RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 DDX10Q13206 875 aaKnown RBP23.89■■□□□ 1.42
ZNF541-201ENST00000263351 CARMIL1Q5VZK9 1371 aa23.84■■□□□ 1.41
ZNF541-201ENST00000263351 WDR97A6NE52 1622 aa23.82■■□□□ 1.4
ZNF541-201ENST00000263351 TIAM1Q13009 1591 aa23.82■■□□□ 1.4
ZNF541-201ENST00000263351 FGD5Q6ZNL6 1462 aa23.8■■□□□ 1.4
ZNF541-201ENST00000263351 LRRC9Q6ZRR7 1453 aa23.77■■□□□ 1.4
ZNF541-201ENST00000263351 SETD5Q9C0A6 1442 aa23.77■■□□□ 1.4
ZNF541-201ENST00000263351 FHOD3Q2V2M9 1422 aa23.76■■□□□ 1.39
ZNF541-201ENST00000263351 TSHZ2Q9NRE2 1034 aa23.74■■□□□ 1.39
ZNF541-201ENST00000263351 PCF11O94913 1555 aaKnown RBP23.71■■□□□ 1.39
ZNF541-201ENST00000263351 RAD54L2Q9Y4B4 1467 aa23.7■■□□□ 1.38
ZNF541-201ENST00000263351 CADPSQ9ULU8 1353 aa23.68■■□□□ 1.38
ZNF541-201ENST00000263351 TRIM52Q96A61 297 aa23.68■■□□□ 1.38
ZNF541-201ENST00000263351 FKBP8Q14318 412 aa23.64■■□□□ 1.37
ZNF541-201ENST00000263351 PPP1R15AO75807 674 aaPredicted RBP23.6■■□□□ 1.37
ZNF541-201ENST00000263351 PRDM2Q13029 1718 aa23.55■■□□□ 1.36
ZNF541-201ENST00000263351 NESP48681 1621 aa23.55■■□□□ 1.36
ZNF541-201ENST00000263351 FANCD2Q9BXW9 1451 aa23.52■■□□□ 1.36
ZNF541-201ENST00000263351 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
ZNF541-201ENST00000263351 FHAD1B1AJZ9 1412 aa23.52■■□□□ 1.36
ZNF541-201ENST00000263351 PTPRKQ15262 1439 aa23.51■■□□□ 1.35
ZNF541-201ENST00000263351 CFAP43Q8NDM7 1665 aa23.51■■□□□ 1.35
ZNF541-201ENST00000263351 MYT1Q01538 1121 aa23.49■■□□□ 1.35
ZNF541-201ENST00000263351 POLA1P09884 1462 aaPredicted RBP23.45■■□□□ 1.34
ZNF541-201ENST00000263351 ARID3CA6NKF2 412 aa23.44■■□□□ 1.34
ZNF541-201ENST00000263351 CC2D2AQ9P2K1 1620 aa23.42■■□□□ 1.34
ZNF541-201ENST00000263351 CHIC2Q9UKJ5 165 aa23.42■■□□□ 1.34
ZNF541-201ENST00000263351 AQRO60306 1485 aaKnown RBP eCLIP23.41■■□□□ 1.34
ZNF541-201ENST00000263351 TDRD9Q8NDG6 1382 aaKnown RBP23.41■■□□□ 1.34
ZNF541-201ENST00000263351 FGD6Q6ZV73 1430 aa23.4■■□□□ 1.34
ZNF541-201ENST00000263351 TONSLQ96HA7 1378 aa23.4■■□□□ 1.34
ZNF541-201ENST00000263351 ANP32CO43423 234 aa23.4■■□□□ 1.34
ZNF541-201ENST00000263351 IRX6P78412 446 aaPredicted RBP23.39■■□□□ 1.34
ZNF541-201ENST00000263351 CASKIN1Q8WXD9 1431 aa23.39■■□□□ 1.33
ZNF541-201ENST00000263351 MTUS2Q5JR59 1369 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 CCDC18Q5T9S5 1454 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 TOPBP1Q92547 1522 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 RRP7BPQ9NSQ0 103 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 FYCO1Q9BQS8 1478 aa23.38■■□□□ 1.33
ZNF541-201ENST00000263351 ABCA10Q8WWZ4 1543 aa23.33■■□□□ 1.33
ZNF541-201ENST00000263351 LRRIQ1Q96JM4 1722 aa23.32■■□□□ 1.32
ZNF541-201ENST00000263351 SNAPC4Q5SXM2 1469 aa23.32■■□□□ 1.32
ZNF541-201ENST00000263351 FOXD1Q16676 465 aa23.31■■□□□ 1.32
ZNF541-201ENST00000263351 DNMBPQ6XZF7 1577 aa23.3■■□□□ 1.32
ZNF541-201ENST00000263351 NAIPQ13075 1403 aa23.26■■□□□ 1.31
ZNF541-201ENST00000263351 NCOA2Q15596 1464 aa23.26■■□□□ 1.31
ZNF541-201ENST00000263351 PTPN23Q9H3S7 1636 aa23.26■■□□□ 1.31
ZNF541-201ENST00000263351 CTTNBP2Q8WZ74 1663 aa23.25■■□□□ 1.31
ZNF541-201ENST00000263351 NEFLP07196 543 aa23.25■■□□□ 1.31
ZNF541-201ENST00000263351 CCDC184Q52MB2 194 aa23.25■■□□□ 1.31
ZNF541-201ENST00000263351 ANP32EQ9BTT0 268 aa23.25■■□□□ 1.31
ZNF541-201ENST00000263351 CCER2I3L3R5 266 aa23.24■■□□□ 1.31
ZNF541-201ENST00000263351 EFCAB5A4FU69 1503 aa23.24■■□□□ 1.31
ZNF541-201ENST00000263351 HNRNPUQ00839 825 aaKnown RBP eCLIP23.24■■□□□ 1.31
ZNF541-201ENST00000263351 TIMELESSQ9UNS1 1208 aa23.24■■□□□ 1.31
ZNF541-201ENST00000263351 HFM1A2PYH4 1435 aa23.23■■□□□ 1.31
ZNF541-201ENST00000263351 RBM19Q9Y4C8 960 aaKnown RBP23.23■■□□□ 1.31
ZNF541-201ENST00000263351 URB2Q14146 1524 aaKnown RBP23.22■■□□□ 1.31
ZNF541-201ENST00000263351 FMN1Q68DA7 1419 aa23.22■■□□□ 1.31
ZNF541-201ENST00000263351 UACAQ9BZF9 1416 aa23.22■■□□□ 1.31
ZNF541-201ENST00000263351 MAGI3Q5TCQ9 1506 aa23.21■■□□□ 1.31
ZNF541-201ENST00000263351 KDM5BQ9UGL1 1544 aa23.21■■□□□ 1.31
ZNF541-201ENST00000263351 HSPA5P11021 654 aaKnown RBP23.2■■□□□ 1.3
ZNF541-201ENST00000263351 WASHC2AQ641Q2 1341 aa23.19■■□□□ 1.3
ZNF541-201ENST00000263351 CNGB1Q14028 1251 aaPredicted RBP23.18■■□□□ 1.3
ZNF541-201ENST00000263351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.18■■□□□ 1.3
ZNF541-201ENST00000263351 MYOM3Q5VTT5 1437 aa23.17■■□□□ 1.3
ZNF541-201ENST00000263351 KDM6BO15054 1643 aa23.17■■□□□ 1.3
ZNF541-201ENST00000263351 DENND4BO75064 1496 aaPredicted RBP23.16■■□□□ 1.3
ZNF541-201ENST00000263351 C11orf95C9JLR9 678 aaPredicted RBP23.16■■□□□ 1.3
ZNF541-201ENST00000263351 CUL7Q14999 1698 aa23.15■■□□□ 1.3
ZNF541-201ENST00000263351 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
ZNF541-201ENST00000263351 SENP3-EIF4A1A0A087X0R7 540 aa23.13■■□□□ 1.29
ZNF541-201ENST00000263351 GAPVD1Q14C86 1478 aa23.1■■□□□ 1.29
ZNF541-201ENST00000263351 SAMD9Q5K651 1589 aa23.09■■□□□ 1.29
ZNF541-201ENST00000263351 L3MBTL2Q969R5 705 aa23.07■■□□□ 1.28
ZNF541-201ENST00000263351 MSH5O43196 834 aa23.06■■□□□ 1.28
ZNF541-201ENST00000263351 CDK13Q14004 1512 aaKnown RBP23.05■■□□□ 1.28
ZNF541-201ENST00000263351 FAM9BQ8IZU0 186 aa23.04■■□□□ 1.28
ZNF541-201ENST00000263351 SUPT6HQ7KZ85 1726 aaKnown RBP23.04■■□□□ 1.28
ZNF541-201ENST00000263351 ZNF644Q9H582 1327 aaPredicted RBP23.03■■□□□ 1.28
ZNF541-201ENST00000263351 MPHOSPH9Q99550 1183 aa23.02■■□□□ 1.28
ZNF541-201ENST00000263351 ABCA5Q8WWZ7 1642 aa23.02■■□□□ 1.28
ZNF541-201ENST00000263351 UGGT2Q9NYU1 1516 aa23.02■■□□□ 1.28
ZNF541-201ENST00000263351 NBPF8Q3BBV2 869 aa23.01■■□□□ 1.27
ZNF541-201ENST00000263351 EHBP1L1Q8N3D4 1523 aa22.99■■□□□ 1.27
ZNF541-201ENST00000263351 LAMC3Q9Y6N6 1575 aa22.99■■□□□ 1.27
ZNF541-201ENST00000263351 EIF4G2P78344 907 aaKnown RBP eCLIP22.97■■□□□ 1.27
ZNF541-201ENST00000263351 ARHGEF11O15085 1522 aa22.93■■□□□ 1.26
ZNF541-201ENST00000263351 POLR3GLQ9BT43 218 aa22.92■■□□□ 1.26
ZNF541-201ENST00000263351 THOC2Q8NI27 1593 aaKnown RBP22.92■■□□□ 1.26
ZNF541-201ENST00000263351 EPRSP07814 1512 aaKnown RBP22.91■■□□□ 1.26
ZNF541-201ENST00000263351 MRS2Q9HD23 443 aa22.9■■□□□ 1.26
ZNF541-201ENST00000263351 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
ZNF541-201ENST00000263351 B4GALNT3Q6L9W6 998 aa22.89■■□□□ 1.25
ZNF541-201ENST00000263351 PRKRIP1Q9H875 184 aaPredicted RBP22.89■■□□□ 1.25
ZNF541-201ENST00000263351 ZNF326Q5BKZ1 582 aaKnown RBP22.88■■□□□ 1.25
ZNF541-201ENST00000263351 CNTLNQ9NXG0 1405 aa22.87■■□□□ 1.25
ZNF541-201ENST00000263351 CCDC7Q96M83 1385 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms