RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 CFTRP13569 1480 aa20.13■□□□□ 0.81
USH1C-201ENST00000005226 PHLDB1Q86UU1 1377 aa20.11■□□□□ 0.81
USH1C-201ENST00000005226 SETD5Q9C0A6 1442 aa20.09■□□□□ 0.81
USH1C-201ENST00000005226 HMGXB3Q12766 1538 aa20.08■□□□□ 0.8
USH1C-201ENST00000005226 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
USH1C-201ENST00000005226 WDR97A6NE52 1622 aa20.06■□□□□ 0.8
USH1C-201ENST00000005226 TIAM1Q13009 1591 aa20.05■□□□□ 0.8
USH1C-201ENST00000005226 FKBP8Q14318 412 aa20.03■□□□□ 0.8
USH1C-201ENST00000005226 LRRC9Q6ZRR7 1453 aa20.03■□□□□ 0.8
USH1C-201ENST00000005226 PPP1R15AO75807 674 aaPredicted RBP19.98■□□□□ 0.79
USH1C-201ENST00000005226 TRIM52Q96A61 297 aa19.98■□□□□ 0.79
USH1C-201ENST00000005226 FGD5Q6ZNL6 1462 aa19.96■□□□□ 0.79
USH1C-201ENST00000005226 FHOD3Q2V2M9 1422 aa19.93■□□□□ 0.78
USH1C-201ENST00000005226 MAP3K1Q13233 1512 aa19.9■□□□□ 0.78
USH1C-201ENST00000005226 CADPSQ9ULU8 1353 aa19.9■□□□□ 0.78
USH1C-201ENST00000005226 PCF11O94913 1555 aaKnown RBP19.89■□□□□ 0.77
USH1C-201ENST00000005226 FHAD1B1AJZ9 1412 aa19.86■□□□□ 0.77
USH1C-201ENST00000005226 ANP32CO43423 234 aa19.85■□□□□ 0.77
USH1C-201ENST00000005226 RAD54L2Q9Y4B4 1467 aa19.84■□□□□ 0.77
USH1C-201ENST00000005226 ANP32EQ9BTT0 268 aa19.82■□□□□ 0.76
USH1C-201ENST00000005226 NEFLP07196 543 aa19.8■□□□□ 0.76
USH1C-201ENST00000005226 TIMELESSQ9UNS1 1208 aa19.79■□□□□ 0.76
USH1C-201ENST00000005226 TONSLQ96HA7 1378 aa19.78■□□□□ 0.76
USH1C-201ENST00000005226 CFAP43Q8NDM7 1665 aa19.77■□□□□ 0.76
USH1C-201ENST00000005226 CCER2I3L3R5 266 aa19.76■□□□□ 0.75
USH1C-201ENST00000005226 PTPRKQ15262 1439 aa19.75■□□□□ 0.75
USH1C-201ENST00000005226 PRDM2Q13029 1718 aa19.75■□□□□ 0.75
USH1C-201ENST00000005226 RBM19Q9Y4C8 960 aaKnown RBP19.73■□□□□ 0.75
USH1C-201ENST00000005226 FANCD2Q9BXW9 1451 aa19.72■□□□□ 0.75
USH1C-201ENST00000005226 CASKIN1Q8WXD9 1431 aa19.72■□□□□ 0.75
USH1C-201ENST00000005226 FGD6Q6ZV73 1430 aa19.71■□□□□ 0.75
USH1C-201ENST00000005226 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
USH1C-201ENST00000005226 MTUS2Q5JR59 1369 aa19.7■□□□□ 0.74
USH1C-201ENST00000005226 FYCO1Q9BQS8 1478 aa19.7■□□□□ 0.74
USH1C-201ENST00000005226 CCDC18Q5T9S5 1454 aa19.7■□□□□ 0.74
USH1C-201ENST00000005226 CHIC2Q9UKJ5 165 aa19.68■□□□□ 0.74
USH1C-201ENST00000005226 RRP7BPQ9NSQ0 103 aa19.67■□□□□ 0.74
USH1C-201ENST00000005226 AQRO60306 1485 aaKnown RBP eCLIP19.66■□□□□ 0.74
USH1C-201ENST00000005226 HNRNPUQ00839 825 aaKnown RBP eCLIP19.66■□□□□ 0.74
USH1C-201ENST00000005226 POLA1P09884 1462 aaPredicted RBP19.65■□□□□ 0.74
USH1C-201ENST00000005226 NESP48681 1621 aa19.64■□□□□ 0.74
USH1C-201ENST00000005226 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.64■□□□□ 0.73
USH1C-201ENST00000005226 UACAQ9BZF9 1416 aa19.61■□□□□ 0.73
USH1C-201ENST00000005226 TDRD9Q8NDG6 1382 aaKnown RBP19.61■□□□□ 0.73
USH1C-201ENST00000005226 ABCA10Q8WWZ4 1543 aa19.61■□□□□ 0.73
USH1C-201ENST00000005226 TOPBP1Q92547 1522 aa19.61■□□□□ 0.73
USH1C-201ENST00000005226 HFM1A2PYH4 1435 aa19.6■□□□□ 0.73
USH1C-201ENST00000005226 NAIPQ13075 1403 aa19.6■□□□□ 0.73
USH1C-201ENST00000005226 FMN1Q68DA7 1419 aa19.6■□□□□ 0.73
USH1C-201ENST00000005226 EFCAB5A4FU69 1503 aa19.59■□□□□ 0.73
USH1C-201ENST00000005226 ARID3CA6NKF2 412 aa19.59■□□□□ 0.73
USH1C-201ENST00000005226 HSPA5P11021 654 aaKnown RBP19.59■□□□□ 0.73
USH1C-201ENST00000005226 SNAPC4Q5SXM2 1469 aa19.59■□□□□ 0.73
USH1C-201ENST00000005226 PTPN23Q9H3S7 1636 aa19.58■□□□□ 0.72
USH1C-201ENST00000005226 CCDC184Q52MB2 194 aa19.57■□□□□ 0.72
USH1C-201ENST00000005226 NCOA2Q15596 1464 aa19.57■□□□□ 0.72
USH1C-201ENST00000005226 WASHC2AQ641Q2 1341 aa19.57■□□□□ 0.72
USH1C-201ENST00000005226 DNMBPQ6XZF7 1577 aa19.57■□□□□ 0.72
USH1C-201ENST00000005226 FOXD1Q16676 465 aa19.56■□□□□ 0.72
USH1C-201ENST00000005226 CC2D2AQ9P2K1 1620 aa19.56■□□□□ 0.72
USH1C-201ENST00000005226 MYOM3Q5VTT5 1437 aa19.53■□□□□ 0.72
USH1C-201ENST00000005226 MSH5O43196 834 aa19.53■□□□□ 0.72
USH1C-201ENST00000005226 KDM5BQ9UGL1 1544 aa19.52■□□□□ 0.72
USH1C-201ENST00000005226 CTTNBP2Q8WZ74 1663 aa19.52■□□□□ 0.71
USH1C-201ENST00000005226 LRRIQ1Q96JM4 1722 aa19.51■□□□□ 0.71
USH1C-201ENST00000005226 C11orf95C9JLR9 678 aaPredicted RBP19.5■□□□□ 0.71
USH1C-201ENST00000005226 CUL7Q14999 1698 aa19.47■□□□□ 0.71
USH1C-201ENST00000005226 FAM9BQ8IZU0 186 aa19.46■□□□□ 0.71
USH1C-201ENST00000005226 L3MBTL2Q969R5 705 aa19.46■□□□□ 0.71
USH1C-201ENST00000005226 GRIN2BQ13224 1484 aa19.46■□□□□ 0.71
USH1C-201ENST00000005226 EIF4G2P78344 907 aaKnown RBP eCLIP19.45■□□□□ 0.7
USH1C-201ENST00000005226 CNGB1Q14028 1251 aaPredicted RBP19.45■□□□□ 0.7
USH1C-201ENST00000005226 MAGI3Q5TCQ9 1506 aa19.45■□□□□ 0.7
USH1C-201ENST00000005226 DENND4BO75064 1496 aaPredicted RBP19.45■□□□□ 0.7
USH1C-201ENST00000005226 MPHOSPH9Q99550 1183 aa19.44■□□□□ 0.7
USH1C-201ENST00000005226 URB2Q14146 1524 aaKnown RBP19.44■□□□□ 0.7
USH1C-201ENST00000005226 KDM6BO15054 1643 aa19.42■□□□□ 0.7
USH1C-201ENST00000005226 CDK11AQ9UQ88 783 aaPredicted RBP19.42■□□□□ 0.7
USH1C-201ENST00000005226 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
USH1C-201ENST00000005226 GAPVD1Q14C86 1478 aa19.4■□□□□ 0.7
USH1C-201ENST00000005226 SAMD9Q5K651 1589 aa19.4■□□□□ 0.7
USH1C-201ENST00000005226 SUPT6HQ7KZ85 1726 aaKnown RBP19.4■□□□□ 0.7
USH1C-201ENST00000005226 BCL11AQ9H165 835 aa19.39■□□□□ 0.69
USH1C-201ENST00000005226 NBPF8Q3BBV2 869 aa19.38■□□□□ 0.69
USH1C-201ENST00000005226 UGGT2Q9NYU1 1516 aa19.37■□□□□ 0.69
USH1C-201ENST00000005226 MRS2Q9HD23 443 aa19.37■□□□□ 0.69
USH1C-201ENST00000005226 SENP3-EIF4A1A0A087X0R7 540 aa19.36■□□□□ 0.69
USH1C-201ENST00000005226 PRKRIP1Q9H875 184 aaPredicted RBP19.36■□□□□ 0.69
USH1C-201ENST00000005226 EHBP1L1Q8N3D4 1523 aa19.36■□□□□ 0.69
USH1C-201ENST00000005226 B4GALNT3Q6L9W6 998 aa19.35■□□□□ 0.69
USH1C-201ENST00000005226 CNTLNQ9NXG0 1405 aa19.34■□□□□ 0.69
USH1C-201ENST00000005226 CCDC7Q96M83 1385 aa19.32■□□□□ 0.68
USH1C-201ENST00000005226 ZNF644Q9H582 1327 aaPredicted RBP19.32■□□□□ 0.68
USH1C-201ENST00000005226 CDK13Q14004 1512 aaKnown RBP19.31■□□□□ 0.68
USH1C-201ENST00000005226 PPP4R2Q9NY27 417 aa19.31■□□□□ 0.68
USH1C-201ENST00000005226 ARHGEF11O15085 1522 aa19.31■□□□□ 0.68
USH1C-201ENST00000005226 ABCA5Q8WWZ7 1642 aa19.3■□□□□ 0.68
USH1C-201ENST00000005226 POLR3GLQ9BT43 218 aa19.3■□□□□ 0.68
USH1C-201ENST00000005226 TCOF1Q13428 1488 aaKnown RBP19.28■□□□□ 0.68
USH1C-201ENST00000005226 FANCIQ9NVI1 1328 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms