RNA–Protein interactions for RNA: YGR136W

LSB1, Transcript of Negative regulator of actin nucleation-promoting factor activity, yeast

Gene LSB1, Length 726 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSB1	YGR136W	VPS13	Q07878	3144 aa		4.6	□□□□□ -1.67
LSB1	YGR136W	RPL22A	P05749	121 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	TOM70	P07213	617 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	VMA2	P16140	517 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	RPL8A	P17076	256 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	SAM2	P19358	384 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	RNR3	P21672	869 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	MBR1	P23493	339 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	CLB1	P24868	471 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	CDC60	P26637	1090 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	YEL1	P34225	687 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	MYO3	P36006	1272 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	YKT6	P36015	200 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	MIC60	P36112	540 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	MRPL10	P36520	322 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	MAL31	P38156	614 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	NPR3	P38742	1146 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	RPN10	P38886	268 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	PES4	P39684	611 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	ECM1	P39715	212 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	TIF4631	P39935	952 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	PMT3	P47190	753 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	YPT11	P48559	417 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	SOL4	P53315	255 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	FOL1	P53848	824 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	YML037C	Q03703	340 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	DOT1	Q04089	582 aa	Known RBP	4.59	□□□□□ -1.67
LSB1	YGR136W	ACM1	Q08981	209 aa		4.59	□□□□□ -1.67
LSB1	YGR136W	RPL11A	P0C0W9	174 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	HCA4	P20448	770 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	MAK31	P23059	88 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	SWI4	P25302	1093 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	KIP1	P28742	1111 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	PRO3	P32263	286 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	VPS45	P38932	577 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	MAL11	P53048	616 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	TAN1	P53072	289 aa	Predicted RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	RTS3	P53289	263 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	RPT6	Q01939	405 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	RNT1	Q02555	471 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	TFB2	Q02939	513 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	VPS30	Q02948	557 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	YLR257W	Q06146	321 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	GET3	Q12154	354 aa	Known RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	TY3A-G	Q12173	290 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	CLF1	Q12309	687 aa	Predicted RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	CEX1	Q12453	761 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	RPL11B	Q3E757	174 aa	Predicted RBP	4.58	□□□□□ -1.68
LSB1	YGR136W	TY3A-I	Q99219	290 aa		4.58	□□□□□ -1.68
LSB1	YGR136W	NUC1	P08466	329 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	YER152C	P10356	443 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	RAD18	P10862	487 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	CDC12	P32468	407 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	MPE1	P35728	441 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	YKR078W	P36158	585 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	RXT2	P38255	430 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	YER130C	P39959	443 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	PSF2	P40359	213 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	CCM1	P48237	864 aa	Predicted RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	NNF2	P53253	936 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	ELA1	P53861	379 aa	Predicted RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	HDA1	P53973	706 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	MYO5	Q04439	1219 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	DUS3	Q06053	668 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	ALG6	Q12001	544 aa	Known RBP	4.57	□□□□□ -1.68
LSB1	YGR136W	NBL1	Q3E7Y6	73 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	YOR111W	Q99210	232 aa		4.57	□□□□□ -1.68
LSB1	YGR136W	TUS1	Q06412	1307 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	GPA1	P08539	472 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	MSD1	P15179	658 aa	Known RBP	4.56	□□□□□ -1.68
LSB1	YGR136W	MCM3	P24279	971 aa	Known RBP	4.56	□□□□□ -1.68
LSB1	YGR136W	EUG1	P32474	517 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	SWI3	P32591	825 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	YKR018C	P36114	725 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	TOM71	P38825	639 aa	Known RBP	4.56	□□□□□ -1.68
LSB1	YGR136W	GPB2	P39717	880 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	YEN1	P40028	759 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	CSM2	P40465	213 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	STU2	P46675	888 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	HLJ1	P48353	224 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	CUE3	P53137	624 aa	Known RBP	4.56	□□□□□ -1.68
LSB1	YGR136W	LSB1	P53281	241 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	TNA1	P53322	534 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	VPS72	Q03388	795 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	DCS2	Q12123	353 aa		4.56	□□□□□ -1.68
LSB1	YGR136W	TAO3	P40468	2376 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	CDC6	P09119	513 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	URA1	P28272	314 aa	Predicted RBP	4.55	□□□□□ -1.68
LSB1	YGR136W	BMH1	P29311	267 aa	Known RBP	4.55	□□□□□ -1.68
LSB1	YGR136W	UTR4	P32626	227 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.55	□□□□□ -1.68	not detected
LSB1	YGR136W	SLA2	P33338	968 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	SAS3	P34218	831 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	CEP3	P40969	608 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	TFG2	P41896	400 aa	Predicted RBP	4.55	□□□□□ -1.68
LSB1	YGR136W	ALT1	P52893	592 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	DAM1	P53267	343 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	RTC4	P53850	401 aa		4.55	□□□□□ -1.68
LSB1	YGR136W	BUL2	Q03758	920 aa	Known RBP	4.55	□□□□□ -1.68
LSB1	YGR136W	YDR341C	Q05506	607 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms