Protein–RNA interactions for Protein: P04819

CDC9, DNA ligase 1, yeastyeast

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC9P04819 YML009W-BYML009W-B 477 nt18.52■□□□□ 0.56
CDC9P04819 NOP1YDL014W 984 nt18.21■□□□□ 0.51
CDC9P04819 NSR1YGR159C 1245 nt18.1■□□□□ 0.49
CDC9P04819 YKL036CYKL036C 393 nt17.18■□□□□ 0.34
CDC9P04819 MDJ1YFL016C 1536 nt16.29■□□□□ 0.2
CDC9P04819 YJL027CYJL027C 417 nt16.1■□□□□ 0.17
CDC9P04819 Q0297Q0297 156 nt16.09■□□□□ 0.17
CDC9P04819 SRX1YKL086W 384 nt15.92■□□□□ 0.14
CDC9P04819 SCS3YGL126W 1143 nt15.84■□□□□ 0.13
CDC9P04819 YCR051WYCR051W 669 nt15.08■□□□□ 0
CDC9P04819 YOL085CYOL085C 342 nt14.86□□□□□ -0.03
CDC9P04819 SCJ1YMR214W 1134 nt14.62□□□□□ -0.07
CDC9P04819 PKP1YIL042C 1185 nt14.53□□□□□ -0.08
CDC9P04819 RPP1BYDL130W 321 nt14.42□□□□□ -0.1
CDC9P04819 ATS1YAL020C 1002 nt14.29□□□□□ -0.12
CDC9P04819 DBP2YNL112W 1641 nt14.26□□□□□ -0.13
CDC9P04819 TRN1tP(UGG)A 72 nt14.16□□□□□ -0.14
CDC9P04819 SUF9tP(UGG)F 72 nt14.16□□□□□ -0.14
CDC9P04819 SUF8tP(UGG)H 72 nt14.16□□□□□ -0.14
CDC9P04819 tP(UGG)LtP(UGG)L 72 nt14.16□□□□□ -0.14
CDC9P04819 SUF7tP(UGG)M 72 nt14.16□□□□□ -0.14
CDC9P04819 tP(UGG)N1tP(UGG)N1 72 nt14.16□□□□□ -0.14
CDC9P04819 tP(UGG)N2tP(UGG)N2 72 nt14.16□□□□□ -0.14
CDC9P04819 tP(UGG)O1tP(UGG)O1 72 nt14.16□□□□□ -0.14
CDC9P04819 SUF11tP(UGG)O2 72 nt14.16□□□□□ -0.14
CDC9P04819 YBR190WYBR190W 312 nt13.99□□□□□ -0.17
CDC9P04819 CCC1YLR220W 969 nt13.93□□□□□ -0.18
CDC9P04819 Q0182Q0182 405 nt13.8□□□□□ -0.2
CDC9P04819 PET122YER153C 765 nt13.71□□□□□ -0.21
CDC9P04819 SCR1SCR1 522 nt13.7□□□□□ -0.22
CDC9P04819 RTC3YHR087W 336 nt13.63□□□□□ -0.23
CDC9P04819 tP(UGG)O3tP(UGG)O3 72 nt13.51□□□□□ -0.25
CDC9P04819 MOT3YMR070W 1473 nt13.42□□□□□ -0.26
CDC9P04819 RRN5YLR141W 1092 nt13.35□□□□□ -0.27
CDC9P04819 RVS167YDR388W 1449 nt13.29□□□□□ -0.28
CDC9P04819 SSA3YBL075C 1950 nt13.24□□□□□ -0.29
CDC9P04819 PST2YDR032C 597 nt13.18□□□□□ -0.3
CDC9P04819 RSB1YOR049C 1065 nt13.18□□□□□ -0.3
CDC9P04819 YER088W-BYER088W-B 147 nt13.1□□□□□ -0.31
CDC9P04819 YDJ1YNL064C 1230 nt13.09□□□□□ -0.31
CDC9P04819 PUT4YOR348C 1884 nt13.07□□□□□ -0.32
CDC9P04819 SHR5YOL110W 714 nt12.93□□□□□ -0.34
CDC9P04819 YKL097CYKL097C 411 nt12.86□□□□□ -0.35
CDC9P04819 ARE1YCR048W 1833 nt12.69□□□□□ -0.38
CDC9P04819 GAR1YHR089C 618 nt12.67□□□□□ -0.38
CDC9P04819 URN1YPR152C 1398 nt12.63□□□□□ -0.39
CDC9P04819 POA1YBR022W 534 nt12.59□□□□□ -0.39
CDC9P04819 SAH1YER043C 1350 nt12.57□□□□□ -0.4
CDC9P04819 OPI9YLR338W 858 nt12.54□□□□□ -0.4
CDC9P04819 SHU1YHL006C 453 nt12.51□□□□□ -0.41
CDC9P04819 YHR049C-AYHR049C-A 297 nt12.51□□□□□ -0.41
CDC9P04819 DEP1YAL013W 1218 nt12.5□□□□□ -0.41
CDC9P04819 BSC6YOL137W 1494 nt12.41□□□□□ -0.42
CDC9P04819 RPN10YHR200W 807 nt12.31□□□□□ -0.44
CDC9P04819 TIR1YER011W 765 nt12.26□□□□□ -0.45
CDC9P04819 YNL208WYNL208W 600 nt12.26□□□□□ -0.45
CDC9P04819 YOR139CYOR139C 393 nt12.26□□□□□ -0.45
CDC9P04819 SPT5YML010W 3192 nt12.22□□□□□ -0.45
CDC9P04819 BUD23YCR047C 828 nt12.17□□□□□ -0.46
CDC9P04819 PUN1YLR414C 792 nt12.15□□□□□ -0.46
CDC9P04819 YAL037C-BYAL037C-B 975 nt12.14□□□□□ -0.47
CDC9P04819 PTC2YER089C 1395 nt12.08□□□□□ -0.48
CDC9P04819 NPL3YDR432W 1245 nt12.07□□□□□ -0.48
CDC9P04819 SSA1YAL005C 1929 nt12.02□□□□□ -0.49
CDC9P04819 YJR018WYJR018W 363 nt12.01□□□□□ -0.49
CDC9P04819 NAB2YGL122C 1578 nt11.99□□□□□ -0.49
CDC9P04819 SSA4YER103W 1929 nt11.94□□□□□ -0.5
CDC9P04819 YGR021WYGR021W 873 nt11.88□□□□□ -0.51
CDC9P04819 SRB2YHR041C 633 nt11.87□□□□□ -0.51
CDC9P04819 HOM6YJR139C 1080 nt11.85□□□□□ -0.51
CDC9P04819 YOL037CYOL037C 354 nt11.84□□□□□ -0.51
CDC9P04819 FIS1YIL065C 468 nt11.82□□□□□ -0.52
CDC9P04819 MNP1YGL068W 585 nt11.8□□□□□ -0.52
CDC9P04819 YJR120WYJR120W 351 nt11.79□□□□□ -0.52
CDC9P04819 WWM1YFL010C 636 nt11.76□□□□□ -0.53
CDC9P04819 tM(CAU)CtM(CAU)C 72 nt11.76□□□□□ -0.53
CDC9P04819 IMT4tM(CAU)E 72 nt11.76□□□□□ -0.53
CDC9P04819 IMT3tM(CAU)J3 72 nt11.76□□□□□ -0.53
CDC9P04819 IMT1tM(CAU)O1 72 nt11.76□□□□□ -0.53
CDC9P04819 IMT2tM(CAU)P 72 nt11.76□□□□□ -0.53
CDC9P04819 DAL1YIR027C 1383 nt11.75□□□□□ -0.53
CDC9P04819 MEP2YNL142W 1500 nt11.7□□□□□ -0.54
CDC9P04819 FPR4YLR449W 1179 nt11.69□□□□□ -0.54
CDC9P04819 RKM5YLR137W 1104 nt11.67□□□□□ -0.54
CDC9P04819 PHO4YFR034C 939 nt11.65□□□□□ -0.54
CDC9P04819 INM2YDR287W 879 nt11.63□□□□□ -0.55
CDC9P04819 RPP2BYDR382W 333 nt11.63□□□□□ -0.55
CDC9P04819 YFL021C-AYFL021C-A 855 nt11.62□□□□□ -0.55
CDC9P04819 YPS1YLR120C 1710 nt11.58□□□□□ -0.56
CDC9P04819 BDF1YLR399C 2061 nt11.55□□□□□ -0.56
CDC9P04819 DCW1YKL046C 1350 nt11.52□□□□□ -0.57
CDC9P04819 YLR281CYLR281C 468 nt11.51□□□□□ -0.57
CDC9P04819 PUS2YGL063W 1113 nt11.5□□□□□ -0.57
CDC9P04819 BDH2YAL061W 1254 nt11.49□□□□□ -0.57
CDC9P04819 YBL100CYBL100C 315 nt11.46□□□□□ -0.57
CDC9P04819 YHR165W-AYHR165W-A 312 nt11.45□□□□□ -0.58
CDC9P04819 YDR095CYDR095C 411 nt11.44□□□□□ -0.58
CDC9P04819 LSM3YLR438C-A 270 nt11.44□□□□□ -0.58
CDC9P04819 WHI5YOR083W 888 nt11.39□□□□□ -0.59
CDC9P04819 TAT1YBR069C 1860 nt11.38□□□□□ -0.59
Retrieved 100 of 7,029 protein–RNA pairs in 11.5 ms