RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 CFAP43Q8NDM7 1665 aa27.58■■■□□ 2.01
SDCBP-204ENST00000447182 ITGAEP38570 1179 aa27.56■■■□□ 2
SDCBP-204ENST00000447182 PHLDB1Q86UU1 1377 aa27.53■■■□□ 2
SDCBP-204ENST00000447182 PCF11O94913 1555 aaKnown RBP27.49■■□□□ 1.99
SDCBP-204ENST00000447182 SUPT16HQ9Y5B9 1047 aaKnown RBP27.46■■□□□ 1.99
SDCBP-204ENST00000447182 EFCAB5A4FU69 1503 aa27.42■■□□□ 1.98
SDCBP-204ENST00000447182 TIMELESSQ9UNS1 1208 aa27.41■■□□□ 1.98
SDCBP-204ENST00000447182 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.41■■□□□ 1.98
SDCBP-204ENST00000447182 FYCO1Q9BQS8 1478 aa27.41■■□□□ 1.98
SDCBP-204ENST00000447182 AQRO60306 1485 aaKnown RBP eCLIP27.39■■□□□ 1.98
SDCBP-204ENST00000447182 FANCD2Q9BXW9 1451 aa27.39■■□□□ 1.98
SDCBP-204ENST00000447182 ABCA10Q8WWZ4 1543 aa27.38■■□□□ 1.97
SDCBP-204ENST00000447182 DNMBPQ6XZF7 1577 aa27.37■■□□□ 1.97
SDCBP-204ENST00000447182 WDR97A6NE52 1622 aa27.37■■□□□ 1.97
SDCBP-204ENST00000447182 CC2D2AQ9P2K1 1620 aa27.36■■□□□ 1.97
SDCBP-204ENST00000447182 CASKIN1Q8WXD9 1431 aa27.35■■□□□ 1.97
SDCBP-204ENST00000447182 FAM50AQ14320 339 aaKnown RBP27.35■■□□□ 1.97
SDCBP-204ENST00000447182 CUL7Q14999 1698 aa27.33■■□□□ 1.97
SDCBP-204ENST00000447182 FHOD3Q2V2M9 1422 aa27.31■■□□□ 1.96
SDCBP-204ENST00000447182 CTTNBP2Q8WZ74 1663 aa27.29■■□□□ 1.96
SDCBP-204ENST00000447182 SIN3AQ96ST3 1273 aa27.28■■□□□ 1.96
SDCBP-204ENST00000447182 POLA1P09884 1462 aaPredicted RBP27.28■■□□□ 1.96
SDCBP-204ENST00000447182 TOPBP1Q92547 1522 aa27.27■■□□□ 1.96
SDCBP-204ENST00000447182 RAD54L2Q9Y4B4 1467 aa27.26■■□□□ 1.95
SDCBP-204ENST00000447182 P3H3Q8IVL6 736 aa27.26■■□□□ 1.95
SDCBP-204ENST00000447182 KCNH8Q96L42 1107 aa27.22■■□□□ 1.95
SDCBP-204ENST00000447182 FMN1Q68DA7 1419 aa27.21■■□□□ 1.95
SDCBP-204ENST00000447182 PPP1R15AO75807 674 aaPredicted RBP27.2■■□□□ 1.95
SDCBP-204ENST00000447182 FGD6Q6ZV73 1430 aa27.19■■□□□ 1.94
SDCBP-204ENST00000447182 DDX10Q13206 875 aaKnown RBP27.17■■□□□ 1.94
SDCBP-204ENST00000447182 ATP1B4Q9UN42 357 aaPredicted RBP27.17■■□□□ 1.94
SDCBP-204ENST00000447182 SNAPC4Q5SXM2 1469 aa27.17■■□□□ 1.94
SDCBP-204ENST00000447182 HFM1A2PYH4 1435 aa27.1■■□□□ 1.93
SDCBP-204ENST00000447182 SAMD9Q5K651 1589 aa27.1■■□□□ 1.93
SDCBP-204ENST00000447182 CCER2I3L3R5 266 aa27.09■■□□□ 1.93
SDCBP-204ENST00000447182 CCDC18Q5T9S5 1454 aa27.08■■□□□ 1.93
SDCBP-204ENST00000447182 UACAQ9BZF9 1416 aa27.07■■□□□ 1.92
SDCBP-204ENST00000447182 TSHZ2Q9NRE2 1034 aa27.07■■□□□ 1.92
SDCBP-204ENST00000447182 THOC2Q8NI27 1593 aaKnown RBP27.05■■□□□ 1.92
SDCBP-204ENST00000447182 PTPN23Q9H3S7 1636 aa27.05■■□□□ 1.92
SDCBP-204ENST00000447182 MTUS2Q5JR59 1369 aa27.04■■□□□ 1.92
SDCBP-204ENST00000447182 NESP48681 1621 aa27.03■■□□□ 1.92
SDCBP-204ENST00000447182 ABCA5Q8WWZ7 1642 aa27.03■■□□□ 1.92
SDCBP-204ENST00000447182 LRRIQ1Q96JM4 1722 aa27.03■■□□□ 1.92
SDCBP-204ENST00000447182 PTPRKQ15262 1439 aa27.02■■□□□ 1.92
SDCBP-204ENST00000447182 TONSLQ96HA7 1378 aa27.01■■□□□ 1.91
SDCBP-204ENST00000447182 GRIN2BQ13224 1484 aa27.01■■□□□ 1.91
SDCBP-204ENST00000447182 MYOM3Q5VTT5 1437 aa26.99■■□□□ 1.91
SDCBP-204ENST00000447182 LAMC3Q9Y6N6 1575 aa26.99■■□□□ 1.91
SDCBP-204ENST00000447182 URB2Q14146 1524 aaKnown RBP26.98■■□□□ 1.91
SDCBP-204ENST00000447182 NCOA2Q15596 1464 aa26.98■■□□□ 1.91
SDCBP-204ENST00000447182 ANP32CO43423 234 aa26.98■■□□□ 1.91
SDCBP-204ENST00000447182 NAIPQ13075 1403 aa26.97■■□□□ 1.91
SDCBP-204ENST00000447182 SUPT6HQ7KZ85 1726 aaKnown RBP26.96■■□□□ 1.91
SDCBP-204ENST00000447182 EHBP1L1Q8N3D4 1523 aa26.95■■□□□ 1.91
SDCBP-204ENST00000447182 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
SDCBP-204ENST00000447182 HIRIP3Q9BW71 556 aaPredicted RBP26.92■■□□□ 1.9
SDCBP-204ENST00000447182 GAPVD1Q14C86 1478 aa26.91■■□□□ 1.9
SDCBP-204ENST00000447182 ARHGEF11O15085 1522 aa26.91■■□□□ 1.9
SDCBP-204ENST00000447182 UGGT2Q9NYU1 1516 aa26.89■■□□□ 1.9
SDCBP-204ENST00000447182 FKBP8Q14318 412 aa26.89■■□□□ 1.9
SDCBP-204ENST00000447182 KDM5BQ9UGL1 1544 aa26.88■■□□□ 1.89
SDCBP-204ENST00000447182 TDRD9Q8NDG6 1382 aaKnown RBP26.86■■□□□ 1.89
SDCBP-204ENST00000447182 TCOF1Q13428 1488 aaKnown RBP26.82■■□□□ 1.88
SDCBP-204ENST00000447182 NEFLP07196 543 aa26.81■■□□□ 1.88
SDCBP-204ENST00000447182 GCC2Q8IWJ2 1684 aa26.8■■□□□ 1.88
SDCBP-204ENST00000447182 AKNAQ7Z591 1439 aa26.79■■□□□ 1.88
SDCBP-204ENST00000447182 MAGI3Q5TCQ9 1506 aa26.78■■□□□ 1.88
SDCBP-204ENST00000447182 BCANQ96GW7 911 aa26.78■■□□□ 1.88
SDCBP-204ENST00000447182 HECW1Q76N89 1606 aa26.77■■□□□ 1.88
SDCBP-204ENST00000447182 TRIM52Q96A61 297 aa26.77■■□□□ 1.88
SDCBP-204ENST00000447182 PDS5BQ9NTI5 1447 aa26.76■■□□□ 1.87
SDCBP-204ENST00000447182 TARBP1Q13395 1621 aaKnown RBP26.72■■□□□ 1.87
SDCBP-204ENST00000447182 DENND4BO75064 1496 aaPredicted RBP26.71■■□□□ 1.87
SDCBP-204ENST00000447182 MIA2Q96PC5 1412 aa26.68■■□□□ 1.86
SDCBP-204ENST00000447182 ANP32EQ9BTT0 268 aa26.67■■□□□ 1.86
SDCBP-204ENST00000447182 EPRSP07814 1512 aaKnown RBP26.65■■□□□ 1.86
SDCBP-204ENST00000447182 RRP7BPQ9NSQ0 103 aa26.63■■□□□ 1.85
SDCBP-204ENST00000447182 IQGAP2Q13576 1575 aa26.63■■□□□ 1.85
SDCBP-204ENST00000447182 PBRM1Q86U86 1689 aa26.62■■□□□ 1.85
SDCBP-204ENST00000447182 WASHC2AQ641Q2 1341 aa26.61■■□□□ 1.85
SDCBP-204ENST00000447182 KDM6BO15054 1643 aa26.6■■□□□ 1.85
SDCBP-204ENST00000447182 HSPA5P11021 654 aaKnown RBP26.6■■□□□ 1.85
SDCBP-204ENST00000447182 WDR62O43379 1518 aa26.58■■□□□ 1.85
SDCBP-204ENST00000447182 CHIC2Q9UKJ5 165 aa26.57■■□□□ 1.84
SDCBP-204ENST00000447182 ADAMTS12P58397 1594 aa26.55■■□□□ 1.84
SDCBP-204ENST00000447182 EIF4G2P78344 907 aaKnown RBP eCLIP26.55■■□□□ 1.84
SDCBP-204ENST00000447182 MPHOSPH9Q99550 1183 aa26.54■■□□□ 1.84
SDCBP-204ENST00000447182 CDK13Q14004 1512 aaKnown RBP26.53■■□□□ 1.84
SDCBP-204ENST00000447182 RBM19Q9Y4C8 960 aaKnown RBP26.53■■□□□ 1.84
SDCBP-204ENST00000447182 CNTLNQ9NXG0 1405 aa26.52■■□□□ 1.84
SDCBP-204ENST00000447182 HNRNPUQ00839 825 aaKnown RBP eCLIP26.51■■□□□ 1.84
SDCBP-204ENST00000447182 ROCK1Q13464 1354 aa26.51■■□□□ 1.83
SDCBP-204ENST00000447182 NCOA1Q15788 1441 aa26.48■■□□□ 1.83
SDCBP-204ENST00000447182 L3MBTL2Q969R5 705 aa26.47■■□□□ 1.83
SDCBP-204ENST00000447182 RPRD2Q5VT52 1461 aaKnown RBP26.46■■□□□ 1.83
SDCBP-204ENST00000447182 DAPK1P53355 1430 aa26.44■■□□□ 1.82
SDCBP-204ENST00000447182 ANKRD30BQ9BXX2 1392 aa26.44■■□□□ 1.82
SDCBP-204ENST00000447182 DNMT1P26358 1616 aaKnown RBP26.44■■□□□ 1.82
SDCBP-204ENST00000447182 CCDC7Q96M83 1385 aa26.42■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms