RNA–Protein interactions for RNA: ENST00000471538.1

SPEN-204, Transcript of spen family transcriptional repressor, humanhuman

TSL 2

Gene SPEN, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-204ENST00000471538 AEBP2Q6ZN18 517 aaPredicted RBP18.62■□□□□ 0.57
SPEN-204ENST00000471538 CHIC1Q5VXU3 224 aa17.29■□□□□ 0.36
SPEN-204ENST00000471538 SENP3Q9H4L4 574 aaPredicted RBP15.87■□□□□ 0.13
SPEN-204ENST00000471538 PHF23Q9BUL5 403 aaPredicted RBP15.63■□□□□ 0.09
SPEN-204ENST00000471538 FOXD1Q16676 465 aa14.9□□□□□ -0.02
SPEN-204ENST00000471538 POTEDQ86YR6 584 aa14.56□□□□□ -0.08
SPEN-204ENST00000471538 MSH5O43196 834 aa14.07□□□□□ -0.16
SPEN-204ENST00000471538 NISCHQ9Y2I1 1504 aa14.05□□□□□ -0.16
SPEN-204ENST00000471538 PIAS4Q8N2W9 510 aaPredicted RBP13.73□□□□□ -0.21
SPEN-204ENST00000471538 PPP6R1Q9UPN7 881 aa13.62□□□□□ -0.23
SPEN-204ENST00000471538 ADRA2BP18089 450 aa13.48□□□□□ -0.25
SPEN-204ENST00000471538 PLPPR3Q6T4P5 718 aa13.48□□□□□ -0.25
SPEN-204ENST00000471538 MAPK8IP2Q13387 824 aaPredicted RBP12.55□□□□□ -0.4
SPEN-204ENST00000471538 DMRT2Q9Y5R5 561 aa12.55□□□□□ -0.4
SPEN-204ENST00000471538 ABCC9O60706 1549 aa12.49□□□□□ -0.41
SPEN-204ENST00000471538 CACNB1Q02641 598 aaPredicted RBP12.31□□□□□ -0.44
SPEN-204ENST00000471538 SCAF1Q9H7N4 1312 aaKnown RBP12.27□□□□□ -0.45
SPEN-204ENST00000471538 CCDC180Q9P1Z9 1646 aa12.24□□□□□ -0.45
SPEN-204ENST00000471538 DNAJC5BQ9UF47 199 aa12.06□□□□□ -0.48
SPEN-204ENST00000471538 RNF39Q9H2S5 420 aa12.01□□□□□ -0.49
SPEN-204ENST00000471538 HOXD11P31277 338 aaPredicted RBP11.94□□□□□ -0.5
SPEN-204ENST00000471538 DCAF8L1A6NGE4 600 aa11.92□□□□□ -0.5
SPEN-204ENST00000471538 ZCCHC6Q5VYS8 1495 aaKnown RBP11.87□□□□□ -0.51
SPEN-204ENST00000471538 C1QBPQ07021 282 aaKnown RBP11.77□□□□□ -0.52
SPEN-204ENST00000471538 PPP4R3CPQ6ZMV5 832 aa11.77□□□□□ -0.52
SPEN-204ENST00000471538 RB1CC1Q8TDY2 1594 aa11.7□□□□□ -0.54
SPEN-204ENST00000471538 RNF216Q9NWF9 866 aaPredicted RBP11.69□□□□□ -0.54
SPEN-204ENST00000471538 CNKSR2Q8WXI2 1034 aa11.66□□□□□ -0.54
SPEN-204ENST00000471538 DCAF1Q9Y4B6 1507 aa11.63□□□□□ -0.55
SPEN-204ENST00000471538 PABPN1Q86U42 306 aaKnown RBP eCLIP11.59□□□□□ -0.55
SPEN-204ENST00000471538 SHROOM4Q9ULL8 1493 aa11.59□□□□□ -0.55
SPEN-204ENST00000471538 NACADO15069 1562 aa11.55□□□□□ -0.56
SPEN-204ENST00000471538 UNC13AQ9UPW8 1703 aa11.55□□□□□ -0.56
SPEN-204ENST00000471538 BICRAQ9NZM4 1560 aa11.48□□□□□ -0.57
SPEN-204ENST00000471538 MYO15BQ96JP2 1530 aa11.45□□□□□ -0.58
SPEN-204ENST00000471538 DCAF8L2P0C7V8 631 aa11.4□□□□□ -0.58
SPEN-204ENST00000471538 POTEHQ6S545 545 aa11.29□□□□□ -0.6
SPEN-204ENST00000471538 CC2D2AQ9P2K1 1620 aa11.27□□□□□ -0.6
SPEN-204ENST00000471538 CECR2Q9BXF3 1484 aa11.26□□□□□ -0.61
SPEN-204ENST00000471538 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.26□□□□□ -0.618e-7■■□□□ 11.6
SPEN-204ENST00000471538 SUPT5HO00267 1087 aaKnown RBP11.24□□□□□ -0.61
SPEN-204ENST00000471538 DNAJC5Q9H3Z4 198 aa11.21□□□□□ -0.61
SPEN-204ENST00000471538 SCRIBQ14160 1630 aa11.18□□□□□ -0.62
SPEN-204ENST00000471538 EIF4G1Q04637 1599 aaKnown RBP11.17□□□□□ -0.62
SPEN-204ENST00000471538 NCBP3Q53F19 620 aaKnown RBP11.16□□□□□ -0.62
SPEN-204ENST00000471538 DSG3P32926 999 aa11.09□□□□□ -0.63
SPEN-204ENST00000471538 U3KPZ7 1027 aaPredicted RBP11.06□□□□□ -0.64
SPEN-204ENST00000471538 NPM3O75607 178 aaKnown RBP11.04□□□□□ -0.64
SPEN-204ENST00000471538 SPINK5Q9NQ38 1064 aaPredicted RBP11.02□□□□□ -0.64
SPEN-204ENST00000471538 RSF1Q96T23 1441 aaPredicted RBP10.99□□□□□ -0.65
SPEN-204ENST00000471538 CAPN15O75808 1086 aa10.94□□□□□ -0.66
SPEN-204ENST00000471538 MROH2BQ7Z745 1585 aa10.87□□□□□ -0.67
SPEN-204ENST00000471538 CUX2O14529 1486 aa10.84□□□□□ -0.67
SPEN-204ENST00000471538 BAZ1AQ9NRL2 1556 aaPredicted RBP10.81□□□□□ -0.68
SPEN-204ENST00000471538 WIZO95785 1651 aa10.79□□□□□ -0.68
SPEN-204ENST00000471538 SMARCA4P51532 1647 aa10.75□□□□□ -0.69
SPEN-204ENST00000471538 ERCC6Q03468 1493 aa10.74□□□□□ -0.69
SPEN-204ENST00000471538 SLC4A2P04920 1241 aa10.7□□□□□ -0.7
SPEN-204ENST00000471538 NCAPD3P42695 1498 aa10.7□□□□□ -0.7
SPEN-204ENST00000471538 TOP2AP11388 1531 aaKnown RBP10.69□□□□□ -0.7
SPEN-204ENST00000471538 NESP48681 1621 aa10.68□□□□□ -0.7
SPEN-204ENST00000471538 ABCB7O75027 752 aa10.67□□□□□ -0.7
SPEN-204ENST00000471538 TRHP20396 242 aaPredicted RBP10.67□□□□□ -0.7
SPEN-204ENST00000471538 KCNA4P22459 653 aa10.64□□□□□ -0.71
SPEN-204ENST00000471538 ZNF219Q9P2Y4 722 aaPredicted RBP10.64□□□□□ -0.71
SPEN-204ENST00000471538 ATAD2BQ9ULI0 1458 aa10.63□□□□□ -0.71
SPEN-204ENST00000471538 THOC2Q8NI27 1593 aaKnown RBP10.63□□□□□ -0.71
SPEN-204ENST00000471538 PEG3Q9GZU2 1588 aa10.63□□□□□ -0.71
SPEN-204ENST00000471538 SMARCA2P51531 1590 aa10.61□□□□□ -0.71
SPEN-204ENST00000471538 HMGXB3Q12766 1538 aa10.58□□□□□ -0.72
SPEN-204ENST00000471538 APLP2Q06481 763 aa10.58□□□□□ -0.72
SPEN-204ENST00000471538 TRIM41Q8WV44 630 aa10.58□□□□□ -0.72
SPEN-204ENST00000471538 CCDC88BA6NC98 1476 aa10.57□□□□□ -0.72
SPEN-204ENST00000471538 KIF21AQ7Z4S6 1674 aa10.52□□□□□ -0.72
SPEN-204ENST00000471538 LOC105371045A0A1W2PR82 267 aa10.52□□□□□ -0.73
SPEN-204ENST00000471538 RBM42Q9BTD8 480 aaKnown RBP10.51□□□□□ -0.73
SPEN-204ENST00000471538 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.5□□□□□ -0.73
SPEN-204ENST00000471538 HNRNPUL2Q1KMD3 747 aaKnown RBP10.5□□□□□ -0.73
SPEN-204ENST00000471538 CHRDL2Q6WN34 429 aa10.5□□□□□ -0.73
SPEN-204ENST00000471538 LAMC3Q9Y6N6 1575 aa10.48□□□□□ -0.73
SPEN-204ENST00000471538 BAZ1BQ9UIG0 1483 aaKnown RBP10.48□□□□□ -0.73
SPEN-204ENST00000471538 ABCC8Q09428 1581 aa10.44□□□□□ -0.74
SPEN-204ENST00000471538 SAMD1Q6SPF0 538 aaPredicted RBP10.43□□□□□ -0.74
SPEN-204ENST00000471538 PDS5BQ9NTI5 1447 aa10.4□□□□□ -0.74
SPEN-204ENST00000471538 WDR62O43379 1518 aa10.38□□□□□ -0.75
SPEN-204ENST00000471538 MRC2Q9UBG0 1479 aa10.37□□□□□ -0.75
SPEN-204ENST00000471538 SP7Q8TDD2 431 aaPredicted RBP10.37□□□□□ -0.75
SPEN-204ENST00000471538 FAM9AQ8IZU1 332 aaPredicted RBP10.35□□□□□ -0.75
SPEN-204ENST00000471538 CADPSQ9ULU8 1353 aa10.34□□□□□ -0.75
SPEN-204ENST00000471538 POLA2Q14181 598 aa10.32□□□□□ -0.76
SPEN-204ENST00000471538 WRNQ14191 1432 aaPredicted RBP eCLIP10.31□□□□□ -0.76
SPEN-204ENST00000471538 SYNJ1O43426 1573 aa10.31□□□□□ -0.76
SPEN-204ENST00000471538 EEA1Q15075 1411 aa10.3□□□□□ -0.76
SPEN-204ENST00000471538 PCGF6Q9BYE7 350 aa10.29□□□□□ -0.76
SPEN-204ENST00000471538 SOGA1O94964 1423 aa10.29□□□□□ -0.76
SPEN-204ENST00000471538 OSCARQ8IYS5 282 aa10.27□□□□□ -0.77
SPEN-204ENST00000471538 RIMBP3CA6NJZ7 1639 aa10.26□□□□□ -0.77
SPEN-204ENST00000471538 RIMBP3BA6NNM3 1639 aa10.26□□□□□ -0.77
SPEN-204ENST00000471538 RIMBP3Q9UFD9 1639 aa10.26□□□□□ -0.77
SPEN-204ENST00000471538 RUSC2Q8N2Y8 1516 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms