RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W APE1P14904 514 aa4.78□□□□□ -1.64
SSH4YKL124W OM45P16547 393 aa4.78□□□□□ -1.64
SSH4YKL124W VPS3P23643 1011 aa4.78□□□□□ -1.64
SSH4YKL124W PGS1P25578 521 aa4.78□□□□□ -1.64
SSH4YKL124W YKL091CP33324 310 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W YKL023WP36103 277 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W RGA1P39083 1007 aa4.78□□□□□ -1.64
SSH4YKL124W SIP5P40210 489 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W SEC27P41811 889 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W MAF1P41910 395 aa4.78□□□□□ -1.64
SSH4YKL124W FIG4P42837 879 aa4.78□□□□□ -1.64
SSH4YKL124W RCF1Q03713 159 aa4.78□□□□□ -1.64
SSH4YKL124W TIF35Q04067 274 aaKnown RBP4.78□□□□□ -1.64
SSH4YKL124W TLG2Q08144 397 aa4.78□□□□□ -1.64
SSH4YKL124W GYP1Q08484 637 aa4.78□□□□□ -1.64
SSH4YKL124W REC8Q12188 680 aa4.78□□□□□ -1.64
SSH4YKL124W HSP42Q12329 375 aa4.78□□□□□ -1.64
SSH4YKL124W GIS3Q12418 502 aa4.78□□□□□ -1.64
SSH4YKL124W STB3Q12427 513 aa4.78□□□□□ -1.64
SSH4YKL124W APM4Q99186 491 aa4.78□□□□□ -1.64
SSH4YKL124W PUP1P25043 261 aa4.77□□□□□ -1.65
SSH4YKL124W RAD51P25454 400 aa4.77□□□□□ -1.65
SSH4YKL124W PEP7P32609 515 aa4.77□□□□□ -1.65
SSH4YKL124W PIN4P34217 668 aaKnown RBP RIP-Chip data4.77□□□□□ -1.65not detected
SSH4YKL124W MNR2P35724 969 aa4.77□□□□□ -1.65
SSH4YKL124W RGD1P38339 666 aa4.77□□□□□ -1.65
SSH4YKL124W UBP5P39944 805 aa4.77□□□□□ -1.65
SSH4YKL124W VAC8P39968 578 aa4.77□□□□□ -1.65
SSH4YKL124W TOS3P43637 560 aa4.77□□□□□ -1.65
SSH4YKL124W POL31P46957 487 aa4.77□□□□□ -1.65
SSH4YKL124W SNU56Q03782 492 aaKnown RBP4.77□□□□□ -1.65
SSH4YKL124W HCR1Q05775 265 aaKnown RBP4.77□□□□□ -1.65
SSH4YKL124W MLH2Q07980 695 aa4.77□□□□□ -1.65
SSH4YKL124W SGO1Q08490 590 aa4.77□□□□□ -1.65
SSH4YKL124W YRR1Q12172 810 aa4.77□□□□□ -1.65
SSH4YKL124W TOR2P32600 2474 aaKnown RBP4.77□□□□□ -1.65
SSH4YKL124W TPK1P06244 397 aa4.77□□□□□ -1.65
SSH4YKL124W SPE1P08432 466 aa4.77□□□□□ -1.65
SSH4YKL124W MAS1P10507 462 aa4.77□□□□□ -1.65
SSH4YKL124W CHS2P14180 963 aa4.77□□□□□ -1.65
SSH4YKL124W IMG2P25642 146 aaPredicted RBP4.77□□□□□ -1.65
SSH4YKL124W SAC6P32599 642 aaKnown RBP4.77□□□□□ -1.65
SSH4YKL124W SLA2P33338 968 aa4.77□□□□□ -1.65
SSH4YKL124W CTM1P38818 585 aa4.77□□□□□ -1.65
SSH4YKL124W GPI8P49018 411 aa4.77□□□□□ -1.65
SSH4YKL124W STB4P50104 949 aa4.77□□□□□ -1.65
SSH4YKL124W ART5P53244 586 aaKnown RBP4.77□□□□□ -1.65
SSH4YKL124W ATF2P53296 535 aa4.77□□□□□ -1.65
SSH4YKL124W RPA49Q01080 415 aaPredicted RBP4.77□□□□□ -1.65
SSH4YKL124W RPN4Q03465 531 aa4.77□□□□□ -1.65
SSH4YKL124W RRD2Q12461 358 aa4.77□□□□□ -1.65
SSH4YKL124W RPS9AO13516 197 aaKnown RBP4.76□□□□□ -1.65
SSH4YKL124W COX6P00427 148 aa4.76□□□□□ -1.65
SSH4YKL124W GPA1P08539 472 aa4.76□□□□□ -1.65
SSH4YKL124W KEX2P13134 814 aa4.76□□□□□ -1.65
SSH4YKL124W RAM1P22007 431 aa4.76□□□□□ -1.65
SSH4YKL124W PEX1P24004 1043 aa4.76□□□□□ -1.65
SSH4YKL124W MET4P32389 672 aa4.76□□□□□ -1.65
SSH4YKL124W SHE3P38272 425 aaKnown RBP4.76□□□□□ -1.65
SSH4YKL124W HXT5P38695 592 aa4.76□□□□□ -1.65
SSH4YKL124W YER130CP39959 443 aa4.76□□□□□ -1.65
SSH4YKL124W KAP123P40069 1113 aaKnown RBP4.76□□□□□ -1.65
SSH4YKL124W CIR1P42940 261 aa4.76□□□□□ -1.65
SSH4YKL124W SMC3P47037 1230 aa4.76□□□□□ -1.65
SSH4YKL124W COS5P47187 383 aa4.76□□□□□ -1.65
SSH4YKL124W PRP3Q03338 469 aaPredicted RBP4.76□□□□□ -1.65
SSH4YKL124W SPP382Q06411 708 aaPredicted RBP4.76□□□□□ -1.65
SSH4YKL124W APL5Q08951 932 aaKnown RBP4.76□□□□□ -1.65
SSH4YKL124W YBL113CQ7M4S9 792 aa4.76□□□□□ -1.65
SSH4YKL124W COX11P19516 300 aaKnown RBP4.75□□□□□ -1.65
SSH4YKL124W BET2P20133 325 aa4.75□□□□□ -1.65
SSH4YKL124W PPZ1P26570 692 aa4.75□□□□□ -1.65
SSH4YKL124W YEN1P40028 759 aa4.75□□□□□ -1.65
SSH4YKL124W VPS25P47142 202 aa4.75□□□□□ -1.65
SSH4YKL124W LEE1Q02799 301 aaKnown RBP4.75□□□□□ -1.65
SSH4YKL124W SRP1Q02821 542 aaKnown RBP4.75□□□□□ -1.65
SSH4YKL124W CDD1Q06549 142 aa4.75□□□□□ -1.65
SSH4YKL124W IWR1Q07532 353 aaPredicted RBP4.75□□□□□ -1.65
SSH4YKL124W LEA1Q08963 238 aaPredicted RBP4.75□□□□□ -1.65
SSH4YKL124W YPL216WQ08964 1102 aa4.75□□□□□ -1.65
SSH4YKL124W TAF10Q12030 206 aa4.75□□□□□ -1.65
SSH4YKL124W FAL1Q12099 399 aaKnown RBP4.75□□□□□ -1.65
SSH4YKL124W WHI5Q12416 295 aa4.75□□□□□ -1.65
SSH4YKL124W SCJ1P25303 377 aa4.75□□□□□ -1.65
SSH4YKL124W BRF1P29056 596 aa4.75□□□□□ -1.65
SSH4YKL124W TBS1P38114 1094 aa4.75□□□□□ -1.65
SSH4YKL124W PBP2P38151 413 aaKnown RBP RIP-Chip data4.75□□□□□ -1.65not detected
SSH4YKL124W RKM3P38222 552 aa4.75□□□□□ -1.65
SSH4YKL124W EFM2P38347 419 aa4.75□□□□□ -1.65
SSH4YKL124W MNN1P39106 762 aa4.75□□□□□ -1.65
SSH4YKL124W AIP1P46680 615 aaKnown RBP4.75□□□□□ -1.65
SSH4YKL124W YJR054WP47114 497 aa4.75□□□□□ -1.65
SSH4YKL124W SLG1P54867 378 aa4.75□□□□□ -1.65
SSH4YKL124W NSE5Q03718 556 aa4.75□□□□□ -1.65
SSH4YKL124W YSH1Q06224 779 aaPredicted RBP4.75□□□□□ -1.65
SSH4YKL124W PSR1Q07800 427 aa4.75□□□□□ -1.65
SSH4YKL124W IRC10Q08118 586 aa4.75□□□□□ -1.65
SSH4YKL124W YPR027CQ12079 277 aa4.75□□□□□ -1.65
SSH4YKL124W YGR161W-CQ3E744 92 aa4.75□□□□□ -1.65
SSH4YKL124W CHS1P08004 1131 aa4.74□□□□□ -1.65
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms