Protein–RNA interactions for Protein: P24276

SSD1, Protein SSD1, yeastyeast

Known RBP RIP-Chip data

Length 1,250 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSD1P24276 YML009W-BYML009W-B 477 nt22.35■■□□□ 1.17
SSD1P24276 NSR1YGR159C 1245 nt22.17■■□□□ 1.14
SSD1P24276 NOP1YDL014W 984 nt21.79■■□□□ 1.08
SSD1P24276 YKL036CYKL036C 393 nt20.2■□□□□ 0.82
SSD1P24276 MDJ1YFL016C 1536 nt19.56■□□□□ 0.72
SSD1P24276 Q0297Q0297 156 nt19.14■□□□□ 0.65
SSD1P24276 SRX1YKL086W 384 nt19.06■□□□□ 0.64
SSD1P24276 YJL027CYJL027C 417 nt18.85■□□□□ 0.61
SSD1P24276 SCS3YGL126W 1143 nt18.44■□□□□ 0.54
SSD1P24276 YCR051WYCR051W 669 nt18.04■□□□□ 0.48
SSD1P24276 YOL085CYOL085C 342 nt17.5■□□□□ 0.39
SSD1P24276 DBP2YNL112W 1641 nt17.38■□□□□ 0.37
SSD1P24276 TRN1tP(UGG)A 72 nt17.19■□□□□ 0.34
SSD1P24276 SUF9tP(UGG)F 72 nt17.19■□□□□ 0.34
SSD1P24276 SUF8tP(UGG)H 72 nt17.19■□□□□ 0.34
SSD1P24276 tP(UGG)LtP(UGG)L 72 nt17.19■□□□□ 0.34
SSD1P24276 SUF7tP(UGG)M 72 nt17.19■□□□□ 0.34
SSD1P24276 tP(UGG)N1tP(UGG)N1 72 nt17.19■□□□□ 0.34
SSD1P24276 tP(UGG)N2tP(UGG)N2 72 nt17.19■□□□□ 0.34
SSD1P24276 tP(UGG)O1tP(UGG)O1 72 nt17.19■□□□□ 0.34
SSD1P24276 SUF11tP(UGG)O2 72 nt17.19■□□□□ 0.34
SSD1P24276 PKP1YIL042C 1185 nt17.17■□□□□ 0.34
SSD1P24276 RPP1BYDL130W 321 nt17.15■□□□□ 0.34
SSD1P24276 CCC1YLR220W 969 nt16.93■□□□□ 0.3
SSD1P24276 YBR190WYBR190W 312 nt16.68■□□□□ 0.26
SSD1P24276 ATS1YAL020C 1002 nt16.51■□□□□ 0.23 RIP-Chip
SSD1P24276 SCJ1YMR214W 1134 nt16.48■□□□□ 0.23
SSD1P24276 PET122YER153C 765 nt16.37■□□□□ 0.21
SSD1P24276 RVS167YDR388W 1449 nt16.35■□□□□ 0.21
SSD1P24276 tP(UGG)O3tP(UGG)O3 72 nt16.27■□□□□ 0.2
SSD1P24276 RTC3YHR087W 336 nt16.26■□□□□ 0.19
SSD1P24276 SCR1SCR1 522 nt16.21■□□□□ 0.19
SSD1P24276 RRN5YLR141W 1092 nt15.9■□□□□ 0.14
SSD1P24276 SHR5YOL110W 714 nt15.82■□□□□ 0.12
SSD1P24276 YDJ1YNL064C 1230 nt15.76■□□□□ 0.11
SSD1P24276 YER088W-BYER088W-B 147 nt15.6■□□□□ 0.09
SSD1P24276 RSB1YOR049C 1065 nt15.59■□□□□ 0.09
SSD1P24276 GAR1YHR089C 618 nt15.35■□□□□ 0.05
SSD1P24276 URN1YPR152C 1398 nt15.29■□□□□ 0.04
SSD1P24276 PST2YDR032C 597 nt15.29■□□□□ 0.04
SSD1P24276 DEP1YAL013W 1218 nt15.28■□□□□ 0.04
SSD1P24276 RPN10YHR200W 807 nt15.1■□□□□ 0.01
SSD1P24276 YNL208WYNL208W 600 nt15.09■□□□□ 0.01
SSD1P24276 PUT4YOR348C 1884 nt15.08■□□□□ 0
SSD1P24276 OPI9YLR338W 858 nt15.07■□□□□ 0
SSD1P24276 Q0182Q0182 405 nt14.95□□□□□ -0.02
SSD1P24276 SAH1YER043C 1350 nt14.92□□□□□ -0.02
SSD1P24276 TIR1YER011W 765 nt14.85□□□□□ -0.03
SSD1P24276 ARE1YCR048W 1833 nt14.82□□□□□ -0.04
SSD1P24276 YKL097CYKL097C 411 nt14.71□□□□□ -0.05
SSD1P24276 SSA1YAL005C 1929 nt14.65□□□□□ -0.06
SSD1P24276 PUN1YLR414C 792 nt14.64□□□□□ -0.07
SSD1P24276 SHU1YHL006C 453 nt14.63□□□□□ -0.07
SSD1P24276 YHR049C-AYHR049C-A 297 nt14.63□□□□□ -0.07
SSD1P24276 YJR018WYJR018W 363 nt14.59□□□□□ -0.07
SSD1P24276 POA1YBR022W 534 nt14.57□□□□□ -0.08
SSD1P24276 SRB2YHR041C 633 nt14.43□□□□□ -0.1
SSD1P24276 YJR120WYJR120W 351 nt14.43□□□□□ -0.1
SSD1P24276 PTC2YER089C 1395 nt14.41□□□□□ -0.1
SSD1P24276 MOT3YMR070W 1473 nt14.34□□□□□ -0.11
SSD1P24276 YAL037C-BYAL037C-B 975 nt14.33□□□□□ -0.12
SSD1P24276 RPP2BYDR382W 333 nt14.32□□□□□ -0.12
SSD1P24276 BSC6YOL137W 1494 nt14.26□□□□□ -0.13
SSD1P24276 BUD23YCR047C 828 nt14.26□□□□□ -0.13
SSD1P24276 NAB2YGL122C 1578 nt14.22□□□□□ -0.13
SSD1P24276 WWM1YFL010C 636 nt14.2□□□□□ -0.14
SSD1P24276 YGR021WYGR021W 873 nt14.18□□□□□ -0.14
SSD1P24276 HOM6YJR139C 1080 nt14.14□□□□□ -0.15
SSD1P24276 YOR139CYOR139C 393 nt14.13□□□□□ -0.15
SSD1P24276 BDH2YAL061W 1254 nt14.08□□□□□ -0.16
SSD1P24276 SSA3YBL075C 1950 nt14.07□□□□□ -0.16
SSD1P24276 INM2YDR287W 879 nt14.07□□□□□ -0.16
SSD1P24276 FIS1YIL065C 468 nt14.07□□□□□ -0.16
SSD1P24276 DAL1YIR027C 1383 nt14.07□□□□□ -0.16
SSD1P24276 MNP1YGL068W 585 nt14.06□□□□□ -0.16
SSD1P24276 YFL021C-AYFL021C-A 855 nt14□□□□□ -0.17
SSD1P24276 FPR4YLR449W 1179 nt13.97□□□□□ -0.17
SSD1P24276 NPL3YDR432W 1245 nt13.96□□□□□ -0.17
SSD1P24276 YBL100CYBL100C 315 nt13.95□□□□□ -0.18
SSD1P24276 PHO4YFR034C 939 nt13.93□□□□□ -0.18
SSD1P24276 RKM5YLR137W 1104 nt13.92□□□□□ -0.18
SSD1P24276 LSM3YLR438C-A 270 nt13.92□□□□□ -0.18
SSD1P24276 YOL037CYOL037C 354 nt13.9□□□□□ -0.18
SSD1P24276 FUN26YAL022C 1554 nt13.79□□□□□ -0.2
SSD1P24276 TRM9YML014W 840 nt13.76□□□□□ -0.21 RIP-Chip
SSD1P24276 CCT6YDR188W 1641 nt13.66□□□□□ -0.22
SSD1P24276 YPS1YLR120C 1710 nt13.63□□□□□ -0.23
SSD1P24276 YDR095CYDR095C 411 nt13.58□□□□□ -0.24
SSD1P24276 tM(CAU)CtM(CAU)C 72 nt13.56□□□□□ -0.24
SSD1P24276 IMT4tM(CAU)E 72 nt13.56□□□□□ -0.24
SSD1P24276 IMT3tM(CAU)J3 72 nt13.56□□□□□ -0.24
SSD1P24276 IMT1tM(CAU)O1 72 nt13.56□□□□□ -0.24
SSD1P24276 IMT2tM(CAU)P 72 nt13.56□□□□□ -0.24
SSD1P24276 YLR281CYLR281C 468 nt13.55□□□□□ -0.24
SSD1P24276 ALF1YNL148C 765 nt13.55□□□□□ -0.24 RIP-Chip
SSD1P24276 SPT5YML010W 3192 nt13.54□□□□□ -0.24
SSD1P24276 SUF2tP(AGG)C 72 nt13.52□□□□□ -0.25
SSD1P24276 SUF10tP(AGG)N 72 nt13.52□□□□□ -0.25
SSD1P24276 WHI5YOR083W 888 nt13.48□□□□□ -0.25
SSD1P24276 YHR165W-AYHR165W-A 312 nt13.44□□□□□ -0.26
Retrieved 100 of 7,029 protein–RNA pairs in 10.3 ms