RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PHLDB1Q86UU1 1377 aa19.23■□□□□ 0.67
SKA3-202ENST00000314759 BCANQ96GW7 911 aa19.21■□□□□ 0.67
SKA3-202ENST00000314759 SIN3AQ96ST3 1273 aa19.21■□□□□ 0.67
SKA3-202ENST00000314759 CARMIL1Q5VZK9 1371 aa19.2■□□□□ 0.66
SKA3-202ENST00000314759 WDR97A6NE52 1622 aa19.2■□□□□ 0.66
SKA3-202ENST00000314759 DDX10Q13206 875 aaKnown RBP19.19■□□□□ 0.66
SKA3-202ENST00000314759 FAM50AQ14320 339 aaKnown RBP19.18■□□□□ 0.66
SKA3-202ENST00000314759 BCL11AQ9H165 835 aa19.17■□□□□ 0.66
SKA3-202ENST00000314759 PPP1R15AO75807 674 aaPredicted RBP19.13■□□□□ 0.65
SKA3-202ENST00000314759 FHAD1B1AJZ9 1412 aa19.12■□□□□ 0.65
SKA3-202ENST00000314759 PRDM2Q13029 1718 aa19.12■□□□□ 0.65
SKA3-202ENST00000314759 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
SKA3-202ENST00000314759 TIMELESSQ9UNS1 1208 aa19.11■□□□□ 0.65
SKA3-202ENST00000314759 FKBP8Q14318 412 aa19.1■□□□□ 0.65
SKA3-202ENST00000314759 P3H3Q8IVL6 736 aa19.1■□□□□ 0.65
SKA3-202ENST00000314759 CADPSQ9ULU8 1353 aa19.08■□□□□ 0.65
SKA3-202ENST00000314759 CFAP43Q8NDM7 1665 aa19.08■□□□□ 0.64
SKA3-202ENST00000314759 PCF11O94913 1555 aaKnown RBP19.08■□□□□ 0.64
SKA3-202ENST00000314759 HIRIP3Q9BW71 556 aaPredicted RBP19.07■□□□□ 0.64
SKA3-202ENST00000314759 ATP1B4Q9UN42 357 aaPredicted RBP19.07■□□□□ 0.64
SKA3-202ENST00000314759 FHOD3Q2V2M9 1422 aa19.02■□□□□ 0.63
SKA3-202ENST00000314759 CCER2I3L3R5 266 aa19.01■□□□□ 0.63
SKA3-202ENST00000314759 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19■□□□□ 0.63
SKA3-202ENST00000314759 RBM19Q9Y4C8 960 aaKnown RBP18.99■□□□□ 0.63
SKA3-202ENST00000314759 FYCO1Q9BQS8 1478 aa18.98■□□□□ 0.63
SKA3-202ENST00000314759 ANP32CO43423 234 aa18.98■□□□□ 0.63
SKA3-202ENST00000314759 TRIM52Q96A61 297 aa18.98■□□□□ 0.63
SKA3-202ENST00000314759 CASKIN1Q8WXD9 1431 aa18.96■□□□□ 0.63
SKA3-202ENST00000314759 NEFLP07196 543 aa18.93■□□□□ 0.62
SKA3-202ENST00000314759 AQRO60306 1485 aaKnown RBP eCLIP18.93■□□□□ 0.623e-7■■■■■ 51.3
SKA3-202ENST00000314759 EFCAB5A4FU69 1503 aa18.92■□□□□ 0.62
SKA3-202ENST00000314759 FGD6Q6ZV73 1430 aa18.92■□□□□ 0.62
SKA3-202ENST00000314759 TONSLQ96HA7 1378 aa18.91■□□□□ 0.62
SKA3-202ENST00000314759 RAD54L2Q9Y4B4 1467 aa18.91■□□□□ 0.62
SKA3-202ENST00000314759 FANCD2Q9BXW9 1451 aa18.89■□□□□ 0.61
SKA3-202ENST00000314759 CCDC18Q5T9S5 1454 aa18.88■□□□□ 0.61
SKA3-202ENST00000314759 PTPRKQ15262 1439 aa18.88■□□□□ 0.61
SKA3-202ENST00000314759 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
SKA3-202ENST00000314759 HFM1A2PYH4 1435 aa18.86■□□□□ 0.61
SKA3-202ENST00000314759 UACAQ9BZF9 1416 aa18.86■□□□□ 0.61
SKA3-202ENST00000314759 CC2D2AQ9P2K1 1620 aa18.86■□□□□ 0.61
SKA3-202ENST00000314759 FMN1Q68DA7 1419 aa18.85■□□□□ 0.61
SKA3-202ENST00000314759 MSH5O43196 834 aa18.84■□□□□ 0.61
SKA3-202ENST00000314759 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
SKA3-202ENST00000314759 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
SKA3-202ENST00000314759 DNMBPQ6XZF7 1577 aa18.83■□□□□ 0.6
SKA3-202ENST00000314759 MTUS2Q5JR59 1369 aa18.83■□□□□ 0.6
SKA3-202ENST00000314759 PTPN23Q9H3S7 1636 aa18.81■□□□□ 0.6
SKA3-202ENST00000314759 CTTNBP2Q8WZ74 1663 aa18.81■□□□□ 0.6
SKA3-202ENST00000314759 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
SKA3-202ENST00000314759 NAIPQ13075 1403 aa18.8■□□□□ 0.6
SKA3-202ENST00000314759 CUL7Q14999 1698 aa18.8■□□□□ 0.6
SKA3-202ENST00000314759 KDM5BQ9UGL1 1544 aa18.77■□□□□ 0.6
SKA3-202ENST00000314759 NCOA2Q15596 1464 aa18.76■□□□□ 0.59
SKA3-202ENST00000314759 MYOM3Q5VTT5 1437 aa18.75■□□□□ 0.59
SKA3-202ENST00000314759 LRRIQ1Q96JM4 1722 aa18.73■□□□□ 0.59
SKA3-202ENST00000314759 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
SKA3-202ENST00000314759 GRIN2BQ13224 1484 aa18.71■□□□□ 0.59
SKA3-202ENST00000314759 SAMD9Q5K651 1589 aa18.7■□□□□ 0.58
SKA3-202ENST00000314759 WASHC2AQ641Q2 1341 aa18.7■□□□□ 0.58
SKA3-202ENST00000314759 NESP48681 1621 aa18.69■□□□□ 0.58
SKA3-202ENST00000314759 HSPA5P11021 654 aaKnown RBP18.68■□□□□ 0.58
SKA3-202ENST00000314759 IRX6P78412 446 aaPredicted RBP18.68■□□□□ 0.58
SKA3-202ENST00000314759 RRP7BPQ9NSQ0 103 aa18.67■□□□□ 0.58
SKA3-202ENST00000314759 SUPT6HQ7KZ85 1726 aaKnown RBP18.67■□□□□ 0.58
SKA3-202ENST00000314759 TDRD9Q8NDG6 1382 aaKnown RBP18.65■□□□□ 0.58
SKA3-202ENST00000314759 EHBP1L1Q8N3D4 1523 aa18.65■□□□□ 0.58
SKA3-202ENST00000314759 DENND4BO75064 1496 aaPredicted RBP18.65■□□□□ 0.58
SKA3-202ENST00000314759 CHIC2Q9UKJ5 165 aa18.64■□□□□ 0.57
SKA3-202ENST00000314759 THOC2Q8NI27 1593 aaKnown RBP18.64■□□□□ 0.57
SKA3-202ENST00000314759 UGGT2Q9NYU1 1516 aa18.64■□□□□ 0.57
SKA3-202ENST00000314759 ARHGEF11O15085 1522 aa18.63■□□□□ 0.57
SKA3-202ENST00000314759 MAGI3Q5TCQ9 1506 aa18.62■□□□□ 0.57
SKA3-202ENST00000314759 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
SKA3-202ENST00000314759 FANCIQ9NVI1 1328 aa18.61■□□□□ 0.57
SKA3-202ENST00000314759 EIF4G2P78344 907 aaKnown RBP eCLIP18.61■□□□□ 0.57
SKA3-202ENST00000314759 CCDC184Q52MB2 194 aa18.6■□□□□ 0.57
SKA3-202ENST00000314759 ABCA5Q8WWZ7 1642 aa18.6■□□□□ 0.57
SKA3-202ENST00000314759 GAPVD1Q14C86 1478 aa18.59■□□□□ 0.57
SKA3-202ENST00000314759 TCOF1Q13428 1488 aaKnown RBP18.58■□□□□ 0.57
SKA3-202ENST00000314759 CDK11AQ9UQ88 783 aaPredicted RBP18.58■□□□□ 0.56
SKA3-202ENST00000314759 LAMC3Q9Y6N6 1575 aa18.57■□□□□ 0.56
SKA3-202ENST00000314759 HECW1Q76N89 1606 aa18.57■□□□□ 0.56
SKA3-202ENST00000314759 CNTLNQ9NXG0 1405 aa18.56■□□□□ 0.56
SKA3-202ENST00000314759 KDM6BO15054 1643 aa18.56■□□□□ 0.56
SKA3-202ENST00000314759 GCC2Q8IWJ2 1684 aa18.56■□□□□ 0.56
SKA3-202ENST00000314759 C11orf95C9JLR9 678 aaPredicted RBP18.56■□□□□ 0.56
SKA3-202ENST00000314759 L3MBTL2Q969R5 705 aa18.56■□□□□ 0.56
SKA3-202ENST00000314759 MPHOSPH9Q99550 1183 aa18.56■□□□□ 0.56
SKA3-202ENST00000314759 ERICH6Q7L0X2 663 aa18.55■□□□□ 0.56
SKA3-202ENST00000314759 AKNAQ7Z591 1439 aa18.54■□□□□ 0.56
SKA3-202ENST00000314759 ERICH6BQ5W0A0 696 aa18.53■□□□□ 0.56
SKA3-202ENST00000314759 PRKRIP1Q9H875 184 aaPredicted RBP18.53■□□□□ 0.56
SKA3-202ENST00000314759 FOXD1Q16676 465 aa18.53■□□□□ 0.56
SKA3-202ENST00000314759 NCOA1Q15788 1441 aa18.51■□□□□ 0.55
SKA3-202ENST00000314759 CCDC7Q96M83 1385 aa18.51■□□□□ 0.55
SKA3-202ENST00000314759 PPP4R2Q9NY27 417 aa18.5■□□□□ 0.55
SKA3-202ENST00000314759 KIF21AQ7Z4S6 1674 aa18.49■□□□□ 0.55
SKA3-202ENST00000314759 FAM9BQ8IZU0 186 aa18.49■□□□□ 0.55
SKA3-202ENST00000314759 MIA2Q96PC5 1412 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 117.8 ms