RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W MOT1P32333 1867 aa3.89□□□□□ -1.79
LCB5YLR260W FLP1P03870 423 aa3.88□□□□□ -1.79
LCB5YLR260W RED1P14291 827 aa3.88□□□□□ -1.79
LCB5YLR260W VMA2P16140 517 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W PHO81P17442 1178 aa3.88□□□□□ -1.79
LCB5YLR260W PRP9P19736 530 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W PRE10P21242 288 aaKnown RBP RIP-Chip data3.88□□□□□ -1.79not detected
LCB5YLR260W DIT1P21623 536 aa3.88□□□□□ -1.79
LCB5YLR260W PGS1P25578 521 aa3.88□□□□□ -1.79
LCB5YLR260W TGL1P34163 548 aa3.88□□□□□ -1.79
LCB5YLR260W AAP1P37898 856 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W SRP72P38688 640 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W OSH3P38713 996 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W NPR3P38742 1146 aa3.88□□□□□ -1.79
LCB5YLR260W AIM46P38885 310 aa3.88□□□□□ -1.79
LCB5YLR260W SLN1P39928 1220 aaPredicted RBP3.88□□□□□ -1.79
LCB5YLR260W CSM2P40465 213 aa3.88□□□□□ -1.79
LCB5YLR260W YGL039WP53183 348 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W CUZ1P53899 274 aa3.88□□□□□ -1.79
LCB5YLR260W YPL062WQ02781 134 aa3.88□□□□□ -1.79
LCB5YLR260W ARA2Q04212 335 aa3.88□□□□□ -1.79
LCB5YLR260W MRD1Q06106 887 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W APC5Q08683 685 aa3.88□□□□□ -1.79
LCB5YLR260W PHR1P05066 565 aaKnown RBP RIP-Chip data3.88□□□□□ -1.79not detected
LCB5YLR260W SRD1P09007 221 aa3.88□□□□□ -1.79
LCB5YLR260W MET8P15807 274 aa3.88□□□□□ -1.79
LCB5YLR260W SRP54P20424 541 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W GSY1P23337 708 aa3.88□□□□□ -1.79
LCB5YLR260W RIT1P23796 513 aa3.88□□□□□ -1.79
LCB5YLR260W PCL2P25693 308 aa3.88□□□□□ -1.79
LCB5YLR260W ORC2P32833 620 aa3.88□□□□□ -1.79
LCB5YLR260W NCL1P38205 684 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W PHO88P38264 188 aaPredicted RBP3.88□□□□□ -1.79
LCB5YLR260W ACO2P39533 789 aa3.88□□□□□ -1.79
LCB5YLR260W TPA1P40032 644 aaKnown RBP3.88□□□□□ -1.79
LCB5YLR260W YIR007WP40566 764 aa3.88□□□□□ -1.79
LCB5YLR260W MRPL19P53875 158 aa3.88□□□□□ -1.79
LCB5YLR260W YTM1Q12024 460 aaPredicted RBP3.88□□□□□ -1.79
LCB5YLR260W VPS13Q07878 3144 aa3.87□□□□□ -1.79
LCB5YLR260W UBR2Q07963 1872 aa3.87□□□□□ -1.79
LCB5YLR260W RPP1AP05318 106 aaPredicted RBP3.87□□□□□ -1.79
LCB5YLR260W SCP160P06105 1222 aaKnown RBP RIP-Chip data3.87□□□□□ -1.79 RIP-Chip
LCB5YLR260W YUR1P26725 428 aa3.87□□□□□ -1.79
LCB5YLR260W RER2P35196 286 aa3.87□□□□□ -1.79
LCB5YLR260W PSY4P38193 441 aa3.87□□□□□ -1.79
LCB5YLR260W MSC7P38694 644 aa3.87□□□□□ -1.79
LCB5YLR260W VPS41P38959 992 aa3.87□□□□□ -1.79
LCB5YLR260W MON1P53129 644 aa3.87□□□□□ -1.79
LCB5YLR260W CTR9P89105 1077 aa3.87□□□□□ -1.79
LCB5YLR260W RNH1Q04740 348 aa3.87□□□□□ -1.79
LCB5YLR260W DUS3Q06053 668 aaKnown RBP3.87□□□□□ -1.79
LCB5YLR260W ICL2Q12031 575 aa3.87□□□□□ -1.79
LCB5YLR260W MDM20Q12387 796 aaKnown RBP3.87□□□□□ -1.79
LCB5YLR260W STF1P01098 86 aa3.86□□□□□ -1.79
LCB5YLR260W CDC9P04819 755 aa3.86□□□□□ -1.79
LCB5YLR260W NUC1P08466 329 aa3.86□□□□□ -1.79
LCB5YLR260W SFL1P20134 766 aa3.86□□□□□ -1.79
LCB5YLR260W RPC53P25441 422 aa3.86□□□□□ -1.79
LCB5YLR260W HEM12P32347 362 aaPredicted RBP3.86□□□□□ -1.79
LCB5YLR260W LYP1P32487 611 aa3.86□□□□□ -1.79
LCB5YLR260W HBS1P32769 611 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W UIP5P36137 443 aa3.86□□□□□ -1.79
LCB5YLR260W BIT2P38346 545 aa3.86□□□□□ -1.79
LCB5YLR260W CKB2P38930 258 aa3.86□□□□□ -1.79
LCB5YLR260W HXT13P39924 564 aa3.86□□□□□ -1.79
LCB5YLR260W SAH1P39954 449 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W NOP16P40007 231 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W PCL10P53124 433 aa3.86□□□□□ -1.79
LCB5YLR260W SOL4P53315 255 aa3.86□□□□□ -1.79
LCB5YLR260W HXT17P53631 564 aa3.86□□□□□ -1.79
LCB5YLR260W HXT15P54854 567 aa3.86□□□□□ -1.79
LCB5YLR260W LAP3Q01532 483 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
LCB5YLR260W YMR265CQ03508 461 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W MYO5Q04439 1219 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W MDM38Q08179 573 aa3.86□□□□□ -1.79
LCB5YLR260W SMF3Q12078 473 aaPredicted RBP3.86□□□□□ -1.79
LCB5YLR260W ERP3Q12403 225 aa3.86□□□□□ -1.79
LCB5YLR260W RMP1Q12530 201 aa3.86□□□□□ -1.79
LCB5YLR260W TUF1P02992 437 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W SES1P07284 462 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W GFA1P14742 717 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W DAL7P21826 554 aa3.86□□□□□ -1.79
LCB5YLR260W CMK1P27466 446 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W FUN30P31380 1131 aa3.86□□□□□ -1.79
LCB5YLR260W DBP7P36120 742 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W GPB2P39717 880 aa3.86□□□□□ -1.79
LCB5YLR260W IRC6P43615 237 aa3.86□□□□□ -1.79
LCB5YLR260W ENP2P48234 707 aaKnown RBP3.86□□□□□ -1.79
LCB5YLR260W NUT1P53114 1132 aa3.86□□□□□ -1.79
LCB5YLR260W NCS2P53923 493 aaPredicted RBP3.86□□□□□ -1.79
LCB5YLR260W TIM10P87108 93 aa3.86□□□□□ -1.79
LCB5YLR260W SLD5Q03406 294 aa3.86□□□□□ -1.79
LCB5YLR260W YMR321CQ04898 105 aa3.86□□□□□ -1.79
LCB5YLR260W HDA2Q06629 674 aa3.86□□□□□ -1.79
LCB5YLR260W ECM30Q06673 1274 aa3.86□□□□□ -1.79
LCB5YLR260W SWA2Q06677 668 aa3.86□□□□□ -1.79
LCB5YLR260W HIP1P06775 603 aa3.85□□□□□ -1.79
LCB5YLR260W RPC40P07703 335 aaKnown RBP3.85□□□□□ -1.79
LCB5YLR260W ILS1P09436 1072 aaKnown RBP3.85□□□□□ -1.79
LCB5YLR260W TRX1P22217 103 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms