RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 PXR1P53335 271 aaPredicted RBP8.95□□□□□ -0.98
LSR1LSR1 BET4Q00618 327 aa8.95□□□□□ -0.98
LSR1LSR1 RNY1Q02933 434 aaKnown RBP8.95□□□□□ -0.98
LSR1LSR1 CWC15Q03772 175 aaKnown RBP8.95□□□□□ -0.98
LSR1LSR1 YLR455WQ06188 304 aa8.95□□□□□ -0.98
LSR1LSR1 YOR238WQ08634 303 aa8.95□□□□□ -0.98
LSR1LSR1 HFI1Q12060 488 aa8.95□□□□□ -0.98
LSR1LSR1 YBL029C-AQ3E756 94 aa8.95□□□□□ -0.98
LSR1LSR1 UBR2Q07963 1872 aa8.95□□□□□ -0.98
LSR1LSR1 CHS1P08004 1131 aa8.94□□□□□ -0.98
LSR1LSR1 TSR4P25040 408 aa8.94□□□□□ -0.98
LSR1LSR1 VBA3P25594 458 aa8.94□□□□□ -0.98
LSR1LSR1 PRR1P28708 518 aa8.94□□□□□ -0.98
LSR1LSR1 SEC6P32844 805 aa8.94□□□□□ -0.98
LSR1LSR1 SKG6P32900 734 aaPredicted RBP8.94□□□□□ -0.98
LSR1LSR1 SMY2P32909 740 aaKnown RBP8.94□□□□□ -0.98
LSR1LSR1 SRB2P34162 210 aa8.94□□□□□ -0.98
LSR1LSR1 VBA5P36172 582 aa8.94□□□□□ -0.98
LSR1LSR1 NOP4P37838 685 aaKnown RBP8.94□□□□□ -0.98
LSR1LSR1 FLR1P38124 548 aa8.94□□□□□ -0.98
LSR1LSR1 TSC10P38342 320 aa8.94□□□□□ -0.98
LSR1LSR1 YHR054CP38780 354 aa8.94□□□□□ -0.98
LSR1LSR1 RSC30P38781 883 aa8.94□□□□□ -0.98
LSR1LSR1 CKB2P38930 258 aa8.94□□□□□ -0.98
LSR1LSR1 YDR089WP38966 869 aa8.94□□□□□ -0.98
LSR1LSR1 RPT2P40327 437 aaKnown RBP8.94□□□□□ -0.98
LSR1LSR1 JEM1P40358 645 aa8.94□□□□□ -0.98
LSR1LSR1 RNR4P49723 345 aaKnown RBP8.94□□□□□ -0.98
LSR1LSR1 ALT1P52893 592 aa8.94□□□□□ -0.98
LSR1LSR1 ARI1P53111 347 aaKnown RBP8.94□□□□□ -0.98
LSR1LSR1 DOS2P54858 310 aa8.94□□□□□ -0.98
LSR1LSR1 CIR2Q08822 631 aa8.94□□□□□ -0.98
LSR1LSR1 VPS54Q12071 889 aa8.94□□□□□ -0.98
LSR1LSR1 YPR027CQ12079 277 aa8.94□□□□□ -0.98
LSR1LSR1 YEL077CQ3E7X8 1277 aa8.94□□□□□ -0.98
LSR1LSR1 FRE1P32791 686 aa8.93□□□□□ -0.98
LSR1LSR1 CHS6P40955 746 aa8.93□□□□□ -0.98
LSR1LSR1 MAD3P47074 515 aa8.93□□□□□ -0.98
LSR1LSR1 MIG2P53035 382 aa8.93□□□□□ -0.98
LSR1LSR1 SLG1P54867 378 aa8.93□□□□□ -0.98
LSR1LSR1 SNU56Q03782 492 aaKnown RBP8.93□□□□□ -0.98
LSR1LSR1 MEU1Q07938 337 aaKnown RBP RIP-Chip data8.93□□□□□ -0.98not detected
LSR1LSR1 YLL056CQ12177 298 aa8.93□□□□□ -0.98
LSR1LSR1 VPS5Q92331 675 aa8.93□□□□□ -0.98
LSR1LSR1 IZH4Q99393 312 aa8.93□□□□□ -0.98
LSR1LSR1 RPL24AP04449 155 aaKnown RBP8.92□□□□□ -0.98
LSR1LSR1 YPK1P12688 680 aaKnown RBP8.92□□□□□ -0.98
LSR1LSR1 AGP2P38090 596 aa8.92□□□□□ -0.98
LSR1LSR1 RIM2P38127 377 aa8.92□□□□□ -0.98
LSR1LSR1 DIA4P38705 446 aaPredicted RBP8.92□□□□□ -0.98
LSR1LSR1 YHL008CP38750 627 aa8.92□□□□□ -0.98
LSR1LSR1 PEP8P40335 379 aa8.92□□□□□ -0.98
LSR1LSR1 MND2P40577 368 aa8.92□□□□□ -0.98
LSR1LSR1 YPR003CP53394 754 aa8.92□□□□□ -0.98
LSR1LSR1 MZM1Q03429 123 aaPredicted RBP8.92□□□□□ -0.98
LSR1LSR1 YMR160WQ03823 816 aa8.92□□□□□ -0.98
LSR1LSR1 CDD1Q06549 142 aa8.92□□□□□ -0.98
LSR1LSR1 MSC6Q08818 692 aaKnown RBP8.92□□□□□ -0.98
LSR1LSR1 SNX3Q08826 162 aaKnown RBP8.92□□□□□ -0.98
LSR1LSR1 TIF1P10081 395 aaKnown RBP8.91□□□□□ -0.98
LSR1LSR1 GPA2P10823 449 aa8.91□□□□□ -0.98
LSR1LSR1 WHI2P12611 486 aa8.91□□□□□ -0.98
LSR1LSR1 SNA3P14359 133 aa8.91□□□□□ -0.98
LSR1LSR1 GLN3P18494 730 aa8.91□□□□□ -0.98
LSR1LSR1 AMS1P22855 1083 aa8.91□□□□□ -0.98
LSR1LSR1 RAD51P25454 400 aa8.91□□□□□ -0.98
LSR1LSR1 RAD14P28519 371 aa8.91□□□□□ -0.98
LSR1LSR1 HEM3P28789 327 aa8.91□□□□□ -0.98
LSR1LSR1 DPH5P32469 300 aaPredicted RBP8.91□□□□□ -0.98
LSR1LSR1 AVT2P39981 480 aa8.91□□□□□ -0.98
LSR1LSR1 RLP7P40693 322 aaKnown RBP8.91□□□□□ -0.98
LSR1LSR1 YFL012WP43580 148 aa8.91□□□□□ -0.98
LSR1LSR1 POL31P46957 487 aa8.91□□□□□ -0.98
LSR1LSR1 RRT6P53117 311 aaPredicted RBP8.91□□□□□ -0.98
LSR1LSR1 UTP8P53276 713 aaKnown RBP8.91□□□□□ -0.98
LSR1LSR1 YGR283CP53336 341 aaPredicted RBP8.91□□□□□ -0.98
LSR1LSR1 COS6P53344 381 aa8.91□□□□□ -0.98
LSR1LSR1 ACL4Q03771 387 aa8.91□□□□□ -0.98
LSR1LSR1 MSD1P15179 658 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 CYM1P32898 989 aa8.9□□□□□ -0.98
LSR1LSR1 NUP120P35729 1037 aa8.9□□□□□ -0.98
LSR1LSR1 CTP1P38152 299 aa8.9□□□□□ -0.98
LSR1LSR1 KSP1P38691 1029 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 NMD3P38861 518 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 LYS9P38999 446 aa8.9□□□□□ -0.98
LSR1LSR1 SSP120P39931 234 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 DSE1P40077 573 aa8.9□□□□□ -0.98
LSR1LSR1 DPH1P40487 425 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 SEC27P41811 889 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 FAR3P46671 204 aa8.9□□□□□ -0.98
LSR1LSR1 TAF1P46677 1066 aa8.9□□□□□ -0.98
LSR1LSR1 CCT8P47079 568 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 YJR054WP47114 497 aa8.9□□□□□ -0.98
LSR1LSR1 MRM2P53123 320 aa8.9□□□□□ -0.98
LSR1LSR1 RCF2P53721 224 aa8.9□□□□□ -0.98
LSR1LSR1 TVP15Q03860 143 aa8.9□□□□□ -0.98
LSR1LSR1 SND1Q04007 877 aa8.9□□□□□ -0.98
LSR1LSR1 RSA3Q05942 220 aaKnown RBP8.9□□□□□ -0.98
LSR1LSR1 YSH1Q06224 779 aaPredicted RBP8.9□□□□□ -0.98
LSR1LSR1 ADY3Q07732 790 aa8.9□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms