RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	APL2	P36000	726 aa	Predicted RBP	4.13	□□□□□ -1.75
UBX4	YMR067C	APT2	P36973	181 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
UBX4	YMR067C	PCL5	P38794	229 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	RPN10	P38886	268 aa	Known RBP	4.13	□□□□□ -1.75
UBX4	YMR067C	CCT3	P39077	534 aa	Known RBP	4.13	□□□□□ -1.75
UBX4	YMR067C	BUD6	P41697	788 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	CAF16	P43569	289 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	SSL2	Q00578	843 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	ASM4	Q05166	528 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	MCM21	Q06675	368 aa		4.13	□□□□□ -1.75
UBX4	YMR067C	MRH1	Q12117	320 aa	Predicted RBP	4.13	□□□□□ -1.75
UBX4	YMR067C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
UBX4	YMR067C	SIR3	P06701	978 aa		4.12	□□□□□ -1.75
UBX4	YMR067C	GFA1	P14742	717 aa	Known RBP	4.12	□□□□□ -1.75
UBX4	YMR067C	HIS7	P33734	552 aa	Known RBP	4.12	□□□□□ -1.75
UBX4	YMR067C	REV7	P38927	245 aa		4.12	□□□□□ -1.75
UBX4	YMR067C	ATF1	P40353	525 aa		4.12	□□□□□ -1.75
UBX4	YMR067C	YFL052W	P43551	465 aa		4.12	□□□□□ -1.75
UBX4	YMR067C	ORC4	P54791	529 aa		4.12	□□□□□ -1.75
UBX4	YMR067C	SNP1	Q00916	300 aa	Predicted RBP	4.12	□□□□□ -1.75
UBX4	YMR067C	CDC43	P18898	376 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	HIR1	P32479	840 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	MIP6	P38760	659 aa	Known RBP	4.11	□□□□□ -1.75
UBX4	YMR067C	NUP82	P40368	713 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	NPY1	P53164	384 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	ARG5,6	Q01217	863 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	CTK1	Q03957	528 aa	Known RBP	4.11	□□□□□ -1.75
UBX4	YMR067C	COG8	Q04632	607 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	YLR149C	Q99296	730 aa		4.11	□□□□□ -1.75
UBX4	YMR067C	CDC9	P04819	755 aa		4.1	□□□□□ -1.75
UBX4	YMR067C	PHO8	P11491	566 aa		4.1	□□□□□ -1.75
UBX4	YMR067C	HCA4	P20448	770 aa	Known RBP	4.1	□□□□□ -1.75
UBX4	YMR067C	TRZ1	P36159	838 aa	Predicted RBP	4.1	□□□□□ -1.75
UBX4	YMR067C	SMX3	P54999	86 aa	Predicted RBP	4.1	□□□□□ -1.75
UBX4	YMR067C	UGO1	Q03327	502 aa		4.1	□□□□□ -1.75
UBX4	YMR067C	PYC1	P11154	1178 aa	Known RBP	4.09	□□□□□ -1.75
UBX4	YMR067C	ADE2	P21264	571 aa	Known RBP	4.09	□□□□□ -1.75
UBX4	YMR067C	KIN3	P22209	435 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	DMC1	P25453	334 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	MSH2	P25847	964 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	CUE2	P36075	443 aa	Known RBP	4.09	□□□□□ -1.75
UBX4	YMR067C	HSL7	P38274	827 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	YHR112C	P38716	378 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	OSW7	P43611	510 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	YML122C	Q03207	126 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	NHX1	Q04121	633 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	YKL033W-A	Q86ZR7	236 aa		4.09	□□□□□ -1.75
UBX4	YMR067C	CIT2	P08679	460 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	VBA3	P25594	458 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	ILV6	P25605	309 aa	Known RBP	4.08	□□□□□ -1.76
UBX4	YMR067C	HOG1	P32485	435 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	YEL1	P34225	687 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	YKR018C	P36114	725 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	VPS73	P53142	486 aa	Known RBP	4.08	□□□□□ -1.76
UBX4	YMR067C	REC102	Q02721	264 aa		4.08	□□□□□ -1.76
UBX4	YMR067C	HMO1	Q03973	246 aa	Known RBP	4.08	□□□□□ -1.76
UBX4	YMR067C	CLF1	Q12309	687 aa	Predicted RBP	4.08	□□□□□ -1.76
UBX4	YMR067C	SRD1	P09007	221 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	MEF1	P25039	761 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	TDP1	P38319	544 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	CBR1	P38626	284 aa	Known RBP	4.07	□□□□□ -1.76
UBX4	YMR067C	DSS1	P39112	969 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	NUP60	P39705	539 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	GID8	P40208	455 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	YIL166C	P40445	542 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	PCL10	P53124	433 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	POB3	Q04636	552 aa	Known RBP	4.07	□□□□□ -1.76
UBX4	YMR067C	RPN7	Q06103	429 aa	Known RBP	4.07	□□□□□ -1.76
UBX4	YMR067C	TAF3	Q12297	353 aa		4.07	□□□□□ -1.76
UBX4	YMR067C	MIH1	P23748	554 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	MVD1	P32377	396 aa	Known RBP	4.06	□□□□□ -1.76
UBX4	YMR067C	YKR051W	P36142	418 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	FMO1	P38866	432 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	LYS9	P38999	446 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	ARG2	P40360	574 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	TAH11	P47112	604 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	PAN2	P53010	1115 aa	Predicted RBP	4.06	□□□□□ -1.76
UBX4	YMR067C	MTL1	P53214	551 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	ORC1	P54784	914 aa	Predicted RBP	4.06	□□□□□ -1.76
UBX4	YMR067C	NDJ1	Q12366	352 aa		4.06	□□□□□ -1.76
UBX4	YMR067C	THI4	P32318	326 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	PEX6	P33760	1030 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	YJL206C	P39529	758 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	BDH2	P39713	417 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	NDC80	P40460	691 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	FHN1	P53279	174 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	FPR4	Q06205	392 aa	Predicted RBP	4.05	□□□□□ -1.76
UBX4	YMR067C	SUT2	Q12286	268 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	HRP1	Q99383	534 aa	Known RBP	4.05	□□□□□ -1.76
UBX4	YMR067C	Q0142	Q9ZZW4	58 aa		4.05	□□□□□ -1.76
UBX4	YMR067C	YTA7	P40340	1379 aa		4.04	□□□□□ -1.76
UBX4	YMR067C	DOT6	P40059	670 aa	Known RBP	4.04	□□□□□ -1.76
UBX4	YMR067C	RPN13	O13563	156 aa		4.03	□□□□□ -1.76
UBX4	YMR067C	MET6	P05694	767 aa	Known RBP	4.03	□□□□□ -1.76
UBX4	YMR067C	RNR1	P21524	888 aa	Known RBP	4.03	□□□□□ -1.76
UBX4	YMR067C	PHO11	P35842	467 aa		4.03	□□□□□ -1.76
UBX4	YMR067C	GLG1	P36143	616 aa		4.03	□□□□□ -1.76
UBX4	YMR067C	PHO12	P38693	467 aa		4.03	□□□□□ -1.76
UBX4	YMR067C	SFB3	P38810	929 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 40.9 ms