RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TSHZ2Q9NRE2 1034 aa23.49■■□□□ 1.35
SDC4-201ENST00000372733 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
SDC4-201ENST00000372733 SIN3AQ96ST3 1273 aa23.47■■□□□ 1.35
SDC4-201ENST00000372733 FAM50AQ14320 339 aaKnown RBP23.46■■□□□ 1.35
SDC4-201ENST00000372733 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
SDC4-201ENST00000372733 DDX10Q13206 875 aaKnown RBP23.43■■□□□ 1.34
SDC4-201ENST00000372733 FGD5Q6ZNL6 1462 aa23.43■■□□□ 1.34
SDC4-201ENST00000372733 PCF11O94913 1555 aaKnown RBP23.42■■□□□ 1.34
SDC4-201ENST00000372733 CFAP43Q8NDM7 1665 aa23.41■■□□□ 1.34
SDC4-201ENST00000372733 P3H3Q8IVL6 736 aa23.39■■□□□ 1.33
SDC4-201ENST00000372733 BCANQ96GW7 911 aa23.38■■□□□ 1.33
SDC4-201ENST00000372733 FHAD1B1AJZ9 1412 aa23.38■■□□□ 1.33
SDC4-201ENST00000372733 ATP1B4Q9UN42 357 aaPredicted RBP23.35■■□□□ 1.33
SDC4-201ENST00000372733 CADPSQ9ULU8 1353 aa23.33■■□□□ 1.32
SDC4-201ENST00000372733 PPP1R15AO75807 674 aaPredicted RBP23.32■■□□□ 1.32
SDC4-201ENST00000372733 HIRIP3Q9BW71 556 aaPredicted RBP23.32■■□□□ 1.32
SDC4-201ENST00000372733 FHOD3Q2V2M9 1422 aa23.31■■□□□ 1.32
SDC4-201ENST00000372733 FKBP8Q14318 412 aa23.29■■□□□ 1.32
SDC4-201ENST00000372733 FYCO1Q9BQS8 1478 aa23.24■■□□□ 1.31
SDC4-201ENST00000372733 TIMELESSQ9UNS1 1208 aa23.23■■□□□ 1.31
SDC4-201ENST00000372733 CASKIN1Q8WXD9 1431 aa23.19■■□□□ 1.3
SDC4-201ENST00000372733 TRIM52Q96A61 297 aa23.19■■□□□ 1.3
SDC4-201ENST00000372733 ANP32EQ9BTT0 268 aa23.17■■□□□ 1.3
SDC4-201ENST00000372733 RAD54L2Q9Y4B4 1467 aa23.17■■□□□ 1.3
SDC4-201ENST00000372733 EFCAB5A4FU69 1503 aa23.17■■□□□ 1.3
SDC4-201ENST00000372733 ANP32CO43423 234 aa23.16■■□□□ 1.3
SDC4-201ENST00000372733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.16■■□□□ 1.3
SDC4-201ENST00000372733 CCER2I3L3R5 266 aa23.16■■□□□ 1.3
SDC4-201ENST00000372733 FANCD2Q9BXW9 1451 aa23.15■■□□□ 1.3
SDC4-201ENST00000372733 FGD6Q6ZV73 1430 aa23.15■■□□□ 1.3
SDC4-201ENST00000372733 AQRO60306 1485 aaKnown RBP eCLIP23.13■■□□□ 1.291e-8■■■■■ 32
SDC4-201ENST00000372733 TONSLQ96HA7 1378 aa23.13■■□□□ 1.29
SDC4-201ENST00000372733 CCDC18Q5T9S5 1454 aa23.13■■□□□ 1.29
SDC4-201ENST00000372733 NEFLP07196 543 aa23.13■■□□□ 1.29
SDC4-201ENST00000372733 ABCA10Q8WWZ4 1543 aa23.1■■□□□ 1.29
SDC4-201ENST00000372733 PTPRKQ15262 1439 aa23.08■■□□□ 1.29
SDC4-201ENST00000372733 DNMBPQ6XZF7 1577 aa23.08■■□□□ 1.29
SDC4-201ENST00000372733 POLA1P09884 1462 aaPredicted RBP23.08■■□□□ 1.29
SDC4-201ENST00000372733 CTTNBP2Q8WZ74 1663 aa23.07■■□□□ 1.28
SDC4-201ENST00000372733 SNAPC4Q5SXM2 1469 aa23.07■■□□□ 1.28
SDC4-201ENST00000372733 CC2D2AQ9P2K1 1620 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 HFM1A2PYH4 1435 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 PTPN23Q9H3S7 1636 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 MTUS2Q5JR59 1369 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 FMN1Q68DA7 1419 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 UACAQ9BZF9 1416 aa23.05■■□□□ 1.28
SDC4-201ENST00000372733 TOPBP1Q92547 1522 aa23.04■■□□□ 1.28
SDC4-201ENST00000372733 CUL7Q14999 1698 aa23.04■■□□□ 1.28
SDC4-201ENST00000372733 NAIPQ13075 1403 aa22.98■■□□□ 1.27
SDC4-201ENST00000372733 RBM19Q9Y4C8 960 aaKnown RBP22.98■■□□□ 1.27
SDC4-201ENST00000372733 LRRIQ1Q96JM4 1722 aa22.97■■□□□ 1.27
SDC4-201ENST00000372733 NCOA2Q15596 1464 aa22.96■■□□□ 1.27
SDC4-201ENST00000372733 KDM5BQ9UGL1 1544 aa22.96■■□□□ 1.27
SDC4-201ENST00000372733 MYOM3Q5VTT5 1437 aa22.94■■□□□ 1.26
SDC4-201ENST00000372733 NESP48681 1621 aa22.93■■□□□ 1.26
SDC4-201ENST00000372733 SAMD9Q5K651 1589 aa22.91■■□□□ 1.26
SDC4-201ENST00000372733 GRIN2BQ13224 1484 aa22.9■■□□□ 1.26
SDC4-201ENST00000372733 HNRNPUQ00839 825 aaKnown RBP eCLIP22.89■■□□□ 1.25
SDC4-201ENST00000372733 SUPT6HQ7KZ85 1726 aaKnown RBP22.87■■□□□ 1.25
SDC4-201ENST00000372733 EHBP1L1Q8N3D4 1523 aa22.86■■□□□ 1.25
SDC4-201ENST00000372733 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
SDC4-201ENST00000372733 IRX6P78412 446 aaPredicted RBP22.83■■□□□ 1.25
SDC4-201ENST00000372733 RRP7BPQ9NSQ0 103 aa22.83■■□□□ 1.25
SDC4-201ENST00000372733 WASHC2AQ641Q2 1341 aa22.83■■□□□ 1.25
SDC4-201ENST00000372733 THOC2Q8NI27 1593 aaKnown RBP22.83■■□□□ 1.24
SDC4-201ENST00000372733 UGGT2Q9NYU1 1516 aa22.82■■□□□ 1.24
SDC4-201ENST00000372733 HSPA5P11021 654 aaKnown RBP22.82■■□□□ 1.24
SDC4-201ENST00000372733 URB2Q14146 1524 aaKnown RBP22.82■■□□□ 1.24
SDC4-201ENST00000372733 MAGI3Q5TCQ9 1506 aa22.81■■□□□ 1.24
SDC4-201ENST00000372733 ABCA5Q8WWZ7 1642 aa22.81■■□□□ 1.24
SDC4-201ENST00000372733 CHIC2Q9UKJ5 165 aa22.8■■□□□ 1.24
SDC4-201ENST00000372733 DENND4BO75064 1496 aaPredicted RBP22.8■■□□□ 1.24
SDC4-201ENST00000372733 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
SDC4-201ENST00000372733 HECW1Q76N89 1606 aa22.77■■□□□ 1.24
SDC4-201ENST00000372733 GAPVD1Q14C86 1478 aa22.76■■□□□ 1.23
SDC4-201ENST00000372733 GCC2Q8IWJ2 1684 aa22.76■■□□□ 1.23
SDC4-201ENST00000372733 KDM6BO15054 1643 aa22.76■■□□□ 1.23
SDC4-201ENST00000372733 MSH5O43196 834 aa22.73■■□□□ 1.23
SDC4-201ENST00000372733 TCOF1Q13428 1488 aaKnown RBP22.72■■□□□ 1.23
SDC4-201ENST00000372733 CCDC184Q52MB2 194 aa22.71■■□□□ 1.23
SDC4-201ENST00000372733 EIF4G2P78344 907 aaKnown RBP eCLIP22.71■■□□□ 1.23
SDC4-201ENST00000372733 CNTLNQ9NXG0 1405 aa22.71■■□□□ 1.23
SDC4-201ENST00000372733 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
SDC4-201ENST00000372733 KIF21AQ7Z4S6 1674 aa22.69■■□□□ 1.22
SDC4-201ENST00000372733 AKNAQ7Z591 1439 aa22.67■■□□□ 1.22
SDC4-201ENST00000372733 FOXD1Q16676 465 aa22.66■■□□□ 1.22
SDC4-201ENST00000372733 DNAJC5BQ9UF47 199 aa22.66■■□□□ 1.22
SDC4-201ENST00000372733 CDK11AQ9UQ88 783 aaPredicted RBP22.66■■□□□ 1.22
SDC4-201ENST00000372733 L3MBTL2Q969R5 705 aa22.65■■□□□ 1.22
SDC4-201ENST00000372733 MPHOSPH9Q99550 1183 aa22.65■■□□□ 1.22
SDC4-201ENST00000372733 C11orf95C9JLR9 678 aaPredicted RBP22.64■■□□□ 1.22
SDC4-201ENST00000372733 BCL11AQ9H165 835 aa22.64■■□□□ 1.22
SDC4-201ENST00000372733 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
SDC4-201ENST00000372733 NCOA1Q15788 1441 aa22.62■■□□□ 1.21
SDC4-201ENST00000372733 CCDC7Q96M83 1385 aa22.62■■□□□ 1.21
SDC4-201ENST00000372733 ARID3CA6NKF2 412 aa22.61■■□□□ 1.21
SDC4-201ENST00000372733 EPRSP07814 1512 aaKnown RBP22.61■■□□□ 1.21
SDC4-201ENST00000372733 FANCIQ9NVI1 1328 aa22.6■■□□□ 1.21
SDC4-201ENST00000372733 FAM9BQ8IZU0 186 aa22.6■■□□□ 1.21
SDC4-201ENST00000372733 PRKRIP1Q9H875 184 aaPredicted RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms