RNA–Protein interactions for RNA: YHR170W

NMD3, Transcript of Protein involved in nuclear export of the large ribosomal subunit, yeast

Gene NMD3, Length 1,557 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD3	YHR170W	FOL1	P53848	824 aa		5.09	□□□□□ -1.59
NMD3	YHR170W	RKM2	Q03942	479 aa		5.09	□□□□□ -1.59
NMD3	YHR170W	YDR341C	Q05506	607 aa	Known RBP	5.09	□□□□□ -1.59
NMD3	YHR170W	SKG3	Q06315	1026 aa		5.09	□□□□□ -1.59
NMD3	YHR170W	YDL121C	Q07541	149 aa		5.09	□□□□□ -1.59
NMD3	YHR170W	TMA46	Q12000	345 aa	Known RBP	5.09	□□□□□ -1.59
NMD3	YHR170W	GET3	Q12154	354 aa	Known RBP	5.09	□□□□□ -1.59
NMD3	YHR170W	CIT1	P00890	479 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	NUC1	P08466	329 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	URA1	P28272	314 aa	Predicted RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	MCM4	P30665	933 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	CST26	P38226	397 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	NUP82	P40368	713 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	NIT1	P40447	199 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	ALG2	P43636	503 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	HUL5	P53119	910 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	SSL2	Q00578	843 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	MDM1	Q01846	1127 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	SMD2	Q06217	110 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	AVO1	Q08236	1176 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	DSE3	Q08729	430 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	TRP2	P00899	507 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	GPA1	P08539	472 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	PGI1	P12709	554 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	RAD27	P26793	382 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	ELM1	P32801	640 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	YKL069W	P36088	180 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	TAT1	P38085	619 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	RKM3	P38222	552 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	NDT80	P38830	627 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	YER130C	P39959	443 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	RSM25	P40496	264 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	ASE1	P50275	885 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	UTP14	Q04500	899 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	EIS1	Q05050	843 aa	Known RBP	5.08	□□□□□ -1.6
NMD3	YHR170W	PTC5	Q12511	572 aa		5.08	□□□□□ -1.6
NMD3	YHR170W	TUS1	Q06412	1307 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	PRI2	P20457	528 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	SEC6	P32844	805 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	NPR3	P38742	1146 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	PNT1	P38969	423 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	ERP2	P39704	215 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	ACA1	P39970	489 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	YGL138C	P53122	345 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	EAR1	Q03212	550 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	TIF35	Q04067	274 aa	Known RBP	5.07	□□□□□ -1.6
NMD3	YHR170W	SGD1	Q06132	899 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	ESC2	Q06340	456 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	OPI10	Q08202	246 aa		5.07	□□□□□ -1.6
NMD3	YHR170W	DDP1	Q99321	188 aa	Known RBP	5.07	□□□□□ -1.6
NMD3	YHR170W	FKS1	P38631	1876 aa	Known RBP	5.06	□□□□□ -1.6
NMD3	YHR170W	SYP1	P25623	870 aa	Known RBP	5.06	□□□□□ -1.6
NMD3	YHR170W	LYP1	P32487	611 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	PGM1	P33401	570 aa	Known RBP	5.06	□□□□□ -1.6
NMD3	YHR170W	ALG3	P38179	458 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	NMD3	P38861	518 aa	Known RBP	5.06	□□□□□ -1.6
NMD3	YHR170W	VPS45	P38932	577 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	TIF4631	P39935	952 aa	Known RBP	5.06	□□□□□ -1.6
NMD3	YHR170W	LYS14	P40971	790 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	TY4A-J	P47023	414 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	TYW3	P53177	273 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	YPL034W	Q03083	165 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	CSR2	Q12734	1121 aa		5.06	□□□□□ -1.6
NMD3	YHR170W	QNS1	P38795	714 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	TOM71	P38825	639 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	CRP1	P38845	465 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	CIT3	P43635	486 aa		5.05	□□□□□ -1.6
NMD3	YHR170W	YPT11	P48559	417 aa		5.05	□□□□□ -1.6
NMD3	YHR170W	ALT1	P52893	592 aa		5.05	□□□□□ -1.6
NMD3	YHR170W	RSA3	Q05942	220 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	YLR225C	Q05948	407 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	YLR257W	Q06146	321 aa	Known RBP	5.05	□□□□□ -1.6
NMD3	YHR170W	GIC2	Q06648	383 aa		5.05	□□□□□ -1.6
NMD3	YHR170W	NBL1	Q3E7Y6	73 aa		5.05	□□□□□ -1.6
NMD3	YHR170W	FBP1	P09201	348 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	BAS1	P22035	811 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	NFS1	P25374	497 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	TIM23	P32897	222 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	SMY2	P32909	740 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	MOT2	P34909	587 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	SEA4	P38164	1038 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	RFT1	P38206	574 aa	Predicted RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	TAT2	P38967	592 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	TMA64	Q04600	565 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	MMR1	Q06324	491 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	VIP1	Q06685	1146 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.04	□□□□□ -1.6	not detected
NMD3	YHR170W	PSR2	Q07949	397 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	PUS1	Q12211	544 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	CLF1	Q12309	687 aa	Predicted RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	TUF1	P02992	437 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	RPS4A	P0CX35	261 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	RPS4B	P0CX36	261 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	PHO8	P11491	566 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	DBP5	P20449	482 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	NNK1	P36003	928 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	ATG14	P38270	344 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	STT3	P39007	718 aa	Known RBP	5.04	□□□□□ -1.6
NMD3	YHR170W	PEA2	P40091	420 aa		5.04	□□□□□ -1.6
NMD3	YHR170W	MPH1	P40562	993 aa		5.04	□□□□□ -1.6

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms