RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W OTU2P38747 307 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W ATF1P40353 525 aa2.32□□□□□ -2.04
SIR4YDR227W CIR1P42940 261 aa2.32□□□□□ -2.04
SIR4YDR227W YGR016WP53209 190 aa2.32□□□□□ -2.04
SIR4YDR227W MDR1P53258 950 aa2.32□□□□□ -2.04
SIR4YDR227W YLR346CQ06139 101 aa2.32□□□□□ -2.04
SIR4YDR227W ECM7Q06200 448 aa2.32□□□□□ -2.04
SIR4YDR227W SKG3Q06315 1026 aa2.32□□□□□ -2.04
SIR4YDR227W PPM2Q08282 695 aa2.32□□□□□ -2.04
SIR4YDR227W TRE1Q08919 783 aa2.32□□□□□ -2.04
SIR4YDR227W HAL9Q12180 1030 aa2.32□□□□□ -2.04
SIR4YDR227W SEC39Q12745 709 aa2.32□□□□□ -2.04
SIR4YDR227W SPC29P33419 253 aa2.32□□□□□ -2.04
SIR4YDR227W PCL7P40186 285 aa2.32□□□□□ -2.04
SIR4YDR227W JEM1P40358 645 aa2.32□□□□□ -2.04
SIR4YDR227W ZIP2P53061 704 aa2.32□□□□□ -2.04
SIR4YDR227W COX18P53239 316 aa2.32□□□□□ -2.04
SIR4YDR227W PKH1Q03407 766 aa2.32□□□□□ -2.04
SIR4YDR227W DUS3Q06053 668 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W SEC62P21825 274 aa2.32□□□□□ -2.04
SIR4YDR227W RPL8BP29453 256 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W DAL1P32375 460 aa2.32□□□□□ -2.04
SIR4YDR227W UTR2P32623 467 aa2.32□□□□□ -2.04
SIR4YDR227W AGP2P38090 596 aa2.32□□□□□ -2.04
SIR4YDR227W SAW1P39735 261 aa2.32□□□□□ -2.04
SIR4YDR227W SAP4P53036 818 aa2.32□□□□□ -2.04
SIR4YDR227W ROD1Q02805 837 aa2.32□□□□□ -2.04
SIR4YDR227W SVL3Q03088 825 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W YKU80Q04437 629 aa2.32□□□□□ -2.04
SIR4YDR227W RTN1Q04947 295 aaKnown RBP2.32□□□□□ -2.04
SIR4YDR227W SPN1Q06505 410 aaPredicted RBP2.32□□□□□ -2.04
SIR4YDR227W GPI13Q07830 1017 aa2.32□□□□□ -2.04
SIR4YDR227W FMP25Q08023 583 aa2.32□□□□□ -2.04
SIR4YDR227W YOR352WQ08816 343 aa2.32□□□□□ -2.04
SIR4YDR227W SKM1Q12469 655 aa2.32□□□□□ -2.04
SIR4YDR227W SWI5P08153 709 aa2.31□□□□□ -2.04
SIR4YDR227W HMG1P12683 1054 aa2.31□□□□□ -2.04
SIR4YDR227W MEF1P25039 761 aa2.31□□□□□ -2.04
SIR4YDR227W PPQ1P32945 549 aa2.31□□□□□ -2.04
SIR4YDR227W TCD1P38756 429 aa2.31□□□□□ -2.04
SIR4YDR227W GDH3P39708 457 aa2.31□□□□□ -2.04
SIR4YDR227W SOL4P53315 255 aa2.31□□□□□ -2.04
SIR4YDR227W MEP3P53390 489 aa2.31□□□□□ -2.04
SIR4YDR227W LSC1P53598 329 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W YPL071CQ02864 156 aa2.31□□□□□ -2.04
SIR4YDR227W FCP1Q03254 732 aa2.31□□□□□ -2.04
SIR4YDR227W BSC2Q05611 235 aa2.31□□□□□ -2.04
SIR4YDR227W PCK1P10963 549 aa2.31□□□□□ -2.04
SIR4YDR227W BET2P20133 325 aa2.31□□□□□ -2.04
SIR4YDR227W MSH3P25336 1018 aa2.31□□□□□ -2.04
SIR4YDR227W KRR1P25586 316 aaPredicted RBP2.31□□□□□ -2.04
SIR4YDR227W CWH43P25618 953 aa2.31□□□□□ -2.04
SIR4YDR227W PEP12P32854 288 aa2.31□□□□□ -2.04
SIR4YDR227W KKQ8P36004 724 aa2.31□□□□□ -2.04
SIR4YDR227W LAS1P36146 502 aaPredicted RBP2.31□□□□□ -2.04
SIR4YDR227W ALG14P38242 237 aa2.31□□□□□ -2.04
SIR4YDR227W CCZ1P38273 704 aa2.31□□□□□ -2.04
SIR4YDR227W YFL034WP43564 1073 aa2.31□□□□□ -2.04
SIR4YDR227W RMD8P43620 662 aa2.31□□□□□ -2.04
SIR4YDR227W POL31P46957 487 aa2.31□□□□□ -2.04
SIR4YDR227W COG6P53959 839 aa2.31□□□□□ -2.04
SIR4YDR227W TDA9Q04545 1251 aa2.31□□□□□ -2.04
SIR4YDR227W YOR111WQ99210 232 aa2.31□□□□□ -2.04
SIR4YDR227W FLO11P08640 1367 aa2.31□□□□□ -2.04
SIR4YDR227W THR1P17423 357 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W COX11P19516 300 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W YBR071WP38243 211 aa2.31□□□□□ -2.04
SIR4YDR227W YHR097CP38809 366 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W YPT35P38815 214 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W FLC2P39719 783 aa2.31□□□□□ -2.04
SIR4YDR227W SBE2P42223 864 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W ALY2P47029 1046 aa2.31□□□□□ -2.04
SIR4YDR227W CCM1P48237 864 aaPredicted RBP2.31□□□□□ -2.04
SIR4YDR227W KRE33P53914 1056 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W YNL115CP53925 644 aa2.31□□□□□ -2.04
SIR4YDR227W LEE1Q02799 301 aaKnown RBP2.31□□□□□ -2.04
SIR4YDR227W MLC2Q06580 163 aa2.31□□□□□ -2.04
SIR4YDR227W MRP7P12687 371 aa2.3□□□□□ -2.04
SIR4YDR227W SPO16P17122 198 aa2.3□□□□□ -2.04
SIR4YDR227W RPI1P23250 407 aaKnown RBP2.3□□□□□ -2.04
SIR4YDR227W HSP78P33416 811 aa2.3□□□□□ -2.04
SIR4YDR227W YKL107WP34251 309 aa2.3□□□□□ -2.04
SIR4YDR227W YHR020WP38708 688 aaKnown RBP2.3□□□□□ -2.04
SIR4YDR227W EFM4P40516 257 aa2.3□□□□□ -2.04
SIR4YDR227W FET5P43561 622 aa2.3□□□□□ -2.04
SIR4YDR227W GCV2P49095 1034 aa2.3□□□□□ -2.04
SIR4YDR227W AMA1P50082 593 aa2.3□□□□□ -2.04
SIR4YDR227W BRE5P53741 515 aaKnown RBP2.3□□□□□ -2.04
SIR4YDR227W UFD2P54860 961 aa2.3□□□□□ -2.04
SIR4YDR227W CAB1Q04430 367 aa2.3□□□□□ -2.04
SIR4YDR227W DSE3Q08729 430 aa2.3□□□□□ -2.04
SIR4YDR227W TFB4Q12004 338 aa2.3□□□□□ -2.04
SIR4YDR227W VPS5Q92331 675 aa2.3□□□□□ -2.04
SIR4YDR227W PDE2P06776 526 aa2.3□□□□□ -2.04
SIR4YDR227W CMP2P14747 604 aa2.3□□□□□ -2.04
SIR4YDR227W PDC5P16467 563 aaKnown RBP2.3□□□□□ -2.04
SIR4YDR227W KAP122P32767 1081 aa2.3□□□□□ -2.04
SIR4YDR227W MUP3P38734 546 aa2.3□□□□□ -2.04
SIR4YDR227W YER034WP40022 185 aaKnown RBP2.3□□□□□ -2.04
SIR4YDR227W SDS3P40505 327 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms