RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	TOS1	P38288	455 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	ARB1	P40024	610 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	RTT105	P40063	208 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	GPD2	P41911	440 aa	Known RBP	4.83	□□□□□ -1.64
CDC48	YDL126C	IRC6	P43615	237 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	NPA3	P47122	385 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	PIB2	P53191	635 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	UBP2	Q01476	1272 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	VPS20	Q04272	221 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	YKU80	Q04437	629 aa		4.83	□□□□□ -1.64
CDC48	YDL126C	RPC53	P25441	422 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	KNS1	P32350	737 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	ACP1	P32463	125 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	SAS3	P34218	831 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	QNS1	P38795	714 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	LAM1	P38851	1228 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	DUN1	P39009	513 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	OAF1	P39720	1047 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	SPO22	P40511	975 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	IMA5	P40884	581 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	CIT3	P43635	486 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	KEL2	P50090	882 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	BTN2	P53286	410 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	TDA9	Q04545	1251 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	FAP7	Q12055	197 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	SCM3	Q12334	223 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	SNF5	P18480	905 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	MSH1	P25846	959 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	KIP1	P28742	1111 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	HEM12	P32347	362 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	DOM34	P33309	386 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	TIF3	P34167	436 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	YKL050C	P35736	922 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	HXT6	P39003	570 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	HXT7	P39004	570 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	HIS6	P40545	261 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	SBE2	P42223	864 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	ENP2	P48234	707 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	SHE4	P51534	789 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	ARE2	P53629	642 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	ADE12	P80210	433 aa	Known RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	GTR1	Q00582	310 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	SYF1	Q04048	859 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	GIS4	Q04233	774 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	RSC3	Q06639	885 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	THI3	Q07471	609 aa		4.82	□□□□□ -1.64
CDC48	YDL126C	RCL1	Q08096	367 aa	Predicted RBP	4.82	□□□□□ -1.64
CDC48	YDL126C	AAC3	P18238	307 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	CDC60	P26637	1090 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	MGM1	P32266	881 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	HIR2	P32480	875 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	DUG1	P43616	481 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	ARP9	Q05123	467 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	RSA3	Q05942	220 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	ATG33	Q06485	197 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	TSR2	Q06672	205 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	ALG6	Q12001	544 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	HKR1	P41809	1802 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	BIK1	P11709	440 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	REC107	P21651	314 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	RME1	P32338	300 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	BUD2	P33314	1104 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
CDC48	YDL126C	REI1	P38344	393 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	DSS1	P39112	969 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	BDH2	P39713	417 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	GEM1	P39722	662 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	ICP55	P40051	511 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	CCT5	P40413	562 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	NAS2	P40555	220 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	SOK2	P53438	785 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	FDC1	Q03034	503 aa		4.81	□□□□□ -1.64
CDC48	YDL126C	NBA1	Q08229	501 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	RUD3	Q12234	484 aa	Known RBP	4.81	□□□□□ -1.64
CDC48	YDL126C	RPP1A	P05318	106 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	ARC19	P33204	171 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	YAR028W	P39548	234 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	GIP2	P40036	548 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	YMR147W	P40218	223 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	RIC1	P40395	1056 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	DPH1	P40487	425 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	YML6	P51998	286 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	RRT6	P53117	311 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	ECM9	Q02202	377 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	SML1	Q04964	104 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	ARV1	Q06541	321 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	FAS2	P19097	1887 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	BI4	P03879	638 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
CDC48	YDL126C	JNM1	P36224	373 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	TMA108	P40462	946 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	NEO1	P40527	1151 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	HYR1	P40581	163 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	SKP2	P42843	763 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	HST1	P53685	503 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	ARC35	P53731	342 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	YNR063W	P53749	607 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	DUS3	Q06053	668 aa	Known RBP	4.8	□□□□□ -1.64
CDC48	YDL126C	YPL260W	Q08977	551 aa		4.8	□□□□□ -1.64
CDC48	YDL126C	TAH18	Q12181	623 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 51.5 ms