RNA–Protein interactions for RNA: ENST00000306320.9

RETREG1-201, Transcript of reticulophagy regulator 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG1, Length 3,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG1-201ENST00000306320 TRIM52Q96A61 297 aa25.62■■□□□ 1.69
RETREG1-201ENST00000306320 RAD54L2Q9Y4B4 1467 aa25.62■■□□□ 1.69
RETREG1-201ENST00000306320 BIVM-ERCC5R4GMW8 1640 aa25.6■■□□□ 1.69
RETREG1-201ENST00000306320 HIRIP3Q9BW71 556 aaPredicted RBP25.6■■□□□ 1.69
RETREG1-201ENST00000306320 FGD5Q6ZNL6 1462 aa25.6■■□□□ 1.69
RETREG1-201ENST00000306320 ARHGAP35Q9NRY4 1499 aa25.57■■□□□ 1.68
RETREG1-201ENST00000306320 CC2D2AQ9P2K1 1620 aa25.56■■□□□ 1.68
RETREG1-201ENST00000306320 RBM19Q9Y4C8 960 aaKnown RBP25.55■■□□□ 1.68
RETREG1-201ENST00000306320 DDX10Q13206 875 aaKnown RBP25.54■■□□□ 1.68
RETREG1-201ENST00000306320 IRX6P78412 446 aaPredicted RBP25.51■■□□□ 1.67
RETREG1-201ENST00000306320 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
RETREG1-201ENST00000306320 TDRD9Q8NDG6 1382 aaKnown RBP25.49■■□□□ 1.67
RETREG1-201ENST00000306320 DHX57Q6P158 1386 aaKnown RBP25.47■■□□□ 1.67
RETREG1-201ENST00000306320 CLSPNQ9HAW4 1339 aa25.47■■□□□ 1.67
RETREG1-201ENST00000306320 ERICH3Q5RHP9 1530 aa25.45■■□□□ 1.66
RETREG1-201ENST00000306320 SIN3AQ96ST3 1273 aa25.45■■□□□ 1.66
RETREG1-201ENST00000306320 CCNB3Q8WWL7 1395 aa25.44■■□□□ 1.66
RETREG1-201ENST00000306320 FHOD3Q2V2M9 1422 aa25.43■■□□□ 1.66
RETREG1-201ENST00000306320 PHLDB1Q86UU1 1377 aa25.32■■□□□ 1.64
RETREG1-201ENST00000306320 RAB3GAP2Q9H2M9 1393 aa25.31■■□□□ 1.64
RETREG1-201ENST00000306320 POLA1P09884 1462 aaPredicted RBP25.26■■□□□ 1.63
RETREG1-201ENST00000306320 MSH5O43196 834 aa25.24■■□□□ 1.63
RETREG1-201ENST00000306320 CHIC2Q9UKJ5 165 aa25.23■■□□□ 1.63
RETREG1-201ENST00000306320 TOPBP1Q92547 1522 aa25.21■■□□□ 1.63
RETREG1-201ENST00000306320 RRBP1Q9P2E9 1410 aaKnown RBP25.2■■□□□ 1.62
RETREG1-201ENST00000306320 NBR1Q14596 966 aa25.18■■□□□ 1.62
RETREG1-201ENST00000306320 CNGB1Q14028 1251 aaPredicted RBP25.13■■□□□ 1.61
RETREG1-201ENST00000306320 LRRC9Q6ZRR7 1453 aa25.12■■□□□ 1.61
RETREG1-201ENST00000306320 CDK11AQ9UQ88 783 aaPredicted RBP25.12■■□□□ 1.61
RETREG1-201ENST00000306320 ANP32CO43423 234 aa25.1■■□□□ 1.61
RETREG1-201ENST00000306320 RRP7BPQ9NSQ0 103 aa25.1■■□□□ 1.61
RETREG1-201ENST00000306320 MTUS2Q5JR59 1369 aa25.1■■□□□ 1.61
RETREG1-201ENST00000306320 URB2Q14146 1524 aaKnown RBP25.08■■□□□ 1.61
RETREG1-201ENST00000306320 FBLN2P98095 1184 aa25.08■■□□□ 1.61
RETREG1-201ENST00000306320 TIAM1Q13009 1591 aa25.07■■□□□ 1.6
RETREG1-201ENST00000306320 HNRNPUQ00839 825 aaKnown RBP eCLIP25.06■■□□□ 1.6
RETREG1-201ENST00000306320 SETD5Q9C0A6 1442 aa25.06■■□□□ 1.6
RETREG1-201ENST00000306320 PCF11O94913 1555 aaKnown RBP25.05■■□□□ 1.6
RETREG1-201ENST00000306320 FHAD1B1AJZ9 1412 aa25.04■■□□□ 1.6
RETREG1-201ENST00000306320 DNMBPQ6XZF7 1577 aa25.01■■□□□ 1.59
RETREG1-201ENST00000306320 AQRO60306 1485 aaKnown RBP eCLIP25■■□□□ 1.59
RETREG1-201ENST00000306320 ABCA10Q8WWZ4 1543 aa24.98■■□□□ 1.59
RETREG1-201ENST00000306320 DEKP35659 375 aaKnown RBP24.98■■□□□ 1.59
RETREG1-201ENST00000306320 PRKCSHP14314 528 aaPredicted RBP24.97■■□□□ 1.59
RETREG1-201ENST00000306320 SENP3-EIF4A1A0A087X0R7 540 aa24.97■■□□□ 1.59
RETREG1-201ENST00000306320 GAPVD1Q14C86 1478 aa24.96■■□□□ 1.59
RETREG1-201ENST00000306320 FOXD1Q16676 465 aa24.95■■□□□ 1.58
RETREG1-201ENST00000306320 PRDM2Q13029 1718 aa24.94■■□□□ 1.58
RETREG1-201ENST00000306320 PDS5BQ9NTI5 1447 aa24.91■■□□□ 1.58
RETREG1-201ENST00000306320 RTN4Q9NQC3 1192 aaKnown RBP24.89■■□□□ 1.58
RETREG1-201ENST00000306320 MAPKBP1O60336 1514 aa24.88■■□□□ 1.57
RETREG1-201ENST00000306320 B4GALNT3Q6L9W6 998 aa24.87■■□□□ 1.57
RETREG1-201ENST00000306320 PTPRKQ15262 1439 aa24.83■■□□□ 1.57
RETREG1-201ENST00000306320 CASKIN1Q8WXD9 1431 aa24.83■■□□□ 1.57
RETREG1-201ENST00000306320 ANO8Q9HCE9 1232 aaPredicted RBP24.82■■□□□ 1.56
RETREG1-201ENST00000306320 WDR97A6NE52 1622 aa24.81■■□□□ 1.56
RETREG1-201ENST00000306320 ZNF777Q9ULD5 760 aaPredicted RBP24.81■■□□□ 1.56
RETREG1-201ENST00000306320 FMN1Q68DA7 1419 aa24.8■■□□□ 1.56
RETREG1-201ENST00000306320 TONSLQ96HA7 1378 aa24.78■■□□□ 1.56
RETREG1-201ENST00000306320 FGD6Q6ZV73 1430 aa24.78■■□□□ 1.56
RETREG1-201ENST00000306320 CCDC136Q96JN2 1154 aa24.77■■□□□ 1.56
RETREG1-201ENST00000306320 FAM9BQ8IZU0 186 aa24.76■■□□□ 1.55
RETREG1-201ENST00000306320 ZNF644Q9H582 1327 aaPredicted RBP24.76■■□□□ 1.55
RETREG1-201ENST00000306320 PPP1R15AO75807 674 aaPredicted RBP24.76■■□□□ 1.55
RETREG1-201ENST00000306320 FYCO1Q9BQS8 1478 aa24.74■■□□□ 1.55
RETREG1-201ENST00000306320 KIF21AQ7Z4S6 1674 aa24.73■■□□□ 1.55
RETREG1-201ENST00000306320 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
RETREG1-201ENST00000306320 NCOA2Q15596 1464 aa24.71■■□□□ 1.55
RETREG1-201ENST00000306320 LAMC3Q9Y6N6 1575 aa24.7■■□□□ 1.54
RETREG1-201ENST00000306320 SNAPC4Q5SXM2 1469 aa24.67■■□□□ 1.54
RETREG1-201ENST00000306320 RTL5Q5HYW3 569 aaPredicted RBP24.66■■□□□ 1.54
RETREG1-201ENST00000306320 CHMP7Q8WUX9 453 aaPredicted RBP24.66■■□□□ 1.54
RETREG1-201ENST00000306320 CCDC18Q5T9S5 1454 aa24.66■■□□□ 1.54
RETREG1-201ENST00000306320 POLR3GLQ9BT43 218 aa24.66■■□□□ 1.54
RETREG1-201ENST00000306320 FANCIQ9NVI1 1328 aa24.66■■□□□ 1.54
RETREG1-201ENST00000306320 CDK13Q14004 1512 aaKnown RBP24.66■■□□□ 1.54
RETREG1-201ENST00000306320 NPM2Q86SE8 214 aaKnown RBP24.65■■□□□ 1.54
RETREG1-201ENST00000306320 PAK3O75914 559 aaPredicted RBP24.65■■□□□ 1.54
RETREG1-201ENST00000306320 ZNF326Q5BKZ1 582 aaKnown RBP24.65■■□□□ 1.54
RETREG1-201ENST00000306320 MAP3K1Q13233 1512 aa24.65■■□□□ 1.54
RETREG1-201ENST00000306320 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.64■■□□□ 1.53
RETREG1-201ENST00000306320 CUL7Q14999 1698 aa24.62■■□□□ 1.53
RETREG1-201ENST00000306320 EFCAB5A4FU69 1503 aa24.62■■□□□ 1.53
RETREG1-201ENST00000306320 CFAP43Q8NDM7 1665 aa24.6■■□□□ 1.53
RETREG1-201ENST00000306320 CTTNBP2Q8WZ74 1663 aa24.6■■□□□ 1.53
RETREG1-201ENST00000306320 NOP58Q9Y2X3 529 aaKnown RBP24.6■■□□□ 1.53
RETREG1-201ENST00000306320 MYOM3Q5VTT5 1437 aa24.6■■□□□ 1.53
RETREG1-201ENST00000306320 CCER2I3L3R5 266 aa24.59■■□□□ 1.53
RETREG1-201ENST00000306320 SALL2Q9Y467 1007 aaPredicted RBP24.59■■□□□ 1.53
RETREG1-201ENST00000306320 MAGI3Q5TCQ9 1506 aa24.57■■□□□ 1.52
RETREG1-201ENST00000306320 ABCA5Q8WWZ7 1642 aa24.55■■□□□ 1.52
RETREG1-201ENST00000306320 NAIPQ13075 1403 aa24.55■■□□□ 1.52
RETREG1-201ENST00000306320 GRIN2BQ13224 1484 aa24.53■■□□□ 1.52
RETREG1-201ENST00000306320 PPP4R2Q9NY27 417 aa24.53■■□□□ 1.52
RETREG1-201ENST00000306320 ERCC6Q03468 1493 aa24.53■■□□□ 1.52
RETREG1-201ENST00000306320 MPHOSPH9Q99550 1183 aa24.52■■□□□ 1.52
RETREG1-201ENST00000306320 CCDC184Q52MB2 194 aa24.5■■□□□ 1.51
RETREG1-201ENST00000306320 IL27Q8NEV9 243 aa24.5■■□□□ 1.51
RETREG1-201ENST00000306320 LRRIQ1Q96JM4 1722 aa24.49■■□□□ 1.51
RETREG1-201ENST00000306320 HSPA5P11021 654 aaKnown RBP24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms