RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	HSP78	P33416	811 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	SPC29	P33419	253 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	STO1	P34160	861 aa	Known RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	YEL1	P34225	687 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	WHI3	P34761	661 aa	Known RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	YKL133C	P36066	463 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	YBR238C	P38330	731 aa	Known RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	TCD1	P38756	429 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	YNG2	P38806	282 aa	Known RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	CKB2	P38930	258 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	STU2	P46675	888 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	SDH1	Q00711	640 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	SRP1	Q02821	542 aa	Known RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	GIR2	Q03768	265 aa	Predicted RBP	4.84	□□□□□ -1.63
PRE9	YGR135W	LAP2	Q10740	671 aa		4.84	□□□□□ -1.63
PRE9	YGR135W	RPO41	P13433	1351 aa	Known RBP	4.83	□□□□□ -1.64
PRE9	YGR135W	GCD1	P09032	578 aa	Predicted RBP	4.83	□□□□□ -1.64
PRE9	YGR135W	RNR2	P09938	399 aa	Known RBP	4.83	□□□□□ -1.64
PRE9	YGR135W	BIK1	P11709	440 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	SSH4	P32343	579 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	LTV1	P34078	463 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	RFC1	P38630	861 aa	Known RBP	4.83	□□□□□ -1.64
PRE9	YGR135W	CIN4	P39110	191 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	SIT1	P39980	628 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	RSM25	P40496	264 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	DUG1	P43616	481 aa	Known RBP	4.83	□□□□□ -1.64
PRE9	YGR135W	GYP7	P48365	746 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	DSD1	P53095	428 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	SPO1	P53541	631 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	RCM1	P53972	490 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	CSI1	Q04368	295 aa		4.83	□□□□□ -1.64
PRE9	YGR135W	RPS4A	P0CX35	261 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	RPS4B	P0CX36	261 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	GFD2	P25370	566 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	KCC4	P25389	1037 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	ERT1	P38140	529 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	YAR028W	P39548	234 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	OAF1	P39720	1047 aa	Predicted RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	TOK1	P40310	691 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	IES1	P43579	692 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	ALT1	P52893	592 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	AIM14	P53109	570 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	PBP1	P53297	722 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	SRT1	Q03175	343 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	PHM6	Q05637	104 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	MLC2	Q06580	163 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	AVO1	Q08236	1176 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	ALG6	Q12001	544 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	RRP6	Q12149	733 aa	Known RBP	4.82	□□□□□ -1.64
PRE9	YGR135W	RMP1	Q12530	201 aa		4.82	□□□□□ -1.64
PRE9	YGR135W	LEU2	P04173	364 aa	Predicted RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	RPS19A	P07280	144 aa	Known RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	RPS19B	P07281	144 aa	Predicted RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	CDC16	P09798	840 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	YER152C	P10356	443 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	REC104	P33323	182 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	DID4	P36108	232 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	EXO84	P38261	753 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	HSE1	P38753	452 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	YAP1801	P38856	637 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	DOT6	P40059	670 aa	Known RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	CEP3	P40969	608 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	GZF3	P42944	551 aa	Known RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	CAF16	P43569	289 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	GYP8	P43570	497 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	DAM1	P53267	343 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	ESF2	P53743	316 aa	Known RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	SNP1	Q00916	300 aa	Predicted RBP	4.81	□□□□□ -1.64
PRE9	YGR135W	VPS60	Q03390	229 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	RSC3	Q06639	885 aa		4.81	□□□□□ -1.64
PRE9	YGR135W	PFK1	P16861	987 aa	Known RBP	4.8	□□□□□ -1.64
PRE9	YGR135W	PER1	P25625	357 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	DAL3	P32459	195 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	SMY2	P32909	740 aa	Known RBP	4.8	□□□□□ -1.64
PRE9	YGR135W	MRPL10	P36520	322 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	PCM1	P38628	557 aa	Known RBP	4.8	□□□□□ -1.64
PRE9	YGR135W	PNT1	P38969	423 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	HIS6	P40545	261 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	TAF1	P46677	1066 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	NIT2	P47016	307 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	VPS53	P47061	822 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	YGR153W	P48238	217 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	YGR283C	P53336	341 aa	Predicted RBP	4.8	□□□□□ -1.64
PRE9	YGR135W	YNL050C	P53952	270 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	SSL2	Q00578	843 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	TIM50	Q02776	476 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	PEX19	Q07418	342 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	PSR2	Q07949	397 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	MET7	Q08645	548 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	SFI1	Q12369	946 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	SPO21	Q12411	609 aa		4.8	□□□□□ -1.64
PRE9	YGR135W	INH1	P01097	85 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	RPL11A	P0C0W9	174 aa	Known RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	MPH2	P0CD99	609 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	HMG1	P12683	1054 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	HOG1	P32485	435 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	NNK1	P36003	928 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	AKL1	P38080	1108 aa	Known RBP	4.79	□□□□□ -1.64
PRE9	YGR135W	NPR3	P38742	1146 aa		4.79	□□□□□ -1.64
PRE9	YGR135W	MXR1	P40029	184 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms