RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	PEF1	P53238	335 aa		4.66	□□□□□ -1.66
PRP28	YDR243C	CWC25	P53854	179 aa	Known RBP	4.66	□□□□□ -1.66
PRP28	YDR243C	ALF1	P53904	254 aa		4.66	□□□□□ -1.66
PRP28	YDR243C	SLT2	Q00772	484 aa		4.66	□□□□□ -1.66
PRP28	YDR243C	IRC3	Q06683	689 aa		4.66	□□□□□ -1.66
PRP28	YDR243C	COQ4	O13525	335 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	RED1	P14291	827 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	URA4	P20051	364 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	DIT1	P21623	536 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	DBF2	P22204	572 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	MCM3	P24279	971 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	CLB2	P24869	491 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	SMC1	P32908	1225 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	NTH2	P35172	780 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	YKR015C	P36111	568 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	TGL4	P36165	910 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	ABZ1	P37254	787 aa	Predicted RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.66	not detected
PRP28	YDR243C	RXT2	P38255	430 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	TIF5	P38431	405 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	AST2	P39945	430 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	YFH7	P43591	353 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	FAR7	P43592	221 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	RFX1	P48743	811 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	IMD3	P50095	523 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	ACS2	P52910	683 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	MCM6	P53091	1017 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	YGR054W	P53235	642 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	YGR067C	P53243	804 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	BOP3	P53958	396 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	HEF3	P53978	1044 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	SLU7	Q02775	382 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	ATP25	Q03153	612 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	ABZ2	Q03266	374 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	YDR179W-A	Q03983	463 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	TAF11	Q04226	346 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	RAD33	Q04231	177 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	RGC1	Q06108	1083 aa	Known RBP	4.65	□□□□□ -1.66
PRP28	YDR243C	YCS4	Q06156	1176 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	CRN1	Q06440	651 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	SWA2	Q06677	668 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.66	not detected
PRP28	YDR243C	OSW1	Q08692	278 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	NUR1	Q12066	484 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	PHM7	Q12252	991 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	RTP1	Q12751	981 aa		4.65	□□□□□ -1.66
PRP28	YDR243C	CCP1	P00431	361 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	CDC19	P00549	500 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	TUF1	P02992	437 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	RPS6A	P0CX37	236 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	RPS6B	P0CX38	236 aa	Predicted RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	RAP1	P11938	827 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	VMA2	P16140	517 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	PRP4	P20053	465 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	SPB1	P25582	841 aa	Predicted RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	ADY2	P25613	283 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	PYC2	P32327	1180 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	EUG1	P32474	517 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	YBL028C	P38202	106 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	EDC3	P39998	551 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	FYV10	P40492	516 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	CNN1	P43618	361 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	TRF5	P48561	642 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	BRO1	P48582	844 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	LYS5	P50113	272 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	ZDS2	P54786	942 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	ORC4	P54791	529 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	RPM2	Q02773	1202 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	DTD1	Q07648	150 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	DIS3	Q08162	1001 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	SMC5	Q08204	1093 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	SGO1	Q08490	590 aa		4.65	□□□□□ -1.67
PRP28	YDR243C	RIB2	Q12362	591 aa	Known RBP	4.65	□□□□□ -1.67
PRP28	YDR243C	SIR3	P06701	978 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	CMD1	P06787	147 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	GPA1	P08539	472 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	PGI1	P12709	554 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	GAL2	P13181	574 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	GLK1	P17709	500 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	DBP3	P20447	523 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	MSB1	P21339	1137 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	KIN3	P22209	435 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	RAD53	P22216	821 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	KRR1	P25586	316 aa	Predicted RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	POL4	P25615	582 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	CDC15	P27636	974 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	CRM1	P30822	1084 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	SIN4	P32259	974 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	NIP1	P32497	812 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	GIP1	P38229	639 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	CCC2	P38995	1004 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	CCT6	P39079	546 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	DSS1	P39112	969 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	RCY1	P39531	840 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	MTW1	P39731	289 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	YJL070C	P40361	888 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	UBP6	P43593	499 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	NOP9	P47077	666 aa	Known RBP	4.64	□□□□□ -1.67
PRP28	YDR243C	KAP114	P53067	1004 aa		4.64	□□□□□ -1.67
PRP28	YDR243C	RRP46	P53256	223 aa	Predicted RBP	4.64	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms