RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 NISCHQ9Y2I1 1504 aa33.35■■■□□ 2.93
ZNF541-201ENST00000263351 SHROOM4Q9ULL8 1493 aa29.37■■■□□ 2.29
ZNF541-201ENST00000263351 SUPT5HO00267 1087 aaKnown RBP28.86■■■□□ 2.21
ZNF541-201ENST00000263351 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
ZNF541-201ENST00000263351 ZCCHC6Q5VYS8 1495 aaKnown RBP28.23■■■□□ 2.11
ZNF541-201ENST00000263351 MYO15BQ96JP2 1530 aa28.1■■■□□ 2.09
ZNF541-201ENST00000263351 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.06
ZNF541-201ENST00000263351 CCDC180Q9P1Z9 1646 aa27.88■■■□□ 2.05
ZNF541-201ENST00000263351 PCGF6Q9BYE7 350 aa27.61■■■□□ 2.01
ZNF541-201ENST00000263351 HRCP23327 699 aa27.55■■■□□ 2
ZNF541-201ENST00000263351 LOC105371045A0A1W2PR82 267 aa27.45■■□□□ 1.98
ZNF541-201ENST00000263351 PPARGC1BQ86YN6 1023 aaKnown RBP27.43■■□□□ 1.98
ZNF541-201ENST00000263351 DCAF1Q9Y4B6 1507 aa26.99■■□□□ 1.91
ZNF541-201ENST00000263351 EHMT2Q96KQ7 1210 aa26.87■■□□□ 1.89
ZNF541-201ENST00000263351 FAM9AQ8IZU1 332 aaPredicted RBP26.79■■□□□ 1.88
ZNF541-201ENST00000263351 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
ZNF541-201ENST00000263351 ABCC9O60706 1549 aa26.7■■□□□ 1.86
ZNF541-201ENST00000263351 RSF1Q96T23 1441 aaPredicted RBP26.66■■□□□ 1.86
ZNF541-201ENST00000263351 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.85
ZNF541-201ENST00000263351 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
ZNF541-201ENST00000263351 RB1CC1Q8TDY2 1594 aa26.54■■□□□ 1.84
ZNF541-201ENST00000263351 CECR2Q9BXF3 1484 aa26.33■■□□□ 1.81
ZNF541-201ENST00000263351 MROH2BQ7Z745 1585 aa26.15■■□□□ 1.78
ZNF541-201ENST00000263351 WIZO95785 1651 aa26.06■■□□□ 1.76
ZNF541-201ENST00000263351 TTBK1Q5TCY1 1321 aaPredicted RBP26.01■■□□□ 1.75
ZNF541-201ENST00000263351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.92■■□□□ 1.74
ZNF541-201ENST00000263351 ZEB1P37275 1124 aaPredicted RBP25.91■■□□□ 1.74
ZNF541-201ENST00000263351 SCAF1Q9H7N4 1312 aaKnown RBP25.79■■□□□ 1.72
ZNF541-201ENST00000263351 NACADO15069 1562 aa25.79■■□□□ 1.72
ZNF541-201ENST00000263351 ABCC8Q09428 1581 aa25.72■■□□□ 1.71
ZNF541-201ENST00000263351 CCER1Q8TC90 406 aaPredicted RBP25.66■■□□□ 1.7
ZNF541-201ENST00000263351 BAZ1AQ9NRL2 1556 aaPredicted RBP25.63■■□□□ 1.69
ZNF541-201ENST00000263351 CCDC88BA6NC98 1476 aa25.62■■□□□ 1.69
ZNF541-201ENST00000263351 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
ZNF541-201ENST00000263351 SOGA1O94964 1423 aa25.52■■□□□ 1.68
ZNF541-201ENST00000263351 RUSC2Q8N2Y8 1516 aa25.47■■□□□ 1.67
ZNF541-201ENST00000263351 CEP162Q5TB80 1403 aa25.39■■□□□ 1.66
ZNF541-201ENST00000263351 NEUROD1Q13562 356 aa25.39■■□□□ 1.65
ZNF541-201ENST00000263351 PABPN1Q86U42 306 aaKnown RBP eCLIP25.39■■□□□ 1.65
ZNF541-201ENST00000263351 TOP2AP11388 1531 aaKnown RBP25.36■■□□□ 1.65
ZNF541-201ENST00000263351 SMARCA2P51531 1590 aa25.36■■□□□ 1.65
ZNF541-201ENST00000263351 UBTFP17480 764 aaKnown RBP25.36■■□□□ 1.65
ZNF541-201ENST00000263351 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
ZNF541-201ENST00000263351 DIEXFQ68CQ4 756 aaKnown RBP25.28■■□□□ 1.64
ZNF541-201ENST00000263351 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
ZNF541-201ENST00000263351 CSRNP3Q8WYN3 585 aa25.23■■□□□ 1.63
ZNF541-201ENST00000263351 ACIN1Q9UKV3 1341 aaKnown RBP25.23■■□□□ 1.63
ZNF541-201ENST00000263351 RANGAP1P46060 587 aaPredicted RBP25.21■■□□□ 1.63
ZNF541-201ENST00000263351 WRNQ14191 1432 aaPredicted RBP eCLIP25.18■■□□□ 1.62
ZNF541-201ENST00000263351 TNIKQ9UKE5 1360 aa25.16■■□□□ 1.62
ZNF541-201ENST00000263351 HNRNPUL2Q1KMD3 747 aaKnown RBP25.13■■□□□ 1.61
ZNF541-201ENST00000263351 GTF3C3Q9Y5Q9 886 aa25.12■■□□□ 1.61
ZNF541-201ENST00000263351 YTHDC1Q96MU7 727 aaKnown RBP25.05■■□□□ 1.6
ZNF541-201ENST00000263351 GOLGA3Q08378 1498 aa24.97■■□□□ 1.59
ZNF541-201ENST00000263351 SYNJ1O43426 1573 aa24.95■■□□□ 1.58
ZNF541-201ENST00000263351 ZNF316A6NFI3 1004 aaPredicted RBP24.91■■□□□ 1.58
ZNF541-201ENST00000263351 PELP1Q8IZL8 1130 aaKnown RBP24.91■■□□□ 1.58
ZNF541-201ENST00000263351 BICRAQ9NZM4 1560 aa24.91■■□□□ 1.58
ZNF541-201ENST00000263351 EEA1Q15075 1411 aa24.87■■□□□ 1.57
ZNF541-201ENST00000263351 CENPBP07199 599 aaPredicted RBP24.85■■□□□ 1.57
ZNF541-201ENST00000263351 MIER1Q8N108 512 aa24.84■■□□□ 1.57
ZNF541-201ENST00000263351 CLIP1P30622 1438 aa24.83■■□□□ 1.56
ZNF541-201ENST00000263351 RAPGEF2Q9Y4G8 1499 aa24.81■■□□□ 1.56
ZNF541-201ENST00000263351 CEP164Q9UPV0 1460 aa24.75■■□□□ 1.55
ZNF541-201ENST00000263351 ATAD2BQ9ULI0 1458 aa24.67■■□□□ 1.54
ZNF541-201ENST00000263351 VPS8Q8N3P4 1428 aa24.66■■□□□ 1.54
ZNF541-201ENST00000263351 APLP2Q06481 763 aa24.65■■□□□ 1.54
ZNF541-201ENST00000263351 KIF21BO75037 1637 aa24.65■■□□□ 1.54
ZNF541-201ENST00000263351 BAZ1BQ9UIG0 1483 aaKnown RBP24.63■■□□□ 1.53
ZNF541-201ENST00000263351 PEG3Q9GZU2 1588 aa24.6■■□□□ 1.53
ZNF541-201ENST00000263351 KANK4Q5T7N3 995 aaPredicted RBP24.58■■□□□ 1.53
ZNF541-201ENST00000263351 ITGAEP38570 1179 aa24.46■■□□□ 1.51
ZNF541-201ENST00000263351 ARAP1Q96P48 1450 aa24.41■■□□□ 1.5
ZNF541-201ENST00000263351 DHX57Q6P158 1386 aaKnown RBP24.39■■□□□ 1.5
ZNF541-201ENST00000263351 TOP2BQ02880 1626 aa24.39■■□□□ 1.49
ZNF541-201ENST00000263351 PRXQ9BXM0 1461 aa24.3■■□□□ 1.48
ZNF541-201ENST00000263351 CUX1P39880 1505 aa24.27■■□□□ 1.48
ZNF541-201ENST00000263351 BIVM-ERCC5R4GMW8 1640 aa24.23■■□□□ 1.47
ZNF541-201ENST00000263351 KCNH8Q96L42 1107 aa24.21■■□□□ 1.47
ZNF541-201ENST00000263351 ERICH3Q5RHP9 1530 aa24.15■■□□□ 1.46
ZNF541-201ENST00000263351 ARHGAP35Q9NRY4 1499 aa24.14■■□□□ 1.45
ZNF541-201ENST00000263351 KIF27Q86VH2 1401 aa24.11■■□□□ 1.45
ZNF541-201ENST00000263351 P3H3Q8IVL6 736 aa24.1■■□□□ 1.45
ZNF541-201ENST00000263351 CCNB3Q8WWL7 1395 aa24.09■■□□□ 1.45
ZNF541-201ENST00000263351 RRBP1Q9P2E9 1410 aaKnown RBP24.08■■□□□ 1.45
ZNF541-201ENST00000263351 SUPT16HQ9Y5B9 1047 aaKnown RBP24.04■■□□□ 1.44
ZNF541-201ENST00000263351 ATP1B4Q9UN42 357 aaPredicted RBP24.03■■□□□ 1.44
ZNF541-201ENST00000263351 HIRIP3Q9BW71 556 aaPredicted RBP24.02■■□□□ 1.44
ZNF541-201ENST00000263351 SIN3AQ96ST3 1273 aa24.02■■□□□ 1.44
ZNF541-201ENST00000263351 RAB3GAP2Q9H2M9 1393 aa24.02■■□□□ 1.44
ZNF541-201ENST00000263351 CLSPNQ9HAW4 1339 aa24■■□□□ 1.43
ZNF541-201ENST00000263351 CUX2O14529 1486 aa23.99■■□□□ 1.43
ZNF541-201ENST00000263351 NCAPD3P42695 1498 aa23.98■■□□□ 1.43
ZNF541-201ENST00000263351 FAM50AQ14320 339 aaKnown RBP23.97■■□□□ 1.43
ZNF541-201ENST00000263351 CFTRP13569 1480 aa23.95■■□□□ 1.42
ZNF541-201ENST00000263351 IGF1RP08069 1367 aa23.95■■□□□ 1.42
ZNF541-201ENST00000263351 MAPKBP1O60336 1514 aa23.93■■□□□ 1.42
ZNF541-201ENST00000263351 PHLDB1Q86UU1 1377 aa23.92■■□□□ 1.42
ZNF541-201ENST00000263351 HMGXB3Q12766 1538 aa23.91■■□□□ 1.42
ZNF541-201ENST00000263351 BCANQ96GW7 911 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms