RNA–Protein interactions for RNA: ENSMUST00000040111.9

Ttc28-201, Transcript of Tetratricopeptide repeat protein 28, mousemouse

APPRIS ALT2 TSL 5 BASIC

Gene Ttc28, Length 10,780 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ttc28-201ENSMUST00000040111 NgefQ8CHT1 710 aa11.94□□□□□ -0.5
Ttc28-201ENSMUST00000040111 MyclP10166 368 aa11.92□□□□□ -0.5
Ttc28-201ENSMUST00000040111 Apbb1Q9QXJ1 710 aa11.91□□□□□ -0.5
Ttc28-201ENSMUST00000040111 Mrs2Q5NCE8 434 aa11.91□□□□□ -0.5
Ttc28-201ENSMUST00000040111 Dcaf1Q80TR8 1506 aa11.9□□□□□ -0.5
Ttc28-201ENSMUST00000040111 Arid4bA2CG63 1314 aaKnown RBP11.9□□□□□ -0.5
Ttc28-201ENSMUST00000040111 Cnga1P29974 684 aa11.89□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Setd5Q5XJV7 1441 aa11.89□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Arid3cA6PWV5 409 aa11.89□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Stk24Q99KH8 431 aa11.88□□□□□ -0.51
Ttc28-201ENSMUST00000040111 CatipB9EKE5 520 aa11.88□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Senp3Q9EP97 568 aaKnown RBP11.86□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Anks4bQ8K3X6 423 aa11.86□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Rtn4Q99P72 1162 aaKnown RBP11.84□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Ythdc1E9Q5K9 736 aaKnown RBP11.84□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Rrp7aQ9D1C9 280 aaKnown RBP11.83□□□□□ -0.51
Ttc28-201ENSMUST00000040111 Cep164Q5DU05 1446 aa11.83□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Ppp4r2Q0VGB7 417 aa11.83□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Aplp2Q06335 707 aa11.81□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Neurod2Q62414 383 aa11.8□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Armcx1Q9CX83 456 aa11.78□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Plin1Q8CGN5 517 aa11.78□□□□□ -0.52
Ttc28-201ENSMUST00000040111 Ppp1r18Q8BQ30 594 aa11.75□□□□□ -0.53
Ttc28-201ENSMUST00000040111 Calr4Q3TQS0 420 aa11.75□□□□□ -0.53
Ttc28-201ENSMUST00000040111 1700019A02RikA0A087WPV9 146 aa11.73□□□□□ -0.53
Ttc28-201ENSMUST00000040111 Dbr1Q923B1 550 aa11.73□□□□□ -0.53
Ttc28-201ENSMUST00000040111 Rsf1E9PWW9 1441 aaKnown RBP11.72□□□□□ -0.53
Ttc28-201ENSMUST00000040111 Stk26Q99JT2 416 aa11.72□□□□□ -0.53
Ttc28-201ENSMUST00000040111 Lmod3E9QA62 571 aa11.7□□□□□ -0.54
Ttc28-201ENSMUST00000040111 MlecQ6ZQI3 291 aaKnown RBP11.7□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Hspa5P20029 655 aaKnown RBP11.7□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Ubap1lG3UW59 384 aa11.7□□□□□ -0.54
Ttc28-201ENSMUST00000040111 DekQ7TNV0 380 aaKnown RBP11.7□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Sin3aQ60520 1274 aaKnown RBP11.69□□□□□ -0.54
Ttc28-201ENSMUST00000040111 NacadQ5SWP3 1504 aa11.69□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Znf316Q6PGE4 1016 aa11.69□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Gm20521D3Z5F7 333 aa11.68□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Upf2A2AT37 1269 aaKnown RBP11.68□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Slc4a3P16283 1227 aa11.66□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Mroh3A0A1D5RM54 893 aa11.66□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Sox12Q04890 314 aa11.65□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Golga3P55937 1487 aa11.65□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Fgd1P52734 960 aa11.65□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Ercc6F8VPZ5 1481 aa11.65□□□□□ -0.54
Ttc28-201ENSMUST00000040111 Srpk2O54781 681 aaKnown RBP11.65□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Exosc9Q9JHI7 438 aaKnown RBP11.64□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Clstn1Q9EPL2 979 aa11.64□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Stag3O70576 1240 aa11.63□□□□□ -0.55
Ttc28-201ENSMUST00000040111 SafbD3YXK2 937 aaKnown RBP11.62□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Gm6268A2A3U9 297 aa11.62□□□□□ -0.55
Ttc28-201ENSMUST00000040111 1700123L14RikQ3V2K7 440 aa11.62□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Card11Q8CIS0 1159 aa11.62□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Ccdc88bQ4QRL3 1481 aa11.62□□□□□ -0.55
Ttc28-201ENSMUST00000040111 AknaQ80VW7 1404 aa11.61□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Hsp90aa1P07901 733 aaKnown RBP11.61□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Fam71e1A1L3C1 212 aa11.6□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Kdm5dQ62240 1548 aa11.6□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Wwc2Q6NXJ0 1187 aa11.59□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Tnnt1O88346 262 aa11.59□□□□□ -0.55
Ttc28-201ENSMUST00000040111 Wdr43Q6ZQL4 677 aaKnown RBP11.58□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Ccdc9Q8VC31 543 aaKnown RBP11.58□□□□□ -0.56
Ttc28-201ENSMUST00000040111 IqubQ8CDK3 788 aa11.57□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Rpap1Q80TE0 1409 aa11.57□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Q8BT18 775 aa11.57□□□□□ -0.56
Ttc28-201ENSMUST00000040111 B4galnt3Q6L8S8 986 aa11.56□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Ofd1Q80Z25 1017 aa11.56□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Bcl11aQ9QYE3 773 aa11.56□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Clstn2Q9ER65 966 aa11.55□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Ccer2J3QPU5 274 aa11.54□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Baz1aO88379 1555 aa11.54□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Mtus2Q3UHD3 1353 aa11.53□□□□□ -0.56
Ttc28-201ENSMUST00000040111 Cabp1Q9JLK7 227 aa11.52□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Ifit1bl1D3Z6F0 470 aa11.52□□□□□ -0.57
Ttc28-201ENSMUST00000040111 CanxP35564 591 aaKnown RBP11.51□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Trim30dE9PWL0 497 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Trak1Q6PD31 939 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Ccdc18Q640L5 1455 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Eea1Q8BL66 1411 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Pibf1E9Q6K3 756 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Ggt6Q6PDE7 497 aa11.5□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Spryd3E9Q9B3 442 aa11.49□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Map4P27546 1125 aaKnown RBP11.49□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Hsp90ab1P11499 724 aaKnown RBP11.49□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Pkd2O35245 966 aa11.47□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Aebp1Q640N1 1128 aa11.47□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Znf330Q922H9 316 aa11.47□□□□□ -0.57
Ttc28-201ENSMUST00000040111 U2surpQ6NV83 1029 aaKnown RBP11.47□□□□□ -0.57
Ttc28-201ENSMUST00000040111 Tcerg1Q8CGF7 1100 aaKnown RBP11.46□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Rundc1Q0VDN7 615 aa11.46□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Birc3O08863 600 aa11.45□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Kif27Q7M6Z4 1394 aa11.43□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Cecr2E9Q2Z1 1453 aa11.43□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Hdac5Q9Z2V6 1113 aa11.43□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Exoc6Q8R313 802 aa11.41□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Txndc2Q6P902 515 aa11.41□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Trim44Q9QXA7 346 aa11.41□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Mapk8ip3Q9ESN9 1337 aa11.4□□□□□ -0.58
Ttc28-201ENSMUST00000040111 Kif3bQ61771 747 aa11.39□□□□□ -0.59
Ttc28-201ENSMUST00000040111 Psme1P97371 249 aa11.39□□□□□ -0.59
Ttc28-201ENSMUST00000040111 PtmaP26350 111 aa11.39□□□□□ -0.59
Retrieved 100 of 22,080 RNA–protein pairs in 18.1 ms