RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W SDH5Q08230 162 aa6.58□□□□□ -1.36
CAF40YNL288W DNL4Q08387 944 aaPredicted RBP6.58□□□□□ -1.36
CAF40YNL288W TMA16Q08687 178 aa6.58□□□□□ -1.36
CAF40YNL288W FAL1Q12099 399 aaKnown RBP6.58□□□□□ -1.36
CAF40YNL288W SLP1Q12232 587 aa6.58□□□□□ -1.36
CAF40YNL288W YDR215CQ12240 137 aa6.58□□□□□ -1.36
CAF40YNL288W OSH2Q12451 1283 aa6.58□□□□□ -1.36
CAF40YNL288W YBL113CQ7M4S9 792 aa6.58□□□□□ -1.36
CAF40YNL288W HIP1P06775 603 aa6.57□□□□□ -1.36
CAF40YNL288W YCK2P23292 546 aaKnown RBP6.57□□□□□ -1.36
CAF40YNL288W CAD1P24813 409 aaKnown RBP6.57□□□□□ -1.36
CAF40YNL288W PIN4P34217 668 aaKnown RBP RIP-Chip data6.57□□□□□ -1.36not detected
CAF40YNL288W SAP190P36123 1033 aa6.57□□□□□ -1.36
CAF40YNL288W YHR054CP38780 354 aa6.57□□□□□ -1.36
CAF40YNL288W YER186CP40101 306 aa6.57□□□□□ -1.36
CAF40YNL288W OPT1P40897 799 aa6.57□□□□□ -1.36
CAF40YNL288W CCT8P47079 568 aaKnown RBP6.57□□□□□ -1.36
CAF40YNL288W SOK2P53438 785 aaPredicted RBP6.57□□□□□ -1.36
CAF40YNL288W SSL2Q00578 843 aa6.57□□□□□ -1.36
CAF40YNL288W YLR455WQ06188 304 aa6.57□□□□□ -1.36
CAF40YNL288W SPO75Q07798 868 aa6.57□□□□□ -1.36
CAF40YNL288W SGT2Q12118 346 aaKnown RBP6.57□□□□□ -1.36
CAF40YNL288W YOR022CQ12204 715 aa6.57□□□□□ -1.36
CAF40YNL288W VPS13Q07878 3144 aa6.56□□□□□ -1.36
CAF40YNL288W ASP3-2P0CX77 362 aa6.56□□□□□ -1.36
CAF40YNL288W ASP3-3P0CX78 362 aa6.56□□□□□ -1.36
CAF40YNL288W ASP3-4P0CX79 362 aa6.56□□□□□ -1.36
CAF40YNL288W ASP3-1P0CZ17 362 aa6.56□□□□□ -1.36
CAF40YNL288W RPL4AP10664 362 aaKnown RBP6.56□□□□□ -1.36
CAF40YNL288W RSA4P25382 515 aaKnown RBP6.56□□□□□ -1.36
CAF40YNL288W CYS3P31373 394 aaKnown RBP6.56□□□□□ -1.36
CAF40YNL288W SWI3P32591 825 aa6.56□□□□□ -1.36
CAF40YNL288W CSE2P33308 149 aa6.56□□□□□ -1.36
CAF40YNL288W RPC25P35718 212 aa6.56□□□□□ -1.36
CAF40YNL288W TAT1P38085 619 aa6.56□□□□□ -1.36
CAF40YNL288W APN2P38207 520 aa6.56□□□□□ -1.36
CAF40YNL288W MIP6P38760 659 aaKnown RBP6.56□□□□□ -1.36
CAF40YNL288W ERP5P38819 212 aa6.56□□□□□ -1.36
CAF40YNL288W SPT8P38915 602 aa6.56□□□□□ -1.36
CAF40YNL288W GIP2P40036 548 aa6.56□□□□□ -1.36
CAF40YNL288W DAS1P47005 663 aa6.56□□□□□ -1.36
CAF40YNL288W PRY1P47032 299 aa6.56□□□□□ -1.36
CAF40YNL288W RPL4BP49626 362 aaKnown RBP6.56□□□□□ -1.36
CAF40YNL288W RPA49Q01080 415 aaPredicted RBP6.56□□□□□ -1.36
CAF40YNL288W YLR297WQ05899 129 aa6.56□□□□□ -1.36
CAF40YNL288W GIS3Q12418 502 aa6.56□□□□□ -1.36
CAF40YNL288W FUS1P11710 512 aa6.55□□□□□ -1.36
CAF40YNL288W POL3P15436 1097 aa6.55□□□□□ -1.36
CAF40YNL288W SPO11P23179 398 aa6.55□□□□□ -1.36
CAF40YNL288W MPE1P35728 441 aaKnown RBP6.55□□□□□ -1.36
CAF40YNL288W HEL1P36113 551 aa6.55□□□□□ -1.36
CAF40YNL288W YHR202WP38887 602 aa6.55□□□□□ -1.36
CAF40YNL288W SDS3P40505 327 aa6.55□□□□□ -1.36
CAF40YNL288W TED1P40533 473 aa6.55□□□□□ -1.36
CAF40YNL288W FYV8P46949 817 aaKnown RBP6.55□□□□□ -1.36
CAF40YNL288W MET13P53128 600 aa6.55□□□□□ -1.36
CAF40YNL288W NOP13P53883 403 aaKnown RBP RIP-Chip data6.55□□□□□ -1.36not detected
CAF40YNL288W PLP2Q12017 286 aa6.55□□□□□ -1.36
CAF40YNL288W COX11P19516 300 aaKnown RBP6.54□□□□□ -1.36
CAF40YNL288W MSH3P25336 1018 aa6.54□□□□□ -1.36
CAF40YNL288W PRR1P28708 518 aa6.54□□□□□ -1.36
CAF40YNL288W MIC60P36112 540 aa6.54□□□□□ -1.36
CAF40YNL288W SMC3P47037 1230 aa6.54□□□□□ -1.36
CAF40YNL288W BUD9P53226 547 aa6.54□□□□□ -1.36
CAF40YNL288W BIO5P53744 561 aaKnown RBP6.54□□□□□ -1.36
CAF40YNL288W RCR2Q03446 210 aaKnown RBP6.54□□□□□ -1.36
CAF40YNL288W CSR1Q06705 408 aaKnown RBP6.54□□□□□ -1.36
CAF40YNL288W IWR1Q07532 353 aaPredicted RBP6.54□□□□□ -1.36
CAF40YNL288W SLX4Q12098 748 aa6.54□□□□□ -1.36
CAF40YNL288W CLC1P17891 233 aa6.53□□□□□ -1.36
CAF40YNL288W PHO13P19881 312 aa6.53□□□□□ -1.36
CAF40YNL288W ADK2P26364 225 aa6.53□□□□□ -1.36
CAF40YNL288W KIP1P28742 1111 aa6.53□□□□□ -1.36
CAF40YNL288W CCL1P37366 393 aa6.53□□□□□ -1.36
CAF40YNL288W KAP123P40069 1113 aaKnown RBP6.53□□□□□ -1.36
CAF40YNL288W MDJ2P42834 146 aa6.53□□□□□ -1.36
CAF40YNL288W VPS75P53853 264 aa6.53□□□□□ -1.36
CAF40YNL288W ESBP6P53918 673 aa6.53□□□□□ -1.36
CAF40YNL288W EEB1Q02891 456 aa6.53□□□□□ -1.36
CAF40YNL288W EMI2Q04409 500 aaKnown RBP6.53□□□□□ -1.36
CAF40YNL288W YPR078CQ06813 372 aa6.53□□□□□ -1.36
CAF40YNL288W ESC8Q08119 714 aa6.53□□□□□ -1.36
CAF40YNL288W CWC2Q12046 339 aaPredicted RBP6.53□□□□□ -1.36
CAF40YNL288W CTF3Q12748 733 aa6.53□□□□□ -1.36
CAF40YNL288W TAO3P40468 2376 aa6.53□□□□□ -1.36
CAF40YNL288W UBR2Q07963 1872 aa6.53□□□□□ -1.36
CAF40YNL288W TY4B-PA0A0B7P3V8 1104 aa6.52□□□□□ -1.37
CAF40YNL288W HAP2P06774 265 aa6.52□□□□□ -1.37
CAF40YNL288W CDC42P19073 191 aa6.52□□□□□ -1.37
CAF40YNL288W VPS3P23643 1011 aa6.52□□□□□ -1.37
CAF40YNL288W SEC65P29478 273 aa6.52□□□□□ -1.37
CAF40YNL288W PYC2P32327 1180 aaKnown RBP6.52□□□□□ -1.37
CAF40YNL288W NIP100P33420 868 aa6.52□□□□□ -1.37
CAF40YNL288W KDX1P36005 433 aa6.52□□□□□ -1.37
CAF40YNL288W VFA1P40080 203 aa6.52□□□□□ -1.37
CAF40YNL288W LEM3P42838 414 aa6.52□□□□□ -1.37
CAF40YNL288W YFL052WP43551 465 aa6.52□□□□□ -1.37
CAF40YNL288W CPR7P47103 393 aa6.52□□□□□ -1.37
CAF40YNL288W HFM1P51979 1187 aa6.52□□□□□ -1.37
CAF40YNL288W YNL011CP53980 444 aa6.52□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms