RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPF3	YGR072W	SET5	P38890	526 aa	Known RBP	4.15	□□□□□ -1.75
UPF3	YGR072W	NDC80	P40460	691 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	CAF16	P43569	289 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	GYP8	P43570	497 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	TEX1	P53851	422 aa	Known RBP	4.15	□□□□□ -1.75
UPF3	YGR072W	HFD1	Q04458	532 aa		4.15	□□□□□ -1.75
UPF3	YGR072W	FAP7	Q12055	197 aa	Predicted RBP	4.15	□□□□□ -1.75
UPF3	YGR072W	SIR3	P06701	978 aa		4.14	□□□□□ -1.75
UPF3	YGR072W	MTC2	P34246	357 aa		4.14	□□□□□ -1.75
UPF3	YGR072W	RPN10	P38886	268 aa	Known RBP	4.14	□□□□□ -1.75
UPF3	YGR072W	REV7	P38927	245 aa		4.14	□□□□□ -1.75
UPF3	YGR072W	MTR3	P48240	250 aa	Predicted RBP	4.14	□□□□□ -1.75
UPF3	YGR072W	GAD1	Q04792	585 aa		4.14	□□□□□ -1.75
UPF3	YGR072W	YLR001C	Q07895	862 aa		4.14	□□□□□ -1.75
UPF3	YGR072W	RAD18	P10862	487 aa		4.13	□□□□□ -1.75
UPF3	YGR072W	ORC2	P32833	620 aa		4.13	□□□□□ -1.75
UPF3	YGR072W	TYS1	P36421	394 aa	Known RBP	4.13	□□□□□ -1.75
UPF3	YGR072W	CCT3	P39077	534 aa	Known RBP	4.13	□□□□□ -1.75
UPF3	YGR072W	YEL020C	P39994	560 aa		4.13	□□□□□ -1.75
UPF3	YGR072W	SNP1	Q00916	300 aa	Predicted RBP	4.13	□□□□□ -1.75
UPF3	YGR072W	MET7	Q08645	548 aa		4.13	□□□□□ -1.75
UPF3	YGR072W	RPN13	O13563	156 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	TOP1	P04786	769 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	PYC1	P11154	1178 aa	Known RBP	4.12	□□□□□ -1.75
UPF3	YGR072W	SFL1	P20134	766 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	MGS1	P40151	587 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	FOL1	P53848	824 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	YKL033W-A	Q86ZR7	236 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	YBR182C-A	Q8TGU6	64 aa		4.12	□□□□□ -1.75
UPF3	YGR072W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
UPF3	YGR072W	PCL2	P25693	308 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	HOG1	P32485	435 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	UBS1	P38290	277 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	BDH2	P39713	417 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	ECM1	P39715	212 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	DOT6	P40059	670 aa	Known RBP	4.11	□□□□□ -1.75
UPF3	YGR072W	SHR5	P41912	237 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	PAN2	P53010	1115 aa	Predicted RBP	4.11	□□□□□ -1.75
UPF3	YGR072W	ZIP2	P53061	704 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	MET13	P53128	600 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	RIM13	Q03792	727 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	GUD1	Q07729	489 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	GIN4	Q12263	1142 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	TMA17	Q12513	150 aa		4.11	□□□□□ -1.75
UPF3	YGR072W	YUR1	P26725	428 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	GLG1	P36143	616 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	ARG2	P40360	574 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	ALY2	P47029	1046 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	CTR1	P49573	406 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	NHX1	Q04121	633 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	TRE2	Q08693	809 aa		4.1	□□□□□ -1.75
UPF3	YGR072W	PER1	P25625	357 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	PRP19	P32523	503 aa	Known RBP	4.09	□□□□□ -1.75
UPF3	YGR072W	MCD4	P36051	919 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	SFB3	P38810	929 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	FMO1	P38866	432 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	CKB2	P38930	258 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	RLP7	P40693	322 aa	Known RBP	4.09	□□□□□ -1.75
UPF3	YGR072W	MTL1	P53214	551 aa		4.09	□□□□□ -1.75
UPF3	YGR072W	MTQ2	Q03920	221 aa	Predicted RBP	4.09	□□□□□ -1.75
UPF3	YGR072W	YTM1	Q12024	460 aa	Predicted RBP	4.09	□□□□□ -1.75
UPF3	YGR072W	DIF1	O13577	133 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	MVD1	P32377	396 aa	Known RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	HSL7	P38274	827 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	PCM1	P38628	557 aa	Known RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	TPM2	P40414	161 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	GPP1	P41277	250 aa	Known RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	ATG36	P46983	293 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	HXT16	P47185	567 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	PRP31	P49704	494 aa	Predicted RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	YBP2	P53169	641 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	CTK1	Q03957	528 aa	Known RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	ATG33	Q06485	197 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	YOL057W	Q08225	711 aa		4.08	□□□□□ -1.76
UPF3	YGR072W	TMA7	Q3E764	64 aa	Known RBP	4.08	□□□□□ -1.76
UPF3	YGR072W	HOM2	P13663	365 aa	Known RBP	4.07	□□□□□ -1.76
UPF3	YGR072W	YBR071W	P38243	211 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
UPF3	YGR072W	LYS9	P38999	446 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	PAC2	P39937	518 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	NUG1	P40010	520 aa	Known RBP	4.07	□□□□□ -1.76
UPF3	YGR072W	GZF3	P42944	551 aa	Known RBP	4.07	□□□□□ -1.76
UPF3	YGR072W	TY4A-J	P47023	414 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	YJR096W	P47137	282 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	UBC9	P50623	157 aa	Predicted RBP	4.07	□□□□□ -1.76
UPF3	YGR072W	GPG1	P53130	126 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	FHN1	P53279	174 aa		4.07	□□□□□ -1.76
UPF3	YGR072W	VPS34	P22543	875 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	EUG1	P32474	517 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	YHR112C	P38716	378 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	NUP60	P39705	539 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	YFL052W	P43551	465 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	DUG1	P43616	481 aa	Known RBP	4.06	□□□□□ -1.76
UPF3	YGR072W	AIM14	P53109	570 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	PEX8	P53248	589 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	ATG4	P53867	494 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	SEG1	Q04279	960 aa		4.06	□□□□□ -1.76
UPF3	YGR072W	ADE2	P21264	571 aa	Known RBP	4.05	□□□□□ -1.76
UPF3	YGR072W	PHO11	P35842	467 aa		4.05	□□□□□ -1.76
UPF3	YGR072W	DID4	P36108	232 aa		4.05	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms