RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT8	YLR055C	CLB4	P24871	460 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	GPI10	P30777	616 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	YEL1	P34225	687 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	END3	P39013	349 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	AXL1	P40851	1208 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	ERP6	P53198	216 aa		11.65	□□□□□ -0.55
SPT8	YLR055C	RPL22B	P56628	122 aa	Known RBP	11.65	□□□□□ -0.55
SPT8	YLR055C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.65	□□□□□ -0.55	not detected
SPT8	YLR055C	TRZ1	P36159	838 aa	Predicted RBP	11.64	□□□□□ -0.55
SPT8	YLR055C	SSP1	P38871	571 aa		11.64	□□□□□ -0.55
SPT8	YLR055C	MDJ2	P42834	146 aa		11.64	□□□□□ -0.55
SPT8	YLR055C	ZIP2	P53061	704 aa		11.64	□□□□□ -0.55
SPT8	YLR055C	PIB1	Q06651	286 aa		11.64	□□□□□ -0.55
SPT8	YLR055C	NOC3	Q07896	663 aa	Predicted RBP	11.64	□□□□□ -0.55
SPT8	YLR055C	SNF1	P06782	633 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	YMR085W	P0CF18	432 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	DBP5	P20449	482 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	OXP1	P28273	1286 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	SSE1	P32589	693 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	RAD54	P32863	898 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	SMY2	P32909	740 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	PTC3	P34221	468 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	PGM2	P37012	569 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	EAF5	P39995	279 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	UBP6	P43593	499 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	NNF2	P53253	936 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	SPT2	P06843	333 aa	Predicted RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	PWP1	P21304	576 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	RME1	P32338	300 aa	Known RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	EXO5	P38289	585 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	VHC1	P38329	1120 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	MSG5	P38590	489 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	YNL040W	P53960	456 aa	Predicted RBP	11.63	□□□□□ -0.55
SPT8	YLR055C	ROD1	Q02805	837 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	YML020W	Q03722	664 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	COQ9	Q05779	260 aa		11.63	□□□□□ -0.55
SPT8	YLR055C	PCK1	P10963	549 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	SCJ1	P25303	377 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	SEC21	P32074	935 aa	Known RBP	11.62	□□□□□ -0.55
SPT8	YLR055C	CDC11	P32458	415 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	AVT1	P47082	602 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	ACF4	P47129	309 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	ARK1	P53974	638 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	BET4	Q00618	327 aa		11.62	□□□□□ -0.55
SPT8	YLR055C	CHS2	P14180	963 aa		11.61	□□□□□ -0.55
SPT8	YLR055C	EFT1	P32324	842 aa	Known RBP	11.61	□□□□□ -0.55
SPT8	YLR055C	EMW1	P42842	904 aa	Known RBP	11.61	□□□□□ -0.55
SPT8	YLR055C	PCL10	P53124	433 aa		11.61	□□□□□ -0.55
SPT8	YLR055C	ILV2	P07342	687 aa	Known RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	AFT1	P22149	690 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	11.6	□□□□□ -0.55	RIP-Chip
SPT8	YLR055C	CAP1	P28495	268 aa	Known RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	DPH5	P32469	300 aa	Predicted RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	NCL1	P38205	684 aa	Known RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	ERC1	P38767	581 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	LCB2	P40970	561 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	REC107	P21651	314 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	DBF4	P32325	704 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	EFB1	P32471	206 aa	Known RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	TFC3	P34111	1160 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	YBR032W	P38223	100 aa		11.6	□□□□□ -0.55
SPT8	YLR055C	GPN2	Q08726	347 aa	Predicted RBP	11.6	□□□□□ -0.55
SPT8	YLR055C	CDC33	P07260	213 aa	Known RBP	11.59	□□□□□ -0.55
SPT8	YLR055C	CBF1	P17106	351 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	VMA4	P22203	233 aa	Known RBP	11.59	□□□□□ -0.55
SPT8	YLR055C	KIP1	P28742	1111 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	RRN6	P32786	894 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	DUR3	P33413	735 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	YBL055C	P34220	418 aa	Predicted RBP	11.59	□□□□□ -0.55
SPT8	YLR055C	UBP13	P38187	747 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	HSM3	P38348	480 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	GUA1	P38625	525 aa	Known RBP	11.59	□□□□□ -0.55
SPT8	YLR055C	HOS4	P40480	1083 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	SAD1	P43589	448 aa		11.59	□□□□□ -0.55
SPT8	YLR055C	RLP24	Q07915	199 aa	Known RBP	11.59	□□□□□ -0.55
SPT8	YLR055C	PHO8	P11491	566 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	COT1	P32798	439 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	ERP5	P38819	212 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	GCR1	P07261	785 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	HEM15	P16622	393 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	MRPL25	P23369	157 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	TPO2	P53283	614 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	RTT102	P53330	157 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	TIM8	P57744	87 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	ATG16	Q03818	150 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	ECM30	Q06673	1274 aa		11.58	□□□□□ -0.56
SPT8	YLR055C	ABP140	Q08641	628 aa	Known RBP	11.58	□□□□□ -0.56
SPT8	YLR055C	RIF1	P29539	1916 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	YSC83	P32792	385 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	AZR1	P50080	613 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	ATP25	Q03153	612 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	CUR1	Q06469	252 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	11.57	□□□□□ -0.56	not detected
SPT8	YLR055C	IES4	Q08561	116 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	OSW2	Q12202	724 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	OCA6	Q12454	224 aa		11.57	□□□□□ -0.56
SPT8	YLR055C	MLS1	P30952	554 aa		11.56	□□□□□ -0.56
SPT8	YLR055C	MSS51	P32335	436 aa		11.56	□□□□□ -0.56
SPT8	YLR055C	MRE11	P32829	692 aa		11.56	□□□□□ -0.56
SPT8	YLR055C	CCL1	P37366	393 aa		11.56	□□□□□ -0.56

Retrieved 100 of 5,963 RNA–protein pairs in 68.1 ms