RNA–Protein interactions for RNA: ENST00000222402.7

UBE2D4-201, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE2D4, Length 3,974 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-201ENST00000222402 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
UBE2D4-201ENST00000222402 ARHGAP35Q9NRY4 1499 aa21.21■□□□□ 0.99
UBE2D4-201ENST00000222402 FANCD2Q9BXW9 1451 aa21.2■□□□□ 0.98
UBE2D4-201ENST00000222402 CHIC2Q9UKJ5 165 aa21.18■□□□□ 0.98
UBE2D4-201ENST00000222402 TONSLQ96HA7 1378 aa21.18■□□□□ 0.98
UBE2D4-201ENST00000222402 FHOD3Q2V2M9 1422 aa21.17■□□□□ 0.98
UBE2D4-201ENST00000222402 ANP32CO43423 234 aa21.17■□□□□ 0.98
UBE2D4-201ENST00000222402 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
UBE2D4-201ENST00000222402 TDRD9Q8NDG6 1382 aaKnown RBP21.16■□□□□ 0.98
UBE2D4-201ENST00000222402 SETD5Q9C0A6 1442 aa21.16■□□□□ 0.98
UBE2D4-201ENST00000222402 RAD54L2Q9Y4B4 1467 aa21.12■□□□□ 0.97
UBE2D4-201ENST00000222402 BCANQ96GW7 911 aa21.12■□□□□ 0.97
UBE2D4-201ENST00000222402 FBLN2P98095 1184 aa21.11■□□□□ 0.97
UBE2D4-201ENST00000222402 RRBP1Q9P2E9 1410 aaKnown RBP21.09■□□□□ 0.97
UBE2D4-201ENST00000222402 RRP7BPQ9NSQ0 103 aa21.08■□□□□ 0.97
UBE2D4-201ENST00000222402 CNGB1Q14028 1251 aaPredicted RBP21.06■□□□□ 0.96
UBE2D4-201ENST00000222402 POLR3GLQ9BT43 218 aa21.06■□□□□ 0.96
UBE2D4-201ENST00000222402 PHLDB1Q86UU1 1377 aa21.04■□□□□ 0.96
UBE2D4-201ENST00000222402 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
UBE2D4-201ENST00000222402 NESP48681 1621 aa21■□□□□ 0.95
UBE2D4-201ENST00000222402 LRRC9Q6ZRR7 1453 aa20.99■□□□□ 0.95
UBE2D4-201ENST00000222402 FMN1Q68DA7 1419 aa20.99■□□□□ 0.95
UBE2D4-201ENST00000222402 PDS5BQ9NTI5 1447 aa20.96■□□□□ 0.95
UBE2D4-201ENST00000222402 ZNF777Q9ULD5 760 aaPredicted RBP20.95■□□□□ 0.95
UBE2D4-201ENST00000222402 CDK11AQ9UQ88 783 aaPredicted RBP20.93■□□□□ 0.94
UBE2D4-201ENST00000222402 ZNF326Q5BKZ1 582 aaKnown RBP20.92■□□□□ 0.94
UBE2D4-201ENST00000222402 POLA1P09884 1462 aaPredicted RBP20.91■□□□□ 0.94
UBE2D4-201ENST00000222402 FKBP8Q14318 412 aa20.9■□□□□ 0.94
UBE2D4-201ENST00000222402 TIAM1Q13009 1591 aa20.9■□□□□ 0.94
UBE2D4-201ENST00000222402 TIMELESSQ9UNS1 1208 aa20.9■□□□□ 0.94
UBE2D4-201ENST00000222402 TOPBP1Q92547 1522 aa20.89■□□□□ 0.93
UBE2D4-201ENST00000222402 PPP1R15AO75807 674 aaPredicted RBP20.87■□□□□ 0.93
UBE2D4-201ENST00000222402 KCNH8Q96L42 1107 aa20.87■□□□□ 0.93
UBE2D4-201ENST00000222402 SUPT16HQ9Y5B9 1047 aaKnown RBP20.84■□□□□ 0.93
UBE2D4-201ENST00000222402 GAPVD1Q14C86 1478 aa20.83■□□□□ 0.93
UBE2D4-201ENST00000222402 CHMP7Q8WUX9 453 aaPredicted RBP20.82■□□□□ 0.92
UBE2D4-201ENST00000222402 CASKIN1Q8WXD9 1431 aa20.82■□□□□ 0.92
UBE2D4-201ENST00000222402 DNMBPQ6XZF7 1577 aa20.8■□□□□ 0.92
UBE2D4-201ENST00000222402 HNRNPUQ00839 825 aaKnown RBP eCLIP20.8■□□□□ 0.92
UBE2D4-201ENST00000222402 MYT1Q01538 1121 aa20.8■□□□□ 0.92
UBE2D4-201ENST00000222402 FGD6Q6ZV73 1430 aa20.78■□□□□ 0.92
UBE2D4-201ENST00000222402 DNAJC5BQ9UF47 199 aa20.78■□□□□ 0.92
UBE2D4-201ENST00000222402 ABCA10Q8WWZ4 1543 aa20.78■□□□□ 0.92
UBE2D4-201ENST00000222402 FYCO1Q9BQS8 1478 aa20.77■□□□□ 0.92
UBE2D4-201ENST00000222402 SLC4A1APQ9BWU0 796 aaKnown RBP20.77■□□□□ 0.92
UBE2D4-201ENST00000222402 EIF4G2P78344 907 aaKnown RBP eCLIP20.77■□□□□ 0.91
UBE2D4-201ENST00000222402 PCF11O94913 1555 aaKnown RBP20.75■□□□□ 0.91
UBE2D4-201ENST00000222402 FOXD1Q16676 465 aa20.73■□□□□ 0.91
UBE2D4-201ENST00000222402 CCDC18Q5T9S5 1454 aa20.73■□□□□ 0.91
UBE2D4-201ENST00000222402 EFCAB5A4FU69 1503 aa20.71■□□□□ 0.91
UBE2D4-201ENST00000222402 MAP3K1Q13233 1512 aa20.71■□□□□ 0.91
UBE2D4-201ENST00000222402 CFDP1Q9UEE9 299 aaPredicted RBP20.69■□□□□ 0.9
UBE2D4-201ENST00000222402 FAM9BQ8IZU0 186 aa20.68■□□□□ 0.9
UBE2D4-201ENST00000222402 MYOM3Q5VTT5 1437 aa20.66■□□□□ 0.9
UBE2D4-201ENST00000222402 AQRO60306 1485 aaKnown RBP eCLIP20.66■□□□□ 0.9
UBE2D4-201ENST00000222402 NCOA2Q15596 1464 aa20.66■□□□□ 0.9
UBE2D4-201ENST00000222402 MPHOSPH9Q99550 1183 aa20.65■□□□□ 0.9
UBE2D4-201ENST00000222402 ERICH6Q7L0X2 663 aa20.64■□□□□ 0.9
UBE2D4-201ENST00000222402 HSPA5P11021 654 aaKnown RBP20.64■□□□□ 0.89
UBE2D4-201ENST00000222402 CCER2I3L3R5 266 aa20.63■□□□□ 0.89
UBE2D4-201ENST00000222402 URB2Q14146 1524 aaKnown RBP20.62■□□□□ 0.89
UBE2D4-201ENST00000222402 WDR97A6NE52 1622 aa20.62■□□□□ 0.89
UBE2D4-201ENST00000222402 MRS2Q9HD23 443 aa20.6■□□□□ 0.89
UBE2D4-201ENST00000222402 UACAQ9BZF9 1416 aa20.6■□□□□ 0.89
UBE2D4-201ENST00000222402 IRX6P78412 446 aaPredicted RBP20.6■□□□□ 0.89
UBE2D4-201ENST00000222402 ERCC6Q03468 1493 aa20.6■□□□□ 0.89
UBE2D4-201ENST00000222402 PLEKHD1A6NEE1 506 aa20.59■□□□□ 0.89
UBE2D4-201ENST00000222402 TSPY4P0CV99 314 aa20.58■□□□□ 0.89
UBE2D4-201ENST00000222402 TSPY10P0CW01 314 aa20.58■□□□□ 0.89
UBE2D4-201ENST00000222402 MAPKBP1O60336 1514 aa20.58■□□□□ 0.88
UBE2D4-201ENST00000222402 CUL7Q14999 1698 aa20.58■□□□□ 0.88
UBE2D4-201ENST00000222402 L3MBTL2Q969R5 705 aa20.57■□□□□ 0.88
UBE2D4-201ENST00000222402 MYT1LQ9UL68 1186 aa20.56■□□□□ 0.88
UBE2D4-201ENST00000222402 LAMC3Q9Y6N6 1575 aa20.56■□□□□ 0.88
UBE2D4-201ENST00000222402 PRDM2Q13029 1718 aa20.55■□□□□ 0.88
UBE2D4-201ENST00000222402 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.55■□□□□ 0.88
UBE2D4-201ENST00000222402 KDM2AQ9Y2K7 1162 aa20.55■□□□□ 0.88
UBE2D4-201ENST00000222402 HFM1A2PYH4 1435 aa20.53■□□□□ 0.88
UBE2D4-201ENST00000222402 ZNF644Q9H582 1327 aaPredicted RBP20.5■□□□□ 0.87
UBE2D4-201ENST00000222402 NAIPQ13075 1403 aa20.48■□□□□ 0.87
UBE2D4-201ENST00000222402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.47■□□□□ 0.87
UBE2D4-201ENST00000222402 EHBP1L1Q8N3D4 1523 aa20.46■□□□□ 0.87
UBE2D4-201ENST00000222402 GRIN2BQ13224 1484 aa20.44■□□□□ 0.86
UBE2D4-201ENST00000222402 PTPRKQ15262 1439 aa20.44■□□□□ 0.86
UBE2D4-201ENST00000222402 PKD2Q13563 968 aa20.43■□□□□ 0.86
UBE2D4-201ENST00000222402 SENP3-EIF4A1A0A087X0R7 540 aa20.43■□□□□ 0.86
UBE2D4-201ENST00000222402 CFAP43Q8NDM7 1665 aa20.42■□□□□ 0.86
UBE2D4-201ENST00000222402 JPH4Q96JJ6 628 aa20.41■□□□□ 0.86
UBE2D4-201ENST00000222402 SUPT6HQ7KZ85 1726 aaKnown RBP20.41■□□□□ 0.86
UBE2D4-201ENST00000222402 TSHZ2Q9NRE2 1034 aa20.4■□□□□ 0.86
UBE2D4-201ENST00000222402 CDK13Q14004 1512 aaKnown RBP20.4■□□□□ 0.86
UBE2D4-201ENST00000222402 CARMIL2Q6F5E8 1435 aa20.39■□□□□ 0.85
UBE2D4-201ENST00000222402 SNAPC4Q5SXM2 1469 aa20.39■□□□□ 0.85
UBE2D4-201ENST00000222402 CTTNBP2Q8WZ74 1663 aa20.38■□□□□ 0.85
UBE2D4-201ENST00000222402 TMC1Q8TDI8 760 aa20.38■□□□□ 0.85
UBE2D4-201ENST00000222402 MRC2Q9UBG0 1479 aa20.38■□□□□ 0.85
UBE2D4-201ENST00000222402 EPRSP07814 1512 aaKnown RBP20.37■□□□□ 0.85
UBE2D4-201ENST00000222402 CARD11Q9BXL7 1154 aa20.37■□□□□ 0.85
UBE2D4-201ENST00000222402 RGL3Q3MIN7 710 aa20.36■□□□□ 0.85
UBE2D4-201ENST00000222402 WASHC2AQ641Q2 1341 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms