RNA–Protein interactions for RNA: ENST00000221996.11

CRX-201, Transcript of cone-rod homeobox, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CRX, Length 4,470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRX-201ENST00000221996 NISCHQ9Y2I1 1504 aa18.77■□□□□ 0.59
CRX-201ENST00000221996 DCAF8L2P0C7V8 631 aa17.29■□□□□ 0.36
CRX-201ENST00000221996 SHROOM4Q9ULL8 1493 aa16.95■□□□□ 0.3
CRX-201ENST00000221996 SUPT5HO00267 1087 aaKnown RBP16.86■□□□□ 0.29
CRX-201ENST00000221996 EHMT2Q96KQ7 1210 aa15.86■□□□□ 0.13
CRX-201ENST00000221996 FAM9AQ8IZU1 332 aaPredicted RBP15.74■□□□□ 0.11
CRX-201ENST00000221996 CHIC1Q5VXU3 224 aa15.71■□□□□ 0.11
CRX-201ENST00000221996 ZCCHC6Q5VYS8 1495 aaKnown RBP15.7■□□□□ 0.1
CRX-201ENST00000221996 PCGF6Q9BYE7 350 aa15.68■□□□□ 0.1
CRX-201ENST00000221996 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
CRX-201ENST00000221996 CCDC180Q9P1Z9 1646 aa15.62■□□□□ 0.09
CRX-201ENST00000221996 ABCC9O60706 1549 aa15.49■□□□□ 0.07
CRX-201ENST00000221996 LOC105371045A0A1W2PR82 267 aa15.47■□□□□ 0.07
CRX-201ENST00000221996 TTBK1Q5TCY1 1321 aaPredicted RBP15.3■□□□□ 0.04
CRX-201ENST00000221996 HRCP23327 699 aa15.21■□□□□ 0.03
CRX-201ENST00000221996 SCRIBQ14160 1630 aa15.21■□□□□ 0.03
CRX-201ENST00000221996 TRIM26Q12899 539 aaPredicted RBP15.19■□□□□ 0.02
CRX-201ENST00000221996 PPARGC1BQ86YN6 1023 aaKnown RBP15.18■□□□□ 0.02
CRX-201ENST00000221996 UBTFP17480 764 aaKnown RBP15.16■□□□□ 0.02
CRX-201ENST00000221996 APLP2Q06481 763 aa15.15■□□□□ 0.02
CRX-201ENST00000221996 RANGAP1P46060 587 aaPredicted RBP15.13■□□□□ 0.01
CRX-201ENST00000221996 PABPN1Q86U42 306 aaKnown RBP eCLIP15.12■□□□□ 0.01
CRX-201ENST00000221996 ZEB1P37275 1124 aaPredicted RBP15.08■□□□□ 0.01
CRX-201ENST00000221996 DCAF1Q9Y4B6 1507 aa15.07■□□□□ 0
CRX-201ENST00000221996 MYO15BQ96JP2 1530 aa15.03■□□□□ -0
CRX-201ENST00000221996 CCER1Q8TC90 406 aaPredicted RBP15.03■□□□□ -0
CRX-201ENST00000221996 RSF1Q96T23 1441 aaPredicted RBP14.96□□□□□ -0.01
CRX-201ENST00000221996 NACADO15069 1562 aa14.84□□□□□ -0.03
CRX-201ENST00000221996 RB1CC1Q8TDY2 1594 aa14.77□□□□□ -0.05
CRX-201ENST00000221996 CECR2Q9BXF3 1484 aa14.75□□□□□ -0.05
CRX-201ENST00000221996 ATP1B4Q9UN42 357 aaPredicted RBP14.74□□□□□ -0.05
CRX-201ENST00000221996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.74□□□□□ -0.05
CRX-201ENST00000221996 HNRNPUL2Q1KMD3 747 aaKnown RBP14.68□□□□□ -0.06
CRX-201ENST00000221996 CSRNP3Q8WYN3 585 aa14.68□□□□□ -0.06
CRX-201ENST00000221996 MROH2BQ7Z745 1585 aa14.6□□□□□ -0.07
CRX-201ENST00000221996 CENPBP07199 599 aaPredicted RBP14.58□□□□□ -0.08
CRX-201ENST00000221996 BAZ1AQ9NRL2 1556 aaPredicted RBP14.55□□□□□ -0.08
CRX-201ENST00000221996 ITGAEP38570 1179 aa14.55□□□□□ -0.08
CRX-201ENST00000221996 YTHDC1Q96MU7 727 aaKnown RBP14.48□□□□□ -0.09
CRX-201ENST00000221996 WIZO95785 1651 aa14.43□□□□□ -0.1
CRX-201ENST00000221996 DIEXFQ68CQ4 756 aaKnown RBP14.41□□□□□ -0.1
CRX-201ENST00000221996 WRNQ14191 1432 aaPredicted RBP eCLIP14.37□□□□□ -0.11
CRX-201ENST00000221996 CCDC88BA6NC98 1476 aa14.37□□□□□ -0.11
CRX-201ENST00000221996 BAZ1BQ9UIG0 1483 aaKnown RBP14.35□□□□□ -0.11
CRX-201ENST00000221996 CEP162Q5TB80 1403 aa14.35□□□□□ -0.11
CRX-201ENST00000221996 EEA1Q15075 1411 aa14.33□□□□□ -0.11
CRX-201ENST00000221996 ABCC8Q09428 1581 aa14.31□□□□□ -0.12
CRX-201ENST00000221996 SOGA1O94964 1423 aa14.31□□□□□ -0.12
CRX-201ENST00000221996 PELP1Q8IZL8 1130 aaKnown RBP14.3□□□□□ -0.12
CRX-201ENST00000221996 FAM50AQ14320 339 aaKnown RBP14.29□□□□□ -0.12
CRX-201ENST00000221996 TNIKQ9UKE5 1360 aa14.28□□□□□ -0.12
CRX-201ENST00000221996 GOLGA3Q08378 1498 aa14.28□□□□□ -0.12
CRX-201ENST00000221996 P3H3Q8IVL6 736 aa14.27□□□□□ -0.12
CRX-201ENST00000221996 CLIP1P30622 1438 aa14.27□□□□□ -0.12
CRX-201ENST00000221996 TOP2AP11388 1531 aaKnown RBP14.27□□□□□ -0.13
CRX-201ENST00000221996 ZNF316A6NFI3 1004 aaPredicted RBP14.22□□□□□ -0.13
CRX-201ENST00000221996 SMARCA4P51532 1647 aa14.21□□□□□ -0.13
CRX-201ENST00000221996 CEP164Q9UPV0 1460 aa14.18□□□□□ -0.14
CRX-201ENST00000221996 NEUROD1Q13562 356 aa14.13□□□□□ -0.15
CRX-201ENST00000221996 SMARCA2P51531 1590 aa14.1□□□□□ -0.15
CRX-201ENST00000221996 ATAD2BQ9ULI0 1458 aa14.09□□□□□ -0.15
CRX-201ENST00000221996 KIF27Q86VH2 1401 aa14.08□□□□□ -0.16
CRX-201ENST00000221996 RUSC2Q8N2Y8 1516 aa14.07□□□□□ -0.16
CRX-201ENST00000221996 GTF3C3Q9Y5Q9 886 aa14.05□□□□□ -0.16
CRX-201ENST00000221996 ACIN1Q9UKV3 1341 aaKnown RBP14.03□□□□□ -0.16
CRX-201ENST00000221996 ARID3CA6NKF2 412 aa14.03□□□□□ -0.16
CRX-201ENST00000221996 TRIM52Q96A61 297 aa14.01□□□□□ -0.17
CRX-201ENST00000221996 NEFLP07196 543 aa14□□□□□ -0.17
CRX-201ENST00000221996 FBLN2P98095 1184 aa13.98□□□□□ -0.17
CRX-201ENST00000221996 VPS8Q8N3P4 1428 aa13.97□□□□□ -0.17
CRX-201ENST00000221996 POLR3GLQ9BT43 218 aa13.93□□□□□ -0.18
CRX-201ENST00000221996 CUX2O14529 1486 aa13.93□□□□□ -0.18
CRX-201ENST00000221996 RAPGEF2Q9Y4G8 1499 aa13.92□□□□□ -0.18
CRX-201ENST00000221996 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
CRX-201ENST00000221996 CNGB1Q14028 1251 aaPredicted RBP13.89□□□□□ -0.19
CRX-201ENST00000221996 KANK4Q5T7N3 995 aaPredicted RBP13.88□□□□□ -0.19
CRX-201ENST00000221996 MIER1Q8N108 512 aa13.88□□□□□ -0.19
CRX-201ENST00000221996 SCAF1Q9H7N4 1312 aaKnown RBP13.88□□□□□ -0.19
CRX-201ENST00000221996 MTUS2Q5JR59 1369 aa13.87□□□□□ -0.19
CRX-201ENST00000221996 CADPSQ9ULU8 1353 aa13.83□□□□□ -0.2
CRX-201ENST00000221996 CHIC2Q9UKJ5 165 aa13.82□□□□□ -0.2
CRX-201ENST00000221996 ANP32CO43423 234 aa13.82□□□□□ -0.2
CRX-201ENST00000221996 CCNB3Q8WWL7 1395 aa13.81□□□□□ -0.2
CRX-201ENST00000221996 BICRAQ9NZM4 1560 aa13.8□□□□□ -0.2
CRX-201ENST00000221996 TONSLQ96HA7 1378 aa13.79□□□□□ -0.2
CRX-201ENST00000221996 ZNF777Q9ULD5 760 aaPredicted RBP13.79□□□□□ -0.2
CRX-201ENST00000221996 DDX10Q13206 875 aaKnown RBP13.79□□□□□ -0.2
CRX-201ENST00000221996 CDK11AQ9UQ88 783 aaPredicted RBP13.79□□□□□ -0.2
CRX-201ENST00000221996 MYT1LQ9UL68 1186 aa13.78□□□□□ -0.2
CRX-201ENST00000221996 SYNJ1O43426 1573 aa13.77□□□□□ -0.2
CRX-201ENST00000221996 ZNF326Q5BKZ1 582 aaKnown RBP13.77□□□□□ -0.21
CRX-201ENST00000221996 NCAPD3P42695 1498 aa13.77□□□□□ -0.21
CRX-201ENST00000221996 FHAD1B1AJZ9 1412 aa13.75□□□□□ -0.21
CRX-201ENST00000221996 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
CRX-201ENST00000221996 EIF4G1Q04637 1599 aaKnown RBP13.74□□□□□ -0.21
CRX-201ENST00000221996 HIRIP3Q9BW71 556 aaPredicted RBP13.74□□□□□ -0.21
CRX-201ENST00000221996 BCANQ96GW7 911 aa13.72□□□□□ -0.21
CRX-201ENST00000221996 RRP7BPQ9NSQ0 103 aa13.72□□□□□ -0.21
CRX-201ENST00000221996 TDRD9Q8NDG6 1382 aaKnown RBP13.71□□□□□ -0.22
CRX-201ENST00000221996 SIN3AQ96ST3 1273 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms