RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	ARL1	P38116	183 aa	Known RBP	4.66	□□□□□ -1.66
CDC9	YDL164C	RPN10	P38886	268 aa	Known RBP	4.66	□□□□□ -1.66
CDC9	YDL164C	PCL7	P40186	285 aa		4.66	□□□□□ -1.66
CDC9	YDL164C	ERV25	P54837	211 aa	Known RBP	4.66	□□□□□ -1.66
CDC9	YDL164C	OAZ1	Q02803	292 aa		4.66	□□□□□ -1.66
CDC9	YDL164C	RPN7	Q06103	429 aa	Known RBP	4.66	□□□□□ -1.66
CDC9	YDL164C	PSF3	Q12146	194 aa		4.66	□□□□□ -1.66
CDC9	YDL164C	GET3	Q12154	354 aa	Known RBP	4.66	□□□□□ -1.66
CDC9	YDL164C	SOD2	P00447	233 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	DBP3	P20447	523 aa	Known RBP	4.65	□□□□□ -1.66
CDC9	YDL164C	AFT1	P22149	690 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	RIB7	P33312	244 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	MAC1	P35192	417 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	UBP13	P38187	747 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	SIF2	P38262	535 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	RTS1	P38903	757 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	SEC28	P40509	296 aa	Known RBP	4.65	□□□□□ -1.66
CDC9	YDL164C	MSB3	P48566	633 aa	Predicted RBP	4.65	□□□□□ -1.66
CDC9	YDL164C	YGR045C	P53229	120 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	BNI5	P53890	448 aa	Known RBP	4.65	□□□□□ -1.66
CDC9	YDL164C	RIX7	Q07844	837 aa	Known RBP	4.65	□□□□□ -1.66
CDC9	YDL164C	XYL2	Q07993	356 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	PSY3	Q12318	242 aa		4.65	□□□□□ -1.66
CDC9	YDL164C	PET123	P17558	318 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	SNF5	P18480	905 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	RAD51	P25454	400 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	NAM7	P30771	971 aa	Known RBP	4.65	□□□□□ -1.67
CDC9	YDL164C	DBF4	P32325	704 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	CNS1	P33313	385 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	SRO77	P38163	1010 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	EFM4	P40516	257 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	ERB1	Q04660	807 aa	Known RBP	4.65	□□□□□ -1.67
CDC9	YDL164C	ASM4	Q05166	528 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	RSA3	Q05942	220 aa	Known RBP	4.65	□□□□□ -1.67
CDC9	YDL164C	PML1	Q07930	204 aa	Predicted RBP	4.65	□□□□□ -1.67
CDC9	YDL164C	YPL260W	Q08977	551 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	ICL2	Q12031	575 aa		4.65	□□□□□ -1.67
CDC9	YDL164C	PDH1	Q12428	516 aa	Known RBP	4.65	□□□□□ -1.67
CDC9	YDL164C	CHD1	P32657	1468 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	RPC40	P07703	335 aa	Known RBP	4.64	□□□□□ -1.67
CDC9	YDL164C	DAL80	P26343	269 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	EFT1	P32324	842 aa	Known RBP	4.64	□□□□□ -1.67
CDC9	YDL164C	SAC6	P32599	642 aa	Known RBP	4.64	□□□□□ -1.67
CDC9	YDL164C	LAS1	P36146	502 aa	Predicted RBP	4.64	□□□□□ -1.67
CDC9	YDL164C	PCH2	P38126	564 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	LYS9	P38999	446 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	YAR028W	P39548	234 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	RTT105	P40063	208 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	PEX25	Q02969	394 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	RAD33	Q04231	177 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	CRR1	Q05790	422 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	MMR1	Q06324	491 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	RSC2	Q06488	889 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	NMD4	Q12129	218 aa		4.64	□□□□□ -1.67
CDC9	YDL164C	CDC19	P00549	500 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	RPB2	P08518	1224 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	YCK1	P23291	538 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	MRP20	P32387	263 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	ADH5	P38113	351 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	FLR1	P38124	548 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YIL161W	P40449	235 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	PRK1	P40494	810 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	RAD17	P48581	401 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	TOF1	P53840	1238 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	RMT2	Q03305	412 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YLH47	Q06493	454 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	SWA2	Q06677	668 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	ENT4	Q07872	247 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	SKS1	Q12505	502 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	NOT3	P06102	836 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	TPK1	P06244	397 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	RIT1	P23796	513 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	SNT1	P25357	1226 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	NFS1	P25374	497 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	IMG2	P25642	146 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	URA7	P28274	579 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	PUP2	P32379	260 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	RPD3	P32561	433 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YPT7	P32939	208 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	GEX2	P36173	615 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	REI1	P38344	393 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	MRX1	P40050	688 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YER158C	P40095	573 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	NIT3	P49954	291 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	ALT1	P52893	592 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	BSC5	P53755	489 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	ARX1	Q03862	593 aa	Known RBP	4.63	□□□□□ -1.67
CDC9	YDL164C	AIM32	Q04689	311 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	PHO92	Q06390	306 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YCG1	Q06680	1035 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	YLL058W	Q12198	575 aa		4.63	□□□□□ -1.67
CDC9	YDL164C	TUB2	P02557	457 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	ERS1	P17261	260 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	ASH1	P34233	588 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	UIP5	P36137	443 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	RFC1	P38630	861 aa	Known RBP	4.62	□□□□□ -1.67
CDC9	YDL164C	BRE2	P43132	505 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	GCV1	P48015	400 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	TCB2	P48231	1178 aa		4.62	□□□□□ -1.67
CDC9	YDL164C	IMA1	P53051	589 aa		4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 14 ms