RNA–Protein interactions for RNA: ENST00000221996.11

CRX-201, Transcript of cone-rod homeobox, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CRX, Length 4,470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRX-201ENST00000221996 CHMP7Q8WUX9 453 aaPredicted RBP13.7□□□□□ -0.22
CRX-201ENST00000221996 UNC13AQ9UPW8 1703 aa13.69□□□□□ -0.22
CRX-201ENST00000221996 ERICH6Q7L0X2 663 aa13.67□□□□□ -0.22
CRX-201ENST00000221996 IGF1RP08069 1367 aa13.66□□□□□ -0.22
CRX-201ENST00000221996 KIF21BO75037 1637 aa13.66□□□□□ -0.22
CRX-201ENST00000221996 FANCD2Q9BXW9 1451 aa13.65□□□□□ -0.22
CRX-201ENST00000221996 CFTRP13569 1480 aa13.63□□□□□ -0.23
CRX-201ENST00000221996 PDS5BQ9NTI5 1447 aa13.63□□□□□ -0.23
CRX-201ENST00000221996 FHOD3Q2V2M9 1422 aa13.63□□□□□ -0.23
CRX-201ENST00000221996 FGD5Q6ZNL6 1462 aa13.62□□□□□ -0.23
CRX-201ENST00000221996 RAB3GAP2Q9H2M9 1393 aa13.62□□□□□ -0.23
CRX-201ENST00000221996 SETD5Q9C0A6 1442 aa13.61□□□□□ -0.23
CRX-201ENST00000221996 TOP2BQ02880 1626 aa13.6□□□□□ -0.23
CRX-201ENST00000221996 PEG3Q9GZU2 1588 aa13.6□□□□□ -0.23
CRX-201ENST00000221996 ARHGAP35Q9NRY4 1499 aa13.59□□□□□ -0.23
CRX-201ENST00000221996 HMGXB3Q12766 1538 aa13.59□□□□□ -0.23
CRX-201ENST00000221996 DHX57Q6P158 1386 aaKnown RBP13.58□□□□□ -0.24
CRX-201ENST00000221996 CUX1P39880 1505 aa13.57□□□□□ -0.24
CRX-201ENST00000221996 PRXQ9BXM0 1461 aa13.57□□□□□ -0.24
CRX-201ENST00000221996 FMN1Q68DA7 1419 aa13.56□□□□□ -0.24
CRX-201ENST00000221996 RAD54L2Q9Y4B4 1467 aa13.56□□□□□ -0.24
CRX-201ENST00000221996 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
CRX-201ENST00000221996 ARAP1Q96P48 1450 aa13.56□□□□□ -0.24
CRX-201ENST00000221996 ERICH3Q5RHP9 1530 aa13.55□□□□□ -0.24
CRX-201ENST00000221996 FKBP8Q14318 412 aa13.53□□□□□ -0.24
CRX-201ENST00000221996 TSPY4P0CV99 314 aa13.53□□□□□ -0.24
CRX-201ENST00000221996 TSPY10P0CW01 314 aa13.53□□□□□ -0.24
CRX-201ENST00000221996 HNRNPUQ00839 825 aaKnown RBP eCLIP13.53□□□□□ -0.24
CRX-201ENST00000221996 CFDP1Q9UEE9 299 aaPredicted RBP13.53□□□□□ -0.24
CRX-201ENST00000221996 ERCC6Q03468 1493 aa13.52□□□□□ -0.25
CRX-201ENST00000221996 PLEKHD1A6NEE1 506 aa13.51□□□□□ -0.25
CRX-201ENST00000221996 EIF4G2P78344 907 aaKnown RBP eCLIP13.51□□□□□ -0.25
CRX-201ENST00000221996 TIMELESSQ9UNS1 1208 aa13.49□□□□□ -0.25
CRX-201ENST00000221996 MYT1Q01538 1121 aa13.48□□□□□ -0.25
CRX-201ENST00000221996 FAM9BQ8IZU0 186 aa13.48□□□□□ -0.25
CRX-201ENST00000221996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.47□□□□□ -0.25
CRX-201ENST00000221996 KDM2AQ9Y2K7 1162 aa13.46□□□□□ -0.25
CRX-201ENST00000221996 NESP48681 1621 aa13.46□□□□□ -0.25
CRX-201ENST00000221996 CC2D2AQ9P2K1 1620 aa13.44□□□□□ -0.26
CRX-201ENST00000221996 PHLDB1Q86UU1 1377 aa13.44□□□□□ -0.26
CRX-201ENST00000221996 GAPVD1Q14C86 1478 aa13.43□□□□□ -0.26
CRX-201ENST00000221996 PPP1R15AO75807 674 aaPredicted RBP13.42□□□□□ -0.26
CRX-201ENST00000221996 MRS2Q9HD23 443 aa13.42□□□□□ -0.26
CRX-201ENST00000221996 FOXD1Q16676 465 aa13.41□□□□□ -0.26
CRX-201ENST00000221996 KCNH8Q96L42 1107 aa13.41□□□□□ -0.26
CRX-201ENST00000221996 LRRC9Q6ZRR7 1453 aa13.41□□□□□ -0.26
CRX-201ENST00000221996 RRBP1Q9P2E9 1410 aaKnown RBP13.4□□□□□ -0.26
CRX-201ENST00000221996 POLA1P09884 1462 aaPredicted RBP13.37□□□□□ -0.27
CRX-201ENST00000221996 TOPBP1Q92547 1522 aa13.37□□□□□ -0.27
CRX-201ENST00000221996 MPHOSPH9Q99550 1183 aa13.36□□□□□ -0.27
CRX-201ENST00000221996 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
CRX-201ENST00000221996 IRX6P78412 446 aaPredicted RBP13.34□□□□□ -0.27
CRX-201ENST00000221996 RGL3Q3MIN7 710 aa13.33□□□□□ -0.27
CRX-201ENST00000221996 TMC1Q8TDI8 760 aa13.33□□□□□ -0.27
CRX-201ENST00000221996 HSPA5P11021 654 aaKnown RBP13.33□□□□□ -0.28
CRX-201ENST00000221996 CASKIN1Q8WXD9 1431 aa13.33□□□□□ -0.28
CRX-201ENST00000221996 AQRO60306 1485 aaKnown RBP eCLIP13.32□□□□□ -0.28
CRX-201ENST00000221996 DNAJC5BQ9UF47 199 aa13.32□□□□□ -0.28
CRX-201ENST00000221996 FGD6Q6ZV73 1430 aa13.32□□□□□ -0.28
CRX-201ENST00000221996 SUPT16HQ9Y5B9 1047 aaKnown RBP13.31□□□□□ -0.28
CRX-201ENST00000221996 CARMIL2Q6F5E8 1435 aa13.31□□□□□ -0.28
CRX-201ENST00000221996 SALL2Q9Y467 1007 aaPredicted RBP13.3□□□□□ -0.28
CRX-201ENST00000221996 DNMBPQ6XZF7 1577 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 CCDC18Q5T9S5 1454 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 JPH4Q96JJ6 628 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 TIAM1Q13009 1591 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 L3MBTL2Q969R5 705 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 CARD11Q9BXL7 1154 aa13.29□□□□□ -0.28
CRX-201ENST00000221996 CCER2I3L3R5 266 aa13.28□□□□□ -0.28
CRX-201ENST00000221996 FYCO1Q9BQS8 1478 aa13.28□□□□□ -0.28
CRX-201ENST00000221996 PKD2Q13563 968 aa13.28□□□□□ -0.28
CRX-201ENST00000221996 CHGAP10645 457 aaKnown RBP13.27□□□□□ -0.28
CRX-201ENST00000221996 MYOM3Q5VTT5 1437 aa13.27□□□□□ -0.29
CRX-201ENST00000221996 SENP3-EIF4A1A0A087X0R7 540 aa13.27□□□□□ -0.29
CRX-201ENST00000221996 NPM1P06748 294 aaKnown RBP eCLIP13.27□□□□□ -0.29
CRX-201ENST00000221996 ABCA10Q8WWZ4 1543 aa13.26□□□□□ -0.29
CRX-201ENST00000221996 NCOA2Q15596 1464 aa13.24□□□□□ -0.29
CRX-201ENST00000221996 EFCAB5A4FU69 1503 aa13.24□□□□□ -0.29
CRX-201ENST00000221996 DCAF11Q8TEB1 546 aa13.23□□□□□ -0.29
CRX-201ENST00000221996 ZNF644Q9H582 1327 aaPredicted RBP13.21□□□□□ -0.29
CRX-201ENST00000221996 NUP155O75694 1391 aa13.2□□□□□ -0.3
CRX-201ENST00000221996 ANKRD30AQ9BXX3 1397 aa13.2□□□□□ -0.3
CRX-201ENST00000221996 DAXXQ9UER7 740 aaPredicted RBP13.2□□□□□ -0.3
CRX-201ENST00000221996 UACAQ9BZF9 1416 aa13.2□□□□□ -0.3
CRX-201ENST00000221996 HNRNPMP52272 730 aaKnown RBP eCLIP13.19□□□□□ -0.3
CRX-201ENST00000221996 GRIN2BQ13224 1484 aa13.19□□□□□ -0.3
CRX-201ENST00000221996 PCF11O94913 1555 aaKnown RBP13.18□□□□□ -0.3
CRX-201ENST00000221996 LAMC3Q9Y6N6 1575 aa13.16□□□□□ -0.3
CRX-201ENST00000221996 URB2Q14146 1524 aaKnown RBP13.16□□□□□ -0.3
CRX-201ENST00000221996 CCDC136Q96JN2 1154 aa13.15□□□□□ -0.3
CRX-201ENST00000221996 MRC2Q9UBG0 1479 aa13.15□□□□□ -0.3
CRX-201ENST00000221996 MAP3K1Q13233 1512 aa13.14□□□□□ -0.31
CRX-201ENST00000221996 HFM1A2PYH4 1435 aa13.11□□□□□ -0.31
CRX-201ENST00000221996 CUL7Q14999 1698 aa13.11□□□□□ -0.31
CRX-201ENST00000221996 WDR43Q15061 677 aaKnown RBP eCLIP13.11□□□□□ -0.31
CRX-201ENST00000221996 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.1□□□□□ -0.31
CRX-201ENST00000221996 PRDM2Q13029 1718 aa13.1□□□□□ -0.31
CRX-201ENST00000221996 PTPRGP23470 1445 aa13.1□□□□□ -0.31
CRX-201ENST00000221996 EHBP1L1Q8N3D4 1523 aa13.1□□□□□ -0.31
CRX-201ENST00000221996 CANXP27824 592 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms