBP10.02□□□□□ -0.81
SPEN-204ENST00000471538 TOPBP1Q92547 1522 aa10.02□□□□□ -0.81
SPEN-204ENST00000471538 KIF27Q86VH2 1401 aa10.01□□□□□ -0.81
SPEN-204ENST00000471538 CLIP1P30622 1438 aa10.01□□□□□ -0.81
SPEN-204ENST00000471538 EVX2Q03828 476 aa10□□□□□ -0.81
SPEN-204ENST00000471538 AQRO60306 1485 aaKnown RBP eCLIP9.99□□□□□ -0.81
SPEN-204ENST00000471538 TARBP1Q13395 1621 aaKnown RBP9.99□□□□□ -0.81
SPEN-204ENST00000471538 PPARGC1BQ86YN6 1023 aaKnown RBP9.99□□□□□ -0.81
SPEN-204ENST00000471538 SLC4A1APQ9BWU0 796 aaKnown RBP9.99□□□□□ -0.81
SPEN-204ENST00000471538 VPS8Q8N3P4 1428 aa9.98□□□□□ -0.81
SPEN-204ENST00000471538 FGD5Q6ZNL6 1462 aa9.97□□□□□ -0.81
SPEN-204ENST00000471538 FOXD4L1Q9NU39 408 aa9.97□□□□□ -0.81
SPEN-204ENST00000471538 DNMBPQ6XZF7 1577 aa9.96□□□□□ -0.82
SPEN-204ENST00000471538 ZEB1P37275 1124 aaPredicted RBP9.94□□□□□ -0.82
SPEN-204ENST00000471538 IGF1RP08069 1367 aa9.92□□□□□ -0.82
SPEN-204ENST00000471538 CLASP1Q7Z460 1538 aa9.92□□□□□ -0.82
SPEN-204ENST00000471538 FBLN2P98095 1184 aa9.91□□□□□ -0.82
SPEN-204ENST00000471538 POLA1P09884 1462 aaPredicted RBP9.91□□□□□ -0.82
SPEN-204ENST00000471538 ABCA10Q8WWZ4 1543 aa9.9□□□□□ -0.82
SPEN-204ENST00000471538 RAD54L2Q9Y4B4 1467 aa9.9□□□□□ -0.82
SPEN-204ENST00000471538 WDR97A6NE52 1622 aa9.89□□□□□ -0.83
SPEN-204ENST00000471538 TDRD9Q8NDG6 1382 aaKnown RBP9.87□□□□□ -0.83
SPEN-204ENST00000471538 SNAPC4Q5SXM2 1469 aa9.87□□□□□ -0.83
SPEN-204ENST00000471538 ARHGAP35Q9NRY4 1499 aa9.87□□□□□ -0.83
SPEN-204ENST00000471538 CARMIL1Q5VZK9 1371 aa9.85□□□□□ -0.83
SPEN-204ENST00000471538 CUL7Q14999 1698 aa9.83□□□□□ -0.84
SPEN-204ENST00000471538 ABCA5Q8WWZ7 1642 aa9.83□□□□□ -0.84
SPEN-204ENST00000471538 TTBK1Q5TCY1 1321 aaPredicted RBP9.82□□□□□ -0.84
SPEN-204ENST00000471538 GAPVD1Q14C86 1478 aa9.8□□□□□ -0.84
SPEN-204ENST00000471538 ERCC6L2Q5T890 1561 aa9.79□□□□□ -0.84
SPEN-204ENST00000471538 MAP3K1Q13233 1512 aa9.78□□□□□ -0.84
SPEN-204ENST00000471538 MAGI1Q96QZ7 1491 aaPredicted RBP9.78□□□□□ -0.84
SPEN-204ENST00000471538 RANGAP1P46060 587 aaPredicted RBP9.78□□□□□ -0.84
SPEN-204ENST00000471538 CHMP7Q8WUX9 453 aaPredicted RBP9.78□□□□□ -0.84
SPEN-204ENST00000471538 SYNJ2O15056 1496 aa9.78□□□□□ -0.84
SPEN-204ENST00000471538 CTTNBP2Q8WZ74 1663 aa9.77□□□□□ -0.84
SPEN-204ENST00000471538 ZBTB22O15209 634 aa9.77□□□□□ -0.85
SPEN-204ENST00000471538 GRIN2BQ13224 1484 aa9.77□□□□□ -0.85
SPEN-204ENST00000471538 C19orf67A6NJJ6 358 aa9.76□□□□□ -0.85
SPEN-204ENST00000471538 EFCAB5A4FU69 1503 aa9.75□□□□□ -0.85
SPEN-204ENST00000471538 PBRM1Q86U86 1689 aa9.75□□□□□ -0.85
SPEN-204ENST00000471538 CCER1Q8TC90 406 aaPredicted RBP9.75□□□□□ -0.85
SPEN-204ENST00000471538 RRBP1Q9P2E9 1410 aaKnown RBP9.74□□□□□ -0.85
SPEN-204ENST00000471538 TIAM1Q13009 1591 aa9.74□□□□□ -0.85
SPEN-204ENST00000471538 PRKAR2AP13861 404 aaKnown RBP9.73□□□□□ -0.85
SPEN-204ENST00000471538 KANK4Q5T7N3 995 aaPredicted RBP9.73□□□□□ -0.85
SPEN-204ENST00000471538 CFAP43Q8NDM7 1665 aa9.73□□□□□ -0.85
SPEN-204ENST00000471538 KIF13AQ9H1H9 1805 aa9.73□□□□□ -0.85
SPEN-204ENST00000471538 PCF11O94913 1555 aaKnown RBP9.72□□□□□ -0.85
SPEN-204ENST00000471538 SPDYE2BA6NHP3 402 aa9.72□□□□□ -0.85
SPEN-204ENST00000471538 SPDYE6P0CI01 402 aa9.72□□□□□ -0.85
SPEN-204ENST00000471538 SPDYE2Q495Y8 402 aa9.72□□□□□ -0.85
SPEN-204ENST00000471538 FHAD1B1AJZ9 1412 aa9.71□□□□□ -0.85
SPEN-204ENST00000471538 GABBR2O75899 941 aa9.71□□□□□ -0.86
SPEN-204ENST00000471538 LHX8Q68G74 356 aa9.71□□□□□ -0.86
SPEN-204ENST00000471538 SAMD9Q5K651 1589 aa9.71□□□□□ -0.86
SPEN-204ENST00000471538 CEP170Q5SW79 1584 aa9.68□□□□□ -0.86
SPEN-204ENST00000471538 LRRC9Q6ZRR7 1453 aa9.68□□□□□ -0.86
SPEN-204ENST00000471538 FYCO1Q9BQS8 1478 aa9.68□□□□□ -0.86
SPEN-204ENST00000471538 FHOD3Q2V2M9 1422 aa9.68□□□□□ -0.86
SPEN-204ENST00000471538 CASKIN1Q8WXD9 1431 aa9.67□□□□□ -0.86
SPEN-204ENST00000471538 ADAMTS12P58397 1594 aa9.67□□□□□ -0.86
SPEN-204ENST00000471538 GRIN2AQ12879 1464 aa9.66□□□□□ -0.86
SPEN-204ENST00000471538 SHROOM2Q13796 1616 aa9.66□□□□□ -0.86
SPEN-204ENST00000471538 ATXN8OSP0DMR3 200 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms